Wall clock time and date at job start Tue Mar 31 2020 07:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47173 * 2 1 4 4 O 1.42902 * 109.47606 * 239.99685 * 2 1 3 5 5 C 1.50706 * 109.46957 * 119.99725 * 2 1 3 6 6 C 1.38228 * 119.99983 * 85.21528 * 5 2 1 7 7 C 1.38238 * 120.00110 * 180.21781 * 6 5 2 8 8 C 1.38234 * 119.99675 * 359.52133 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 N 1.46505 * 109.46804 * 90.00184 * 9 8 7 11 11 C 1.34780 * 119.99957 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99810 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99810 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46603 * 180.02562 * 13 11 10 15 15 C 1.76202 * 99.99917 * 180.02562 * 14 13 11 16 16 H 1.08010 * 119.99697 * 359.97438 * 15 14 13 17 17 C 1.38788 * 120.00399 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99923 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00482 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46618 * 60.00243 * 19 17 15 21 21 H 1.48497 * 109.47598 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47048 * 300.00562 * 19 17 15 23 23 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 24 24 C 1.38234 * 119.99892 * 264.99748 * 5 2 1 25 25 H 1.08999 * 109.47448 * 300.00335 * 1 2 3 26 26 H 1.09005 * 109.46859 * 60.00483 * 1 2 3 27 27 H 1.09006 * 109.46956 * 179.97438 * 1 2 3 28 28 H 0.96701 * 113.99485 * 300.00180 * 4 2 1 29 29 H 1.08004 * 120.00281 * 0.02562 * 6 5 2 30 30 H 1.08002 * 120.00519 * 179.80752 * 7 6 5 31 31 H 1.08993 * 109.47429 * 210.00613 * 9 8 7 32 32 H 1.08998 * 109.46961 * 330.00864 * 9 8 7 33 33 H 0.96997 * 120.00105 * 0.02562 * 10 9 8 34 34 H 1.08998 * 109.47513 * 299.99645 * 13 11 10 35 35 H 1.08998 * 109.46904 * 60.00388 * 13 11 10 36 36 H 0.97002 * 119.99887 * 180.02562 * 18 17 15 37 37 H 1.07996 * 120.00471 * 179.97438 * 23 8 7 38 38 H 1.08001 * 120.00324 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 2.1685 -2.0859 1.2273 7 6 2.6250 -2.7380 2.3575 8 6 2.9546 -2.0135 3.4877 9 6 3.4578 -2.7237 4.7180 10 7 4.9178 -2.8289 4.6582 11 6 5.5915 -3.4315 5.6580 12 8 4.9890 -3.8871 6.6068 13 6 7.0934 -3.5392 5.5968 14 16 7.6976 -4.3937 7.0736 15 6 9.4293 -4.3794 6.7485 16 1 9.8050 -3.9256 5.8432 17 6 10.3105 -4.9511 7.6555 18 7 9.8526 -5.5045 8.7586 19 14 12.1463 -4.9366 7.3104 20 1 12.6161 -3.5330 7.1899 21 1 12.8649 -5.6045 8.4252 22 1 12.4173 -5.6600 6.0422 23 6 2.8221 -0.6375 3.4897 24 6 2.3611 0.0141 2.3610 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7211 -1.5953 -1.2327 29 1 1.9154 -2.6516 0.3428 30 1 2.7285 -3.8130 2.3561 31 1 3.1700 -2.1607 5.6057 32 1 3.0232 -3.7222 4.7643 33 1 5.3996 -2.4648 3.8992 34 1 7.3815 -4.1016 4.7087 35 1 7.5276 -2.5405 5.5512 36 1 10.4685 -5.9038 9.3927 37 1 3.0793 -0.0714 4.3727 38 1 2.2576 1.0891 2.3626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267336828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:00 Heat of formation + Delta-G solvation = -74.120452 kcal Electronic energy + Delta-G solvation = -19862.731591 eV Core-core repulsion = 16602.825252 eV Total energy + Delta-G solvation = -3259.906340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26648 -39.06228 -37.53562 -34.72151 -32.44484 -32.40793 -31.27395 -30.47123 -28.98518 -26.04917 -25.40488 -23.44352 -22.90959 -21.00102 -20.39077 -18.09406 -17.79064 -16.50057 -16.41395 -16.12171 -15.49278 -15.19558 -15.12714 -14.79792 -14.55888 -14.02050 -13.93212 -13.81363 -13.58817 -13.08091 -12.95902 -12.72313 -12.48007 -12.45333 -11.87122 -11.78131 -11.48306 -11.27396 -11.04049 -11.03240 -10.76746 -10.58903 -9.82540 -9.56520 -9.27352 -9.05964 -8.92555 -8.90727 -8.23756 -6.49655 -6.20984 -3.91718 0.84539 1.05757 3.01093 3.09059 3.24127 3.25363 3.29231 3.42842 3.85322 3.96949 4.14453 4.21107 4.41632 4.49472 4.58879 4.69807 4.73251 5.05503 5.08331 5.14021 5.15506 5.21390 5.38367 5.46931 5.48619 5.58049 5.64971 5.73450 5.79951 5.89686 6.01744 6.14840 6.16587 6.30028 6.56000 6.62162 7.11746 7.59868 7.70163 8.35647 8.59886 9.24167 10.86362 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.033117 B = 0.002355 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.295065 B =11884.353331 C =12364.392506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.142 3.858 3 H 0.107 0.893 4 O -0.557 6.557 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.096 4.096 8 C -0.101 4.101 9 C 0.161 3.839 10 N -0.735 5.735 11 C 0.532 3.468 12 O -0.518 6.518 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.097 4.097 24 C -0.113 4.113 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.374 0.626 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.127 0.873 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.420 10.991 -17.997 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.083 3.917 3 H 0.125 0.875 4 O -0.363 6.363 5 C -0.114 4.114 6 C -0.133 4.133 7 C -0.114 4.114 8 C -0.102 4.102 9 C 0.038 3.962 10 N -0.390 5.390 11 C 0.318 3.682 12 O -0.392 6.392 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.115 4.115 24 C -0.131 4.131 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.223 0.777 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.122 10.697 -16.325 27.324 hybrid contribution 1.806 0.189 -1.493 2.350 sum -17.316 10.886 -17.818 27.126 Atomic orbital electron populations 1.22489 0.95306 1.02969 1.03030 1.20825 0.93064 0.96034 0.81732 0.87485 1.86639 1.77272 1.29240 1.43182 1.20594 0.99964 0.94482 0.96390 1.20815 1.00579 0.93686 0.98264 1.21106 0.97800 1.00214 0.92298 1.19988 1.00619 0.93962 0.95620 1.20133 0.81081 1.00295 0.94731 1.46075 1.06444 1.61883 1.24591 1.20342 0.89512 0.76722 0.81617 1.90705 1.69880 1.46050 1.32545 1.23531 0.93442 1.05709 1.07669 1.85386 1.04571 1.73037 1.20347 1.22829 0.91527 1.44349 1.09710 0.90970 1.24993 0.99599 0.94541 0.94464 1.70010 1.35504 1.35387 1.09404 0.86221 0.82754 0.78474 0.78031 1.19941 1.20813 1.19932 1.21143 0.98102 0.93822 0.98436 1.20955 0.99593 0.99852 0.92743 0.91227 0.91383 0.92062 0.77743 0.86148 0.85506 0.90711 0.90719 0.76699 0.89196 0.89194 0.92132 0.85473 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.90 9.52 37.16 0.35 -0.54 16 2 C 0.14 0.92 3.83 -27.88 -0.11 0.81 16 3 H 0.11 0.65 8.05 -51.93 -0.42 0.24 16 4 O -0.56 -4.16 13.13 -35.23 -0.46 -4.62 16 5 C -0.11 -0.86 5.01 -104.62 -0.52 -1.39 16 6 C -0.12 -0.88 9.33 -39.59 -0.37 -1.25 16 7 C -0.10 -0.83 9.70 -39.58 -0.38 -1.22 16 8 C -0.10 -0.97 5.25 -104.62 -0.55 -1.52 16 9 C 0.16 1.90 5.80 -5.19 -0.03 1.87 16 10 N -0.74 -9.98 5.55 -61.47 -0.34 -10.32 16 11 C 0.53 9.95 7.85 -10.98 -0.09 9.87 16 12 O -0.52 -11.76 15.86 5.56 0.09 -11.67 16 13 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 16 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 19 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 24 C -0.11 -0.88 9.68 -39.58 -0.38 -1.27 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.37 1.58 7.39 45.56 0.34 1.92 16 29 H 0.12 0.63 6.61 -52.48 -0.35 0.28 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.40 4.50 8.46 -40.82 -0.35 4.16 16 34 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -35.24 343.70 -8.62 -43.86 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.54 Total: 2.26 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.04 Total: -11.79 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.39 Total: -35.83 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.37 Total: -16.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.24 -8.62 -43.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267336828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.260 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds