Wall clock time and date at job start Tue Mar 31 2020 07:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47173 * 2 1 4 4 O 1.42902 * 109.47606 * 239.99685 * 2 1 3 5 5 C 1.50706 * 109.46957 * 119.99725 * 2 1 3 6 6 C 1.38228 * 119.99983 * 85.21528 * 5 2 1 7 7 C 1.38238 * 120.00110 * 180.21781 * 6 5 2 8 8 C 1.38234 * 119.99675 * 359.52133 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 N 1.46505 * 109.46804 * 90.00184 * 9 8 7 11 11 C 1.34780 * 119.99957 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99810 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99810 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46603 * 180.02562 * 13 11 10 15 15 C 1.76202 * 99.99917 * 180.02562 * 14 13 11 16 16 H 1.08010 * 119.99697 * 359.97438 * 15 14 13 17 17 C 1.38788 * 120.00399 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99923 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00482 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46618 * 60.00243 * 19 17 15 21 21 H 1.48497 * 109.47598 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47048 * 300.00562 * 19 17 15 23 23 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 24 24 C 1.38234 * 119.99892 * 264.99748 * 5 2 1 25 25 H 1.08999 * 109.47448 * 300.00335 * 1 2 3 26 26 H 1.09005 * 109.46859 * 60.00483 * 1 2 3 27 27 H 1.09006 * 109.46956 * 179.97438 * 1 2 3 28 28 H 0.96701 * 113.99485 * 300.00180 * 4 2 1 29 29 H 1.08004 * 120.00281 * 0.02562 * 6 5 2 30 30 H 1.08002 * 120.00519 * 179.80752 * 7 6 5 31 31 H 1.08993 * 109.47429 * 210.00613 * 9 8 7 32 32 H 1.08998 * 109.46961 * 330.00864 * 9 8 7 33 33 H 0.96997 * 120.00105 * 0.02562 * 10 9 8 34 34 H 1.08998 * 109.47513 * 299.99645 * 13 11 10 35 35 H 1.08998 * 109.46904 * 60.00388 * 13 11 10 36 36 H 0.97002 * 119.99887 * 180.02562 * 18 17 15 37 37 H 1.07996 * 120.00471 * 179.97438 * 23 8 7 38 38 H 1.08001 * 120.00324 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 2.1685 -2.0859 1.2273 7 6 2.6250 -2.7380 2.3575 8 6 2.9546 -2.0135 3.4877 9 6 3.4578 -2.7237 4.7180 10 7 4.9178 -2.8289 4.6582 11 6 5.5915 -3.4315 5.6580 12 8 4.9890 -3.8871 6.6068 13 6 7.0934 -3.5392 5.5968 14 16 7.6976 -4.3937 7.0736 15 6 9.4293 -4.3794 6.7485 16 1 9.8050 -3.9256 5.8432 17 6 10.3105 -4.9511 7.6555 18 7 9.8526 -5.5045 8.7586 19 14 12.1463 -4.9366 7.3104 20 1 12.6161 -3.5330 7.1899 21 1 12.8649 -5.6045 8.4252 22 1 12.4173 -5.6600 6.0422 23 6 2.8221 -0.6375 3.4897 24 6 2.3611 0.0141 2.3610 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7211 -1.5953 -1.2327 29 1 1.9154 -2.6516 0.3428 30 1 2.7285 -3.8130 2.3561 31 1 3.1700 -2.1607 5.6057 32 1 3.0232 -3.7222 4.7643 33 1 5.3996 -2.4648 3.8992 34 1 7.3815 -4.1016 4.7087 35 1 7.5276 -2.5405 5.5512 36 1 10.4685 -5.9038 9.3927 37 1 3.0793 -0.0714 4.3727 38 1 2.2576 1.0891 2.3626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267336828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:00 Heat of formation + Delta-G solvation = -99.494642 kcal Electronic energy + Delta-G solvation = -19863.831899 eV Core-core repulsion = 16602.825252 eV Total energy + Delta-G solvation = -3261.006647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04191 -40.32917 -38.17293 -35.85587 -34.58588 -33.23233 -31.91812 -31.43656 -30.09903 -27.71875 -26.79982 -24.06244 -23.54194 -21.82389 -21.64000 -19.88345 -18.56207 -17.89753 -17.39597 -17.09568 -16.87882 -16.44300 -16.08290 -15.95107 -15.76723 -15.31427 -14.80863 -14.50444 -14.42951 -14.41988 -14.14354 -14.02458 -13.26688 -13.18334 -13.17268 -12.89588 -12.86241 -12.64504 -12.53484 -12.05582 -11.83034 -11.74517 -11.13082 -11.11210 -11.06474 -10.29121 -10.18098 -9.88484 -9.64766 -8.67201 -8.34618 -6.13008 0.17128 0.43967 1.27367 1.44004 1.47048 1.57056 1.58653 2.25597 2.29049 2.82445 2.99281 3.32602 3.50733 3.56959 3.75801 3.83162 3.98897 4.05966 4.16291 4.25447 4.29181 4.41901 4.48887 4.50329 4.67293 4.69291 4.83254 4.96618 4.98862 5.12264 5.23906 5.34890 5.39387 5.41478 5.58300 5.61520 5.98823 6.19518 6.46031 6.76378 7.06424 7.19834 8.74308 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.033117 B = 0.002355 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.295065 B =11884.353331 C =12364.392506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.144 3.856 3 H 0.110 0.890 4 O -0.574 6.574 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.112 4.112 9 C 0.164 3.836 10 N -0.709 5.709 11 C 0.535 3.465 12 O -0.564 6.564 13 C -0.129 4.129 14 S -0.150 6.150 15 C -0.548 4.548 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.262 1.262 23 C -0.104 4.104 24 C -0.118 4.118 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.387 0.613 29 H 0.144 0.856 30 H 0.132 0.868 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.414 0.586 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.131 0.869 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 12.239 -20.544 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.085 3.915 3 H 0.128 0.872 4 O -0.382 6.382 5 C -0.113 4.113 6 C -0.136 4.136 7 C -0.121 4.121 8 C -0.112 4.112 9 C 0.041 3.959 10 N -0.363 5.363 11 C 0.321 3.679 12 O -0.443 6.443 13 C -0.281 4.281 14 S 0.077 5.923 15 C -0.695 4.695 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.122 4.122 24 C -0.136 4.136 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.237 0.763 29 H 0.161 0.839 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.149 0.851 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.955 11.969 -18.929 29.340 hybrid contribution 1.604 -0.130 -0.824 1.808 sum -17.351 11.839 -19.753 28.834 Atomic orbital electron populations 1.22444 0.94178 1.03345 1.03376 1.20868 0.93858 0.95899 0.80887 0.87246 1.86613 1.77684 1.30432 1.43492 1.20837 0.99120 0.94648 0.96742 1.21093 0.99882 0.93993 0.98657 1.21230 0.97905 1.00583 0.92392 1.19774 1.02189 0.94284 0.94974 1.20171 0.79449 1.00331 0.95971 1.45846 1.07395 1.59698 1.23359 1.20073 0.88887 0.76934 0.82036 1.90694 1.70427 1.48496 1.34650 1.23372 0.94624 1.05811 1.04254 1.85557 1.05837 1.75007 1.25866 1.23172 0.91665 1.44486 1.10209 0.89932 1.26138 1.05263 0.93784 0.94020 1.70178 1.37473 1.36436 1.10631 0.85000 0.75656 0.79079 0.78235 1.18671 1.20363 1.18653 1.21253 0.98308 0.93550 0.99106 1.21203 0.99041 1.00946 0.92375 0.90926 0.90992 0.91696 0.76293 0.83864 0.85044 0.91294 0.91260 0.74971 0.87242 0.87249 0.91974 0.85088 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.52 71.98 0.68 -0.66 16 2 C 0.14 1.51 3.83 29.85 0.11 1.62 16 3 H 0.11 1.08 8.05 -2.39 -0.02 1.06 16 4 O -0.57 -7.22 13.13 -148.98 -1.96 -9.18 16 5 C -0.11 -1.45 5.01 -19.87 -0.10 -1.55 16 6 C -0.12 -1.52 9.33 22.27 0.21 -1.31 16 7 C -0.10 -1.61 9.70 22.27 0.22 -1.40 16 8 C -0.11 -2.00 5.25 -19.87 -0.10 -2.10 16 9 C 0.16 3.77 5.80 85.63 0.50 4.27 16 10 N -0.71 -18.44 5.55 -466.78 -2.59 -21.03 16 11 C 0.53 19.88 7.85 87.66 0.69 20.57 16 12 O -0.56 -26.25 15.86 -3.03 -0.05 -26.30 16 13 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 14 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 15 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 16 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 17 C 0.01 0.73 5.49 84.85 0.47 1.19 16 18 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 19 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 C -0.10 -1.66 9.70 22.27 0.22 -1.45 16 24 C -0.12 -1.58 9.68 22.27 0.22 -1.37 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.39 2.30 7.39 -74.06 -0.55 1.76 16 29 H 0.14 1.09 6.61 -2.91 -0.02 1.07 16 30 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.07 1.69 8.08 -2.39 -0.02 1.68 16 32 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 33 H 0.41 8.48 8.46 -92.71 -0.78 7.69 16 34 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 35 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -77.46 343.70 0.49 -76.96 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.25 Total: 16.91 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.19 Total: -17.68 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.30 Total: -76.92 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -2.00 Total: -35.48 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -77.46 0.49 -76.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267336828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.533 kcal (2) G-P(sol) polarization free energy of solvation -77.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds