Wall clock time and date at job start Tue Mar 31 2020 07:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 O 1.42902 * 109.46837 * 119.99637 * 2 1 3 5 5 C 1.50699 * 109.47341 * 239.99143 * 2 1 3 6 6 C 1.38236 * 119.99576 * 100.00144 * 5 2 1 7 7 C 1.38240 * 120.00058 * 179.97438 * 6 5 2 8 8 C 1.38232 * 119.99631 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99860 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.47064 * 89.99969 * 9 8 7 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47156 * 180.02562 * 13 11 10 15 15 C 1.76204 * 100.00151 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99845 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00054 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99948 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47220 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47248 * 120.00156 * 19 17 15 22 22 H 1.48501 * 109.47068 * 240.00173 * 19 17 15 23 23 C 1.38234 * 120.00312 * 0.27932 * 8 7 6 24 24 C 1.38235 * 119.99933 * 359.51395 * 23 8 7 25 25 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47033 * 300.00323 * 1 2 3 27 27 H 1.09002 * 109.46917 * 60.00465 * 1 2 3 28 28 H 0.96705 * 114.00197 * 299.99947 * 4 2 1 29 29 H 1.08002 * 120.00221 * 359.97438 * 6 5 2 30 30 H 1.07996 * 119.99763 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47152 * 330.00052 * 9 8 7 32 32 H 1.09001 * 109.46980 * 210.00152 * 9 8 7 33 33 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 34 34 H 1.09001 * 109.47380 * 300.00190 * 13 11 10 35 35 H 1.09002 * 109.47060 * 60.00278 * 13 11 10 36 36 H 0.96999 * 120.00126 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.00015 * 179.72855 * 23 8 7 38 38 H 1.08002 * 120.00360 * 180.27290 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0324 -0.7106 -1.2303 6 6 2.4589 0.0192 -2.3242 7 6 2.9202 -0.6325 -3.4526 8 6 2.9556 -2.0140 -3.4869 9 6 3.4591 -2.7245 -4.7169 10 7 4.9045 -2.9346 -4.6022 11 6 5.5756 -3.5562 -5.5919 12 8 4.9832 -3.9412 -6.5777 13 6 7.0625 -3.7718 -5.4742 14 16 7.6672 -4.6253 -6.9513 15 6 9.3802 -4.7443 -6.5563 16 1 9.7483 -4.3437 -5.6233 17 6 10.2567 -5.3520 -7.4445 18 7 9.8083 -5.8389 -8.5823 19 14 12.0728 -5.4775 -7.0260 20 1 12.3192 -4.8568 -5.6996 21 1 12.4741 -6.9066 -6.9865 22 1 12.8692 -4.7682 -8.0594 23 6 2.5243 -2.7438 -2.3951 24 6 2.0670 -2.0921 -1.2651 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7210 -0.2700 1.9980 29 1 2.4316 1.0985 -2.2972 30 1 3.2537 -0.0623 -4.3070 31 1 3.2489 -2.1185 -5.5982 32 1 2.9581 -3.6880 -4.8105 33 1 5.3781 -2.6270 -3.8136 34 1 7.5632 -2.8081 -5.3813 35 1 7.2731 -4.3772 -4.5925 36 1 10.4208 -6.2638 -9.2029 37 1 2.5479 -3.8231 -2.4236 38 1 1.7341 -2.6622 -0.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267336830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:03 Heat of formation + Delta-G solvation = -73.097054 kcal Electronic energy + Delta-G solvation = -19835.117013 eV Core-core repulsion = 16575.255051 eV Total energy + Delta-G solvation = -3259.861962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11138 -38.98865 -37.50324 -34.74905 -32.48613 -32.40673 -31.19544 -30.40675 -28.93100 -26.04210 -25.39609 -23.20122 -22.94571 -20.82404 -20.35340 -17.92592 -17.66394 -16.93427 -16.28314 -15.93416 -15.70233 -15.04379 -14.98925 -14.78871 -14.52479 -14.22335 -13.93607 -13.66215 -13.17764 -13.02633 -12.90543 -12.75580 -12.60863 -12.43507 -11.93493 -11.74379 -11.27821 -11.08142 -11.05600 -11.00078 -10.74317 -10.59336 -9.79226 -9.52714 -9.17405 -9.06189 -8.87282 -8.86659 -8.21079 -6.47988 -6.20148 -3.90396 0.91252 1.15882 3.04697 3.12285 3.22942 3.27854 3.32392 3.46793 3.78229 3.91639 4.22021 4.33145 4.52183 4.58110 4.63059 4.75879 4.80315 5.11097 5.15045 5.15870 5.18613 5.27303 5.33314 5.53220 5.55385 5.63744 5.69407 5.82461 5.84750 5.92259 6.10631 6.17258 6.28228 6.37966 6.60558 6.70530 7.17977 7.61763 7.74063 8.37319 8.63246 9.25344 10.87347 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032777 B = 0.002356 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.046366 B =11882.423554 C =12383.576278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.142 3.858 3 H 0.064 0.936 4 O -0.562 6.562 5 C -0.083 4.083 6 C -0.113 4.113 7 C -0.101 4.101 8 C -0.099 4.099 9 C 0.161 3.839 10 N -0.735 5.735 11 C 0.532 3.468 12 O -0.518 6.518 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.103 4.103 24 C -0.094 4.094 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.379 0.621 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.126 0.874 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.355 13.527 18.891 29.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.083 3.917 3 H 0.081 0.919 4 O -0.368 6.368 5 C -0.083 4.083 6 C -0.131 4.131 7 C -0.119 4.119 8 C -0.100 4.100 9 C 0.038 3.962 10 N -0.389 5.389 11 C 0.318 3.682 12 O -0.392 6.392 13 C -0.303 4.303 14 S 0.166 5.834 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.121 4.121 24 C -0.112 4.112 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.227 0.773 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.040 12.397 16.597 28.136 hybrid contribution 1.757 0.926 2.206 2.969 sum -17.283 13.323 18.803 28.805 Atomic orbital electron populations 1.22501 0.95473 1.03270 1.02636 1.20551 0.92836 0.94359 0.83921 0.91851 1.86573 1.76980 1.57547 1.15731 1.19609 1.00188 0.94172 0.94355 1.20924 0.99309 0.99718 0.93160 1.21074 0.98842 0.93805 0.98226 1.19990 1.00255 0.93888 0.95825 1.20140 0.81459 0.99991 0.94644 1.46070 1.07896 1.62201 1.22778 1.20332 0.89182 0.76534 0.82155 1.90703 1.69677 1.48719 1.30131 1.23531 0.93710 1.05444 1.07650 1.85390 1.06380 1.73404 1.18256 1.22913 0.92862 1.44588 1.07877 0.90870 1.24999 0.99511 0.94671 0.94486 1.70030 1.35486 1.36248 1.08543 0.86109 0.82869 0.77991 0.78483 1.19620 1.20570 1.20582 1.21170 0.98094 1.00236 0.92637 1.20960 0.98761 0.93808 0.97707 0.91501 0.92010 0.91287 0.77325 0.85880 0.85472 0.90720 0.90721 0.76687 0.89203 0.89193 0.92254 0.85564 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 9.51 37.16 0.35 -0.57 16 2 C 0.14 0.94 3.78 -27.88 -0.11 0.83 16 3 H 0.06 0.35 8.00 -51.93 -0.42 -0.07 16 4 O -0.56 -4.04 12.64 -35.23 -0.45 -4.49 16 5 C -0.08 -0.73 4.97 -104.62 -0.52 -1.25 16 6 C -0.11 -0.95 9.67 -39.58 -0.38 -1.34 16 7 C -0.10 -0.94 9.70 -39.58 -0.38 -1.33 16 8 C -0.10 -1.02 5.25 -104.62 -0.55 -1.57 16 9 C 0.16 1.99 5.80 -5.19 -0.03 1.96 16 10 N -0.73 -10.30 5.55 -61.47 -0.34 -10.64 16 11 C 0.53 10.13 7.85 -10.99 -0.09 10.04 16 12 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 13 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 16 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 19 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 24 C -0.09 -0.90 9.36 -39.58 -0.37 -1.27 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.38 1.02 9.08 45.56 0.41 1.44 16 29 H 0.12 0.77 8.04 -52.49 -0.42 0.35 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.40 4.69 8.46 -40.82 -0.35 4.35 16 34 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 35 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.13 1.13 7.78 -52.49 -0.41 0.72 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -35.70 345.94 -8.55 -44.25 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.52 Total: 2.34 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.04 Total: -11.91 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.39 Total: -36.27 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.36 Total: -16.32 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.70 -8.55 -44.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267336830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.849 kcal (2) G-P(sol) polarization free energy of solvation -35.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds