Wall clock time and date at job start Tue Mar 31 2020 07:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 O 1.42902 * 109.46837 * 119.99637 * 2 1 3 5 5 C 1.50699 * 109.47341 * 239.99143 * 2 1 3 6 6 C 1.38236 * 119.99576 * 100.00144 * 5 2 1 7 7 C 1.38240 * 120.00058 * 179.97438 * 6 5 2 8 8 C 1.38232 * 119.99631 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99860 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.47064 * 89.99969 * 9 8 7 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47156 * 180.02562 * 13 11 10 15 15 C 1.76204 * 100.00151 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99845 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00054 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99948 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47220 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47248 * 120.00156 * 19 17 15 22 22 H 1.48501 * 109.47068 * 240.00173 * 19 17 15 23 23 C 1.38234 * 120.00312 * 0.27932 * 8 7 6 24 24 C 1.38235 * 119.99933 * 359.51395 * 23 8 7 25 25 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47033 * 300.00323 * 1 2 3 27 27 H 1.09002 * 109.46917 * 60.00465 * 1 2 3 28 28 H 0.96705 * 114.00197 * 299.99947 * 4 2 1 29 29 H 1.08002 * 120.00221 * 359.97438 * 6 5 2 30 30 H 1.07996 * 119.99763 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47152 * 330.00052 * 9 8 7 32 32 H 1.09001 * 109.46980 * 210.00152 * 9 8 7 33 33 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 34 34 H 1.09001 * 109.47380 * 300.00190 * 13 11 10 35 35 H 1.09002 * 109.47060 * 60.00278 * 13 11 10 36 36 H 0.96999 * 120.00126 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.00015 * 179.72855 * 23 8 7 38 38 H 1.08002 * 120.00360 * 180.27290 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0324 -0.7106 -1.2303 6 6 2.4589 0.0192 -2.3242 7 6 2.9202 -0.6325 -3.4526 8 6 2.9556 -2.0140 -3.4869 9 6 3.4591 -2.7245 -4.7169 10 7 4.9045 -2.9346 -4.6022 11 6 5.5756 -3.5562 -5.5919 12 8 4.9832 -3.9412 -6.5777 13 6 7.0625 -3.7718 -5.4742 14 16 7.6672 -4.6253 -6.9513 15 6 9.3802 -4.7443 -6.5563 16 1 9.7483 -4.3437 -5.6233 17 6 10.2567 -5.3520 -7.4445 18 7 9.8083 -5.8389 -8.5823 19 14 12.0728 -5.4775 -7.0260 20 1 12.3192 -4.8568 -5.6996 21 1 12.4741 -6.9066 -6.9865 22 1 12.8692 -4.7682 -8.0594 23 6 2.5243 -2.7438 -2.3951 24 6 2.0670 -2.0921 -1.2651 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7210 -0.2700 1.9980 29 1 2.4316 1.0985 -2.2972 30 1 3.2537 -0.0623 -4.3070 31 1 3.2489 -2.1185 -5.5982 32 1 2.9581 -3.6880 -4.8105 33 1 5.3781 -2.6270 -3.8136 34 1 7.5632 -2.8081 -5.3813 35 1 7.2731 -4.3772 -4.5925 36 1 10.4208 -6.2638 -9.2029 37 1 2.5479 -3.8231 -2.4236 38 1 1.7341 -2.6622 -0.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267336830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:02 Heat of formation + Delta-G solvation = -99.062562 kcal Electronic energy + Delta-G solvation = -19836.242961 eV Core-core repulsion = 16575.255051 eV Total energy + Delta-G solvation = -3260.987911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99241 -40.25559 -38.11275 -35.90985 -34.58674 -33.33095 -31.89949 -31.44548 -30.04948 -27.72350 -26.82559 -23.89884 -23.62775 -21.81646 -21.50922 -19.88329 -18.17187 -18.06020 -17.62004 -16.96845 -16.87895 -16.72773 -16.03819 -15.94128 -15.74842 -15.19816 -14.92203 -14.60727 -14.46488 -14.40617 -14.05392 -13.57074 -13.41336 -13.25753 -13.16287 -13.06839 -12.90916 -12.61262 -12.49875 -11.98968 -11.72941 -11.66555 -11.15967 -11.13113 -10.99665 -10.28119 -10.17462 -9.87270 -9.65242 -8.66962 -8.34971 -6.13014 0.16863 0.45276 1.27727 1.41505 1.47518 1.58903 1.59219 2.25500 2.29167 2.82713 2.99130 3.32091 3.33578 3.62931 3.85741 3.93162 3.99731 4.07938 4.20334 4.24316 4.29828 4.42949 4.50370 4.51699 4.67568 4.71061 4.84341 4.91083 5.00909 5.13480 5.25887 5.35346 5.40587 5.42180 5.60077 5.63645 5.99780 6.20060 6.46616 6.91330 7.06394 7.20264 8.74527 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032777 B = 0.002356 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.046366 B =11882.423554 C =12383.576278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.141 3.859 3 H 0.080 0.920 4 O -0.583 6.583 5 C -0.087 4.087 6 C -0.114 4.114 7 C -0.104 4.104 8 C -0.108 4.108 9 C 0.164 3.836 10 N -0.709 5.709 11 C 0.535 3.465 12 O -0.564 6.564 13 C -0.129 4.129 14 S -0.150 6.150 15 C -0.545 4.545 16 H 0.082 0.918 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.273 1.273 23 C -0.109 4.109 24 C -0.105 4.105 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.398 0.602 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.414 0.586 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.128 0.872 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.036 15.317 21.349 31.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.083 3.917 3 H 0.098 0.902 4 O -0.392 6.392 5 C -0.087 4.087 6 C -0.131 4.131 7 C -0.122 4.122 8 C -0.109 4.109 9 C 0.041 3.959 10 N -0.363 5.363 11 C 0.321 3.679 12 O -0.443 6.443 13 C -0.281 4.281 14 S 0.077 5.923 15 C -0.693 4.693 16 H 0.100 0.900 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.127 4.127 24 C -0.123 4.123 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.248 0.752 29 H 0.166 0.834 30 H 0.154 0.846 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.746 14.222 19.122 30.321 hybrid contribution 1.517 0.451 1.570 2.229 sum -17.229 14.673 20.692 30.664 Atomic orbital electron populations 1.22459 0.94428 1.02826 1.03716 1.20622 0.93565 0.94593 0.82963 0.90235 1.86520 1.77412 1.58400 1.16859 1.19991 0.99176 0.94070 0.95475 1.21199 0.98443 1.01015 0.92482 1.21245 0.98628 0.93402 0.98971 1.19771 1.01714 0.94315 0.95066 1.20174 0.79894 0.99981 0.95831 1.45845 1.08727 1.60004 1.21727 1.20069 0.88596 0.76770 0.82482 1.90692 1.70259 1.51090 1.32212 1.23372 0.94843 1.05607 1.04231 1.85560 1.07645 1.75300 1.23784 1.23235 0.92978 1.44777 1.08341 0.89951 1.26145 1.05043 0.93936 0.94147 1.70189 1.37511 1.37197 1.09859 0.84887 0.75854 0.78259 0.78827 1.18086 1.19899 1.19873 1.21240 0.98244 1.00489 0.92776 1.21064 0.99157 0.94499 0.97610 0.92691 0.90068 0.91098 0.75197 0.83422 0.84586 0.90986 0.91361 0.74979 0.87192 0.87304 0.91975 0.85390 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.51 71.98 0.68 -0.72 16 2 C 0.14 1.52 3.78 29.85 0.11 1.63 16 3 H 0.08 0.61 8.00 -2.39 -0.02 0.59 16 4 O -0.58 -7.14 12.64 -148.98 -1.88 -9.02 16 5 C -0.09 -1.35 4.97 -19.87 -0.10 -1.45 16 6 C -0.11 -1.63 9.67 22.27 0.22 -1.42 16 7 C -0.10 -1.75 9.70 22.27 0.22 -1.53 16 8 C -0.11 -2.11 5.25 -19.87 -0.10 -2.21 16 9 C 0.16 3.95 5.80 85.63 0.50 4.45 16 10 N -0.71 -19.07 5.55 -466.78 -2.59 -21.66 16 11 C 0.53 20.23 7.85 87.66 0.69 20.91 16 12 O -0.56 -26.55 15.86 -3.03 -0.05 -26.60 16 13 C -0.13 -5.23 6.16 71.24 0.44 -4.80 16 14 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 15 C -0.55 -31.48 9.50 67.95 0.65 -30.84 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.69 5.49 84.86 0.47 1.15 16 18 N -0.91 -56.38 13.22 21.65 0.29 -56.10 16 19 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C -0.11 -2.06 9.70 22.27 0.22 -1.85 16 24 C -0.11 -1.88 9.36 22.27 0.21 -1.67 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.40 1.23 9.08 -74.05 -0.67 0.56 16 29 H 0.15 1.35 8.04 -2.91 -0.02 1.33 16 30 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 32 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 33 H 0.41 8.88 8.46 -92.71 -0.78 8.09 16 34 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 35 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.13 2.19 7.78 -2.91 -0.02 2.16 16 Total: -1.00 -78.54 345.94 0.44 -78.10 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.38 Total: 17.20 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.19 Total: -18.35 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -2.30 Total: -77.75 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.93 Total: -35.62 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -78.54 0.44 -78.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267336830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.963 kcal (2) G-P(sol) polarization free energy of solvation -78.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds