Wall clock time and date at job start Tue Mar 31 2020 07:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47178 * 2 1 4 4 C 1.52997 * 109.47353 * 120.00637 * 2 1 3 5 5 N 1.46503 * 109.47127 * 304.99645 * 4 2 1 6 6 C 1.34774 * 120.00595 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99562 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00244 * 180.02562 * 6 5 4 9 9 S 1.81005 * 109.46903 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99759 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00375 * 359.97438 * 10 9 8 12 12 C 1.38797 * 120.00070 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99746 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99998 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47416 * 90.00305 * 14 12 10 16 16 H 1.48507 * 109.46950 * 209.99710 * 14 12 10 17 17 H 1.48495 * 109.47543 * 329.99648 * 14 12 10 18 18 C 1.50706 * 109.46589 * 240.00096 * 2 1 3 19 19 C 1.38237 * 119.99744 * 90.00605 * 18 2 1 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00223 * 270.01815 * 18 2 1 24 24 H 1.08993 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46664 * 299.99653 * 1 2 3 26 26 H 1.08998 * 109.47218 * 59.99158 * 1 2 3 27 27 H 0.96705 * 113.99982 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47277 * 64.99169 * 4 2 1 29 29 H 1.08997 * 109.47386 * 185.00011 * 4 2 1 30 30 H 0.97006 * 119.99700 * 0.02562 * 5 4 2 31 31 H 1.09007 * 109.46732 * 299.99767 * 8 6 5 32 32 H 1.09000 * 109.47465 * 59.99985 * 8 6 5 33 33 H 0.97003 * 119.99805 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.00088 * 359.97438 * 19 18 2 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07998 * 119.99975 * 0.02562 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.4560 -0.1038 2.4424 6 6 1.7641 -0.5777 3.6659 7 8 2.5245 -1.5156 3.7790 8 6 1.1628 0.0572 4.8932 9 16 1.7663 -0.7961 6.3710 10 6 0.9300 0.1248 7.6189 11 1 0.2791 0.9412 7.3428 12 6 1.1078 -0.1990 8.9568 13 7 1.9007 -1.1943 9.2934 14 14 0.2217 0.7777 10.2798 15 1 -1.0950 0.1508 10.5599 16 1 1.0392 0.7868 11.5196 17 1 0.0166 2.1721 9.8121 18 6 2.0322 -0.7104 -1.2306 19 6 2.2627 0.0006 -2.3934 20 6 2.7228 -0.6511 -3.5223 21 6 2.9536 -2.0137 -3.4880 22 6 2.7185 -2.7255 -2.3266 23 6 2.2622 -2.0731 -1.1965 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 2.9704 1.4236 -0.0004 28 1 1.7516 -1.7717 1.2054 29 1 3.1263 -0.6445 1.2950 30 1 0.8469 0.6457 2.3518 31 1 1.4512 1.1075 4.9373 32 1 0.0765 -0.0196 4.8470 33 1 2.0252 -1.4204 10.2284 34 1 2.0824 1.0652 -2.4202 35 1 2.9025 -0.0957 -4.4310 36 1 3.3135 -2.5227 -4.3700 37 1 2.8946 -3.7907 -2.3011 38 1 2.0816 -2.6287 -0.2882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267451879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:20 Heat of formation + Delta-G solvation = -65.326112 kcal Electronic energy + Delta-G solvation = -20538.949453 eV Core-core repulsion = 17279.424464 eV Total energy + Delta-G solvation = -3259.524989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.43615 -39.00446 -37.48694 -34.30122 -32.52348 -32.41781 -31.18242 -29.95490 -29.12357 -26.41382 -25.42986 -23.42076 -22.63434 -20.54538 -20.37751 -18.01263 -17.90763 -16.84644 -16.27090 -15.79588 -15.71560 -15.02882 -14.79886 -14.76435 -14.56845 -14.20708 -13.90396 -13.58800 -13.27860 -13.05233 -12.72573 -12.66440 -12.55173 -12.28181 -11.96400 -11.73814 -11.45594 -11.05582 -11.03861 -11.01572 -10.76710 -10.39977 -9.80541 -9.42191 -9.22226 -9.08621 -9.06339 -8.88632 -8.22882 -6.49195 -6.20962 -3.91382 0.98575 1.09889 3.01710 3.10016 3.23078 3.28300 3.32372 3.44875 3.66449 3.92335 4.21272 4.29546 4.37828 4.67468 4.71632 4.76183 4.84795 5.11913 5.14255 5.19537 5.25233 5.39884 5.45937 5.55574 5.58941 5.68678 5.73142 5.78762 5.88473 5.91324 6.15024 6.15982 6.21629 6.23052 6.59138 6.67558 7.29322 7.60523 7.71694 8.36153 8.61373 9.24438 10.86495 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.041640 B = 0.002654 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.275706 B =10546.649927 C =10963.622634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 O -0.549 6.549 4 C 0.098 3.902 5 N -0.732 5.732 6 C 0.531 3.469 7 O -0.520 6.520 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.115 4.115 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.110 4.110 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.381 0.619 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.401 0.599 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 2.303 -25.836 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.123 3.877 3 O -0.356 6.356 4 C -0.027 4.027 5 N -0.388 5.388 6 C 0.317 3.683 7 O -0.394 6.394 8 C -0.303 4.303 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.128 4.128 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.229 0.771 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.237 0.763 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.239 0.757 -25.492 25.504 hybrid contribution -1.056 1.835 0.600 2.200 sum -1.295 2.592 -24.891 25.059 Atomic orbital electron populations 1.21759 0.91181 1.03076 1.03267 1.20180 0.95403 0.81895 0.90172 1.86543 1.27295 1.24970 1.96752 1.22001 0.98730 0.97786 0.84148 1.45951 1.50517 1.37279 1.05059 1.20331 0.80920 0.83207 0.83794 1.90699 1.34883 1.27587 1.86226 1.23525 1.03924 1.04378 0.98514 1.85383 1.61796 1.44048 0.92181 1.22870 1.32589 1.20081 0.92771 0.90914 1.24996 0.95298 0.95387 0.97945 1.70020 1.35095 1.27050 1.18166 0.86163 0.79267 0.79897 0.80143 1.20274 1.20760 1.19688 1.20362 1.00973 0.94435 0.95826 1.21000 0.98452 1.00398 0.92051 1.21166 0.99852 0.94751 0.98348 1.21219 0.99809 0.94493 0.98151 1.21189 0.99405 1.00124 0.93007 1.21244 0.98692 0.93984 0.98908 0.90636 0.91157 0.91411 0.77112 0.90443 0.91171 0.76317 0.89173 0.89209 0.92196 0.85334 0.86020 0.86109 0.85814 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.60 37.16 0.32 -0.86 16 2 C 0.16 1.51 0.90 -91.77 -0.08 1.43 16 3 O -0.55 -4.99 11.91 -35.23 -0.42 -5.41 16 4 C 0.10 1.14 4.29 -4.04 -0.02 1.12 16 5 N -0.73 -9.92 5.19 -60.29 -0.31 -10.23 16 6 C 0.53 9.96 7.85 -10.99 -0.09 9.88 16 7 O -0.52 -11.79 15.86 5.56 0.09 -11.70 16 8 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.12 -1.03 4.81 -104.62 -0.50 -1.54 16 19 C -0.10 -0.84 9.35 -39.58 -0.37 -1.21 16 20 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 21 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.11 -1.00 9.14 -39.58 -0.36 -1.37 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.61 6.57 -51.93 -0.34 0.27 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.38 2.60 9.04 45.56 0.41 3.02 16 28 H 0.08 0.93 6.21 -51.93 -0.32 0.61 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.40 4.60 6.99 -40.82 -0.29 4.31 16 31 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 32 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.13 0.97 7.49 -52.48 -0.39 0.58 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.15 6.05 -52.49 -0.32 0.83 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -34.75 337.20 -8.11 -42.86 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.17 Total: 4.78 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.87 Total: -12.44 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.42 Total: -35.77 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.33 Total: -17.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.75 -8.11 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267451879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.466 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds