Wall clock time and date at job start Tue Mar 31 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47178 * 2 1 4 4 C 1.52997 * 109.47353 * 120.00637 * 2 1 3 5 5 N 1.46503 * 109.47127 * 304.99645 * 4 2 1 6 6 C 1.34774 * 120.00595 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99562 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00244 * 180.02562 * 6 5 4 9 9 S 1.81005 * 109.46903 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99759 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00375 * 359.97438 * 10 9 8 12 12 C 1.38797 * 120.00070 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99746 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99998 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47416 * 90.00305 * 14 12 10 16 16 H 1.48507 * 109.46950 * 209.99710 * 14 12 10 17 17 H 1.48495 * 109.47543 * 329.99648 * 14 12 10 18 18 C 1.50706 * 109.46589 * 240.00096 * 2 1 3 19 19 C 1.38237 * 119.99744 * 90.00605 * 18 2 1 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00223 * 270.01815 * 18 2 1 24 24 H 1.08993 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46664 * 299.99653 * 1 2 3 26 26 H 1.08998 * 109.47218 * 59.99158 * 1 2 3 27 27 H 0.96705 * 113.99982 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47277 * 64.99169 * 4 2 1 29 29 H 1.08997 * 109.47386 * 185.00011 * 4 2 1 30 30 H 0.97006 * 119.99700 * 0.02562 * 5 4 2 31 31 H 1.09007 * 109.46732 * 299.99767 * 8 6 5 32 32 H 1.09000 * 109.47465 * 59.99985 * 8 6 5 33 33 H 0.97003 * 119.99805 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.00088 * 359.97438 * 19 18 2 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07998 * 119.99975 * 0.02562 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.4560 -0.1038 2.4424 6 6 1.7641 -0.5777 3.6659 7 8 2.5245 -1.5156 3.7790 8 6 1.1628 0.0572 4.8932 9 16 1.7663 -0.7961 6.3710 10 6 0.9300 0.1248 7.6189 11 1 0.2791 0.9412 7.3428 12 6 1.1078 -0.1990 8.9568 13 7 1.9007 -1.1943 9.2934 14 14 0.2217 0.7777 10.2798 15 1 -1.0950 0.1508 10.5599 16 1 1.0392 0.7868 11.5196 17 1 0.0166 2.1721 9.8121 18 6 2.0322 -0.7104 -1.2306 19 6 2.2627 0.0006 -2.3934 20 6 2.7228 -0.6511 -3.5223 21 6 2.9536 -2.0137 -3.4880 22 6 2.7185 -2.7255 -2.3266 23 6 2.2622 -2.0731 -1.1965 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 2.9704 1.4236 -0.0004 28 1 1.7516 -1.7717 1.2054 29 1 3.1263 -0.6445 1.2950 30 1 0.8469 0.6457 2.3518 31 1 1.4512 1.1075 4.9373 32 1 0.0765 -0.0196 4.8470 33 1 2.0252 -1.4204 10.2284 34 1 2.0824 1.0652 -2.4202 35 1 2.9025 -0.0957 -4.4310 36 1 3.3135 -2.5227 -4.3700 37 1 2.8946 -3.7907 -2.3011 38 1 2.0816 -2.6287 -0.2882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267451879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:19 Heat of formation + Delta-G solvation = -90.270456 kcal Electronic energy + Delta-G solvation = -20540.031121 eV Core-core repulsion = 17279.424464 eV Total energy + Delta-G solvation = -3260.606656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29120 -40.24542 -38.29999 -35.45682 -34.58446 -33.38062 -31.80005 -31.19122 -30.07094 -27.80135 -27.25082 -24.12743 -23.31246 -21.76197 -21.28344 -19.87922 -18.72965 -18.08781 -17.33966 -16.89462 -16.86269 -16.80181 -16.02675 -15.84218 -15.57909 -15.44522 -14.88199 -14.62560 -14.47652 -14.18977 -14.13287 -13.58613 -13.35497 -13.23393 -13.16465 -12.92867 -12.87533 -12.61686 -12.59737 -12.12729 -11.74520 -11.71214 -11.22402 -11.14252 -10.92886 -10.28278 -10.15758 -9.83847 -9.72062 -8.66887 -8.34754 -6.12805 0.36313 0.48344 1.26474 1.42721 1.46696 1.57420 1.58977 2.22306 2.28079 2.82952 2.99414 3.18376 3.31781 3.52769 3.59545 3.90317 3.97453 4.10785 4.15354 4.28631 4.29813 4.50733 4.52512 4.57884 4.66789 4.70676 4.79859 4.89081 5.06547 5.15104 5.18998 5.35453 5.42071 5.55918 5.60611 5.62253 6.08217 6.19960 6.44832 6.67130 7.06603 7.20535 8.74505 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.041640 B = 0.002654 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.275706 B =10546.649927 C =10963.622634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.179 3.821 3 O -0.554 6.554 4 C 0.097 3.903 5 N -0.706 5.706 6 C 0.534 3.466 7 O -0.565 6.565 8 C -0.130 4.130 9 S -0.150 6.150 10 C -0.546 4.546 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.258 1.258 18 C -0.123 4.123 19 C -0.106 4.106 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.127 4.127 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.390 0.610 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.415 0.585 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.271 0.729 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 4.013 -27.323 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.137 3.863 3 O -0.362 6.362 4 C -0.027 4.027 5 N -0.361 5.361 6 C 0.320 3.680 7 O -0.444 6.444 8 C -0.281 4.281 9 S 0.077 5.923 10 C -0.694 4.694 11 H 0.101 0.899 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.182 1.182 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.144 4.144 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.145 4.145 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.240 0.760 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.253 0.747 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.405 2.502 -27.031 27.183 hybrid contribution -0.674 1.304 0.884 1.713 sum -2.080 3.806 -26.147 26.504 Atomic orbital electron populations 1.21802 0.90670 1.03386 1.03677 1.19991 0.95658 0.81705 0.88925 1.86525 1.28367 1.24615 1.96643 1.22155 0.98313 0.98000 0.84212 1.45687 1.49536 1.36818 1.04022 1.20069 0.80493 0.82703 0.84768 1.90690 1.37099 1.29691 1.86899 1.23369 1.04856 1.04242 0.95620 1.85554 1.63407 1.46662 0.96656 1.23205 1.32653 1.20240 0.93294 0.89918 1.26137 0.95994 0.96424 1.00658 1.70184 1.36811 1.28955 1.18842 0.84945 0.77912 0.78599 0.76468 1.19268 1.20296 1.18218 1.20324 1.01696 0.94393 0.95961 1.21138 0.98443 1.00802 0.92021 1.21475 0.99036 0.94986 0.98906 1.21527 0.99180 0.94729 0.98583 1.21425 0.99281 1.00960 0.93071 1.21320 0.99656 0.94314 0.99232 0.90448 0.91039 0.90681 0.75980 0.90781 0.91900 0.74663 0.87322 0.87140 0.91985 0.84587 0.83898 0.84013 0.84663 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.60 71.98 0.62 -1.55 16 2 C 0.18 3.04 0.90 -11.54 -0.01 3.03 16 3 O -0.55 -8.97 11.91 -148.98 -1.77 -10.75 16 4 C 0.10 2.20 4.29 86.38 0.37 2.57 16 5 N -0.71 -18.24 5.19 -463.06 -2.40 -20.64 16 6 C 0.53 19.84 7.85 87.66 0.69 20.52 16 7 O -0.57 -26.23 15.86 -3.03 -0.05 -26.28 16 8 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.55 -31.32 9.50 67.95 0.65 -30.67 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.72 5.49 84.86 0.47 1.18 16 13 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 14 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 C -0.12 -2.06 4.81 -19.86 -0.10 -2.15 16 19 C -0.11 -1.56 9.35 22.27 0.21 -1.35 16 20 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 21 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 22 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 23 C -0.13 -2.25 9.14 22.27 0.20 -2.04 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.08 6.57 -2.39 -0.02 1.07 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.39 4.66 9.04 -74.05 -0.67 3.99 16 28 H 0.07 1.78 6.21 -2.38 -0.01 1.77 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.42 8.59 6.99 -92.70 -0.65 7.94 16 31 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.14 1.75 7.49 -2.91 -0.02 1.73 16 35 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.12 2.23 6.05 -2.91 -0.02 2.21 16 Total: -1.00 -76.21 337.20 0.90 -75.31 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.23 Total: 21.82 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 4.20 Total: -19.75 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -2.12 Total: -76.57 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.82 Total: -37.03 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -76.21 0.90 -75.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267451879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.963 kcal (2) G-P(sol) polarization free energy of solvation -76.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds