Wall clock time and date at job start Tue Mar 31 2020 07:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47212 * 2 1 4 4 C 1.53005 * 109.47174 * 239.99857 * 2 1 3 5 5 N 1.46496 * 109.46757 * 59.99959 * 4 2 1 6 6 C 1.34777 * 119.99773 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00218 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00072 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47029 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99659 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00440 * 0.02562 * 10 9 8 12 12 C 1.38806 * 119.99918 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99919 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00197 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46833 * 90.00290 * 14 12 10 16 16 H 1.48491 * 109.47391 * 210.00340 * 14 12 10 17 17 H 1.48497 * 109.47105 * 330.00684 * 14 12 10 18 18 C 1.50706 * 109.47186 * 120.00268 * 2 1 3 19 19 C 1.38233 * 120.00109 * 89.72231 * 18 2 1 20 20 C 1.38238 * 119.99749 * 179.78525 * 19 18 2 21 21 C 1.38234 * 120.00078 * 0.44989 * 20 19 18 22 22 C 1.38238 * 120.00032 * 359.80374 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46785 * 299.99904 * 1 2 3 25 25 H 1.09002 * 109.47171 * 59.99883 * 1 2 3 26 26 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 27 27 H 0.96705 * 113.99611 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47197 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47101 * 300.00440 * 4 2 1 30 30 H 0.96997 * 120.00357 * 359.97438 * 5 4 2 31 31 H 1.09001 * 109.47294 * 300.00373 * 8 6 5 32 32 H 1.09001 * 109.46745 * 59.99961 * 8 6 5 33 33 H 0.97003 * 120.00098 * 179.97438 * 13 12 10 34 34 H 1.08004 * 119.99934 * 0.02562 * 19 18 2 35 35 H 1.07999 * 119.99925 * 180.27297 * 20 19 18 36 36 H 1.08002 * 120.00276 * 179.83134 * 21 20 19 37 37 H 1.08000 * 120.00524 * 180.02562 * 22 21 20 38 38 H 1.07999 * 120.00181 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5516 -0.0307 -2.4454 6 6 1.8768 -0.4915 -3.6695 7 8 2.5741 -1.4775 -3.7808 8 6 1.3740 0.2186 -4.9000 9 16 1.9774 -0.6346 -6.3778 10 6 1.2614 0.3781 -7.6294 11 1 0.6587 1.2311 -7.3548 12 6 1.4729 0.0801 -8.9685 13 7 2.2079 -0.9593 -9.3033 14 14 0.7133 1.1531 -10.2955 15 1 1.6545 2.2467 -10.6468 16 1 0.4386 0.3302 -11.5006 17 1 -0.5572 1.7357 -9.7939 18 6 2.0324 -0.7105 1.2305 19 6 2.2573 -2.0740 1.1979 20 6 2.7223 -2.7249 2.3253 21 6 2.9535 -2.0139 3.4879 22 6 2.7236 -0.6512 3.5221 23 6 2.2630 0.0006 2.3934 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.9704 1.4235 -0.0004 28 1 3.1300 -0.7217 -1.2490 29 1 1.6766 -1.7489 -1.2493 30 1 0.9937 0.7577 -2.3564 31 1 0.2840 0.2186 -4.8996 32 1 1.7373 1.2463 -4.9003 33 1 2.3554 -1.1678 -10.2391 34 1 2.0734 -2.6301 0.2905 35 1 2.9023 -3.7895 2.2985 36 1 3.3143 -2.5228 4.3696 37 1 2.9046 -0.0955 4.4303 38 1 2.0829 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267451880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:22 Heat of formation + Delta-G solvation = -66.698516 kcal Electronic energy + Delta-G solvation = -20536.488497 eV Core-core repulsion = 17276.903996 eV Total energy + Delta-G solvation = -3259.584500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.42705 -39.00265 -37.48595 -34.26389 -32.55197 -32.41769 -31.17863 -29.95796 -29.13023 -26.38001 -25.42645 -23.41903 -22.63339 -20.56497 -20.36342 -18.00667 -17.90162 -16.83772 -16.26156 -15.80659 -15.68376 -15.02791 -14.79915 -14.76687 -14.57601 -14.21314 -13.90198 -13.59019 -13.25033 -13.05526 -12.73350 -12.66301 -12.55066 -12.30278 -11.96304 -11.73996 -11.45090 -11.05510 -11.04472 -11.01565 -10.76688 -10.39865 -9.80506 -9.42233 -9.22150 -9.08581 -9.06272 -8.88650 -8.22817 -6.49143 -6.20902 -3.91320 0.98675 1.09978 3.01545 3.10105 3.23158 3.28300 3.32306 3.44881 3.65903 3.93822 4.21330 4.30111 4.37668 4.68141 4.71694 4.75986 4.85241 5.12966 5.14278 5.19643 5.25675 5.40751 5.46579 5.56014 5.58728 5.68491 5.73434 5.78288 5.88548 5.91456 6.15101 6.16182 6.21607 6.23172 6.59171 6.67624 7.29046 7.60591 7.72464 8.36216 8.61603 9.24470 10.86543 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.002654 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.469760 B =10549.326880 C =10969.731599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 O -0.549 6.549 4 C 0.098 3.902 5 N -0.732 5.732 6 C 0.531 3.469 7 O -0.520 6.520 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.101 4.101 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.381 0.619 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.402 0.598 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.557 1.859 25.839 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.124 3.876 3 O -0.355 6.355 4 C -0.026 4.026 5 N -0.387 5.387 6 C 0.318 3.682 7 O -0.394 6.394 8 C -0.303 4.303 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.141 4.141 23 C -0.119 4.119 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.229 0.771 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.237 0.763 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.956 0.224 25.500 25.519 hybrid contribution -0.868 1.974 -0.603 2.239 sum -1.824 2.198 24.897 25.060 Atomic orbital electron populations 1.21762 0.91165 1.03047 1.03298 1.20189 0.95394 0.81900 0.90160 1.86538 1.27319 1.24948 1.96737 1.21980 0.99693 0.96852 0.84111 1.45907 1.55310 1.32700 1.04826 1.20331 0.79742 0.84343 0.83828 1.90699 1.36653 1.25696 1.86354 1.23523 1.04415 1.03924 0.98461 1.85382 1.67628 1.38468 0.91946 1.22872 1.37234 1.15613 0.92589 0.90912 1.24998 0.95087 0.95585 0.97964 1.70021 1.36402 1.25757 1.18151 0.86161 0.79353 0.79747 0.80193 1.20273 1.20766 1.19690 1.20368 1.00988 0.94417 0.95822 1.21224 0.98666 0.93966 0.98928 1.21187 0.99377 1.00142 0.93026 1.21218 0.99838 0.94496 0.98123 1.21167 0.99852 0.94740 0.98359 1.21001 0.98454 1.00407 0.92042 0.91450 0.91136 0.90680 0.77094 0.91194 0.90507 0.76287 0.89210 0.89177 0.92199 0.85369 0.85819 0.86111 0.86022 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.65 37.16 0.32 -0.86 16 2 C 0.16 1.51 0.88 -91.77 -0.08 1.43 16 3 O -0.55 -4.96 11.71 -35.23 -0.41 -5.37 16 4 C 0.10 1.14 4.09 -4.04 -0.02 1.13 16 5 N -0.73 -9.90 5.15 -60.29 -0.31 -10.21 16 6 C 0.53 9.96 7.85 -10.98 -0.09 9.87 16 7 O -0.52 -11.79 15.86 5.56 0.09 -11.70 16 8 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.12 -1.03 4.80 -104.62 -0.50 -1.53 16 19 C -0.11 -1.00 9.14 -39.58 -0.36 -1.36 16 20 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 21 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 23 C -0.10 -0.84 9.35 -39.58 -0.37 -1.21 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.62 6.86 -51.93 -0.36 0.26 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.38 2.62 9.04 45.56 0.41 3.03 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.92 6.51 -51.93 -0.34 0.59 16 30 H 0.40 4.61 7.19 -40.82 -0.29 4.32 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.13 1.14 6.17 -52.48 -0.32 0.81 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.13 0.97 7.48 -52.49 -0.39 0.58 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -34.69 337.71 -8.14 -42.83 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.22 Total: 4.74 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.87 Total: -12.44 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.42 Total: -35.75 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.32 Total: -17.07 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.69 -8.14 -42.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267451880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.873 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds