Wall clock time and date at job start Tue Mar 31 2020 07:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47212 * 2 1 4 4 C 1.53005 * 109.47174 * 239.99857 * 2 1 3 5 5 N 1.46496 * 109.46757 * 59.99959 * 4 2 1 6 6 C 1.34777 * 119.99773 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00218 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00072 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47029 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99659 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00440 * 0.02562 * 10 9 8 12 12 C 1.38806 * 119.99918 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99919 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00197 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46833 * 90.00290 * 14 12 10 16 16 H 1.48491 * 109.47391 * 210.00340 * 14 12 10 17 17 H 1.48497 * 109.47105 * 330.00684 * 14 12 10 18 18 C 1.50706 * 109.47186 * 120.00268 * 2 1 3 19 19 C 1.38233 * 120.00109 * 89.72231 * 18 2 1 20 20 C 1.38238 * 119.99749 * 179.78525 * 19 18 2 21 21 C 1.38234 * 120.00078 * 0.44989 * 20 19 18 22 22 C 1.38238 * 120.00032 * 359.80374 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46785 * 299.99904 * 1 2 3 25 25 H 1.09002 * 109.47171 * 59.99883 * 1 2 3 26 26 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 27 27 H 0.96705 * 113.99611 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47197 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47101 * 300.00440 * 4 2 1 30 30 H 0.96997 * 120.00357 * 359.97438 * 5 4 2 31 31 H 1.09001 * 109.47294 * 300.00373 * 8 6 5 32 32 H 1.09001 * 109.46745 * 59.99961 * 8 6 5 33 33 H 0.97003 * 120.00098 * 179.97438 * 13 12 10 34 34 H 1.08004 * 119.99934 * 0.02562 * 19 18 2 35 35 H 1.07999 * 119.99925 * 180.27297 * 20 19 18 36 36 H 1.08002 * 120.00276 * 179.83134 * 21 20 19 37 37 H 1.08000 * 120.00524 * 180.02562 * 22 21 20 38 38 H 1.07999 * 120.00181 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5516 -0.0307 -2.4454 6 6 1.8768 -0.4915 -3.6695 7 8 2.5741 -1.4775 -3.7808 8 6 1.3740 0.2186 -4.9000 9 16 1.9774 -0.6346 -6.3778 10 6 1.2614 0.3781 -7.6294 11 1 0.6587 1.2311 -7.3548 12 6 1.4729 0.0801 -8.9685 13 7 2.2079 -0.9593 -9.3033 14 14 0.7133 1.1531 -10.2955 15 1 1.6545 2.2467 -10.6468 16 1 0.4386 0.3302 -11.5006 17 1 -0.5572 1.7357 -9.7939 18 6 2.0324 -0.7105 1.2305 19 6 2.2573 -2.0740 1.1979 20 6 2.7223 -2.7249 2.3253 21 6 2.9535 -2.0139 3.4879 22 6 2.7236 -0.6512 3.5221 23 6 2.2630 0.0006 2.3934 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.9704 1.4235 -0.0004 28 1 3.1300 -0.7217 -1.2490 29 1 1.6766 -1.7489 -1.2493 30 1 0.9937 0.7577 -2.3564 31 1 0.2840 0.2186 -4.8996 32 1 1.7373 1.2463 -4.9003 33 1 2.3554 -1.1678 -10.2391 34 1 2.0734 -2.6301 0.2905 35 1 2.9023 -3.7895 2.2985 36 1 3.3143 -2.5228 4.3696 37 1 2.9046 -0.0955 4.4303 38 1 2.0829 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267451880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:22 Heat of formation + Delta-G solvation = -91.546917 kcal Electronic energy + Delta-G solvation = -20537.566004 eV Core-core repulsion = 17276.903996 eV Total energy + Delta-G solvation = -3260.662008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28098 -40.24458 -38.29877 -35.42258 -34.58384 -33.40557 -31.79594 -31.19095 -30.08168 -27.79326 -27.22195 -24.12371 -23.31086 -21.76316 -21.29069 -19.87426 -18.72534 -18.07672 -17.32415 -16.89312 -16.86540 -16.79278 -16.02474 -15.82036 -15.59277 -15.45210 -14.89475 -14.61017 -14.47095 -14.18505 -14.13891 -13.58148 -13.35135 -13.23988 -13.16706 -12.94588 -12.88003 -12.61648 -12.59032 -12.12209 -11.74487 -11.71799 -11.22013 -11.14256 -10.93081 -10.28243 -10.15987 -9.83688 -9.71965 -8.66855 -8.34727 -6.12770 0.36425 0.48451 1.26492 1.42743 1.46721 1.57459 1.59052 2.22065 2.28087 2.82929 2.99415 3.19166 3.32071 3.52996 3.59313 3.90702 3.98400 4.11111 4.15581 4.29114 4.29980 4.50912 4.53579 4.58190 4.66186 4.70654 4.80526 4.89260 5.06207 5.15141 5.19370 5.35270 5.42105 5.56026 5.60717 5.62295 6.08294 6.19984 6.45403 6.66812 7.06608 7.20875 8.74518 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.002654 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.469760 B =10549.326880 C =10969.731599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.179 3.821 3 O -0.553 6.553 4 C 0.098 3.902 5 N -0.705 5.705 6 C 0.534 3.466 7 O -0.565 6.565 8 C -0.129 4.129 9 S -0.150 6.150 10 C -0.546 4.546 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.258 1.258 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.106 4.106 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.390 0.610 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.416 0.584 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.271 0.729 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 3.632 27.317 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.137 3.863 3 O -0.361 6.361 4 C -0.026 4.026 5 N -0.360 5.360 6 C 0.320 3.680 7 O -0.444 6.444 8 C -0.281 4.281 9 S 0.077 5.923 10 C -0.694 4.694 11 H 0.101 0.899 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.182 1.182 18 C -0.124 4.124 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.124 4.124 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.240 0.760 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.254 0.746 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.026 2.033 27.030 27.182 hybrid contribution -0.520 1.420 -0.884 1.751 sum -2.546 3.452 26.146 26.495 Atomic orbital electron populations 1.21802 0.90671 1.03362 1.03663 1.19997 0.95627 0.81721 0.88907 1.86522 1.28366 1.24569 1.96627 1.22129 0.99317 0.96994 0.84165 1.45637 1.54022 1.32521 1.03799 1.20067 0.79428 0.83724 0.84800 1.90690 1.38958 1.27717 1.87020 1.23366 1.05331 1.03795 0.95574 1.85553 1.69140 1.41176 0.96416 1.23206 1.37310 1.15764 0.93115 0.89921 1.26139 0.95387 0.96989 1.00694 1.70182 1.37969 1.27806 1.18833 0.84944 0.78817 0.77645 0.76521 1.19301 1.20281 1.18198 1.20331 1.01714 0.94380 0.95958 1.21305 0.99611 0.94293 0.99264 1.21424 0.99249 1.00983 0.93092 1.21527 0.99212 0.94730 0.98559 1.21476 0.99049 0.94979 0.98916 1.21139 0.98448 1.00811 0.92015 0.90730 0.91097 0.90470 0.75986 0.91937 0.90867 0.74647 0.87190 0.87295 0.91983 0.85950 0.84658 0.84021 0.83911 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.65 71.98 0.62 -1.54 16 2 C 0.18 3.03 0.88 -11.54 -0.01 3.02 16 3 O -0.55 -8.88 11.71 -148.98 -1.74 -10.63 16 4 C 0.10 2.22 4.09 86.38 0.35 2.57 16 5 N -0.71 -18.19 5.15 -463.05 -2.38 -20.57 16 6 C 0.53 19.82 7.85 87.66 0.69 20.51 16 7 O -0.57 -26.22 15.86 -3.03 -0.05 -26.27 16 8 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.55 -31.32 9.50 67.96 0.65 -30.68 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.72 5.49 84.86 0.47 1.19 16 13 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 14 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 C -0.12 -2.06 4.80 -19.86 -0.10 -2.15 16 19 C -0.13 -2.23 9.14 22.27 0.20 -2.03 16 20 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 21 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 22 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 23 C -0.11 -1.56 9.35 22.27 0.21 -1.35 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.09 6.86 -2.39 -0.02 1.07 16 26 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.39 4.66 9.04 -74.05 -0.67 3.99 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.76 6.51 -2.39 -0.02 1.74 16 30 H 0.42 8.61 7.19 -92.71 -0.67 7.94 16 31 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 32 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.12 2.21 6.17 -2.91 -0.02 2.19 16 35 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.14 1.75 7.48 -2.91 -0.02 1.73 16 Total: -1.00 -76.08 337.71 0.92 -75.16 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.25 Total: 21.77 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.19 Total: -19.76 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -2.10 Total: -76.49 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.79 Total: -36.90 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -76.08 0.92 -75.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267451880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.384 kcal (2) G-P(sol) polarization free energy of solvation -76.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds