Wall clock time and date at job start Tue Mar 31 2020 07:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 N 1.46497 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00481 * 263.25116 * 4 3 2 6 6 H 1.07999 * 120.00252 * 188.09608 * 5 4 3 7 7 C 1.38946 * 119.99585 * 8.08797 * 5 4 3 8 8 N 1.31412 * 120.00387 * 26.10623 * 7 5 4 9 9 Si 1.86804 * 120.00068 * 206.09794 * 7 5 4 10 10 H 1.48491 * 109.47088 * 84.99064 * 9 7 5 11 11 H 1.48493 * 109.47284 * 204.99230 * 9 7 5 12 12 H 1.48505 * 109.46715 * 324.99109 * 9 7 5 13 13 C 1.34781 * 119.99817 * 83.25478 * 4 3 2 14 14 O 1.21296 * 119.99604 * 359.97438 * 13 4 3 15 15 C 1.50699 * 120.00060 * 179.97438 * 13 4 3 16 16 S 1.81396 * 109.46943 * 179.97438 * 15 13 4 17 17 C 1.76204 * 102.99970 * 180.02562 * 16 15 13 18 18 C 1.38925 * 120.02620 * 180.02562 * 17 16 15 19 19 C 1.38087 * 119.97421 * 180.02562 * 18 17 16 20 20 C 1.38707 * 120.02670 * 0.02562 * 19 18 17 21 21 O 1.36005 * 119.97522 * 179.97438 * 20 19 18 22 22 C 1.38718 * 120.05162 * 0.22976 * 20 19 18 23 23 C 1.38089 * 120.01790 * 359.49319 * 22 20 19 24 24 H 1.09008 * 109.47380 * 299.99791 * 1 2 3 25 25 H 1.08992 * 109.47306 * 60.00247 * 1 2 3 26 26 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47402 * 239.99811 * 2 1 3 28 28 H 1.09000 * 109.46859 * 120.00149 * 2 1 3 29 29 H 1.09008 * 109.46765 * 59.99833 * 3 2 1 30 30 H 1.08992 * 109.47289 * 300.00172 * 3 2 1 31 31 H 0.96992 * 120.00111 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46870 * 59.99779 * 15 13 4 33 33 H 1.09001 * 109.46983 * 299.99700 * 15 13 4 34 34 H 1.08003 * 120.00892 * 359.97438 * 18 17 16 35 35 H 1.08003 * 119.98140 * 179.97438 * 19 18 17 36 36 H 0.96692 * 114.00242 * 90.00057 * 21 20 19 37 37 H 1.07988 * 119.99031 * 179.74723 * 22 20 19 38 38 H 1.08004 * 120.00914 * 180.25702 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1900 1.5821 1.1799 6 1 5.2620 1.7135 1.1695 7 6 3.5052 1.5549 2.3886 8 7 2.3619 0.9137 2.4817 9 14 4.2097 2.4295 3.8813 10 1 3.8115 3.8597 3.8507 11 1 3.6868 1.7965 5.1185 12 1 5.6912 2.3276 3.8611 13 6 4.1793 1.3052 -1.1583 14 8 3.5731 1.1812 -2.2016 15 6 5.6863 1.3057 -1.1578 16 16 6.2915 1.1036 -2.8558 17 6 8.0423 1.1270 -2.6580 18 6 8.8690 0.9956 -3.7667 19 6 10.2408 1.0135 -3.6104 20 6 10.7936 1.1621 -2.3469 21 8 12.1449 1.1791 -2.1941 22 6 9.9691 1.2881 -1.2384 23 6 8.5970 1.2762 -1.3931 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 1.8840 0.8944 3.3255 32 1 6.0497 0.4826 -0.5425 33 1 6.0491 2.2502 -0.7523 34 1 8.4388 0.8786 -4.7504 35 1 10.8836 0.9109 -4.4722 36 1 12.5364 2.0612 -2.2533 37 1 10.4005 1.3997 -0.2548 38 1 7.9552 1.3785 -0.5304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268235813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:57 Heat of formation + Delta-G solvation = -46.254582 kcal Electronic energy + Delta-G solvation = -20919.857873 eV Core-core repulsion = 17661.159889 eV Total energy + Delta-G solvation = -3258.697985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55883 -38.68715 -36.65664 -35.29786 -32.52595 -31.68389 -31.16247 -29.91227 -28.97858 -25.76629 -24.34040 -22.73937 -22.62135 -20.65791 -19.31963 -18.49297 -17.80558 -16.71444 -16.32617 -15.64196 -15.48650 -14.74699 -14.63668 -14.45742 -14.17518 -13.87487 -13.50835 -13.43326 -12.91769 -12.63005 -12.52253 -12.23883 -12.09309 -11.62116 -11.57930 -11.45502 -11.00356 -10.82129 -10.59057 -10.53733 -10.44600 -10.39440 -9.77381 -9.56522 -9.39282 -9.06003 -8.97271 -8.62595 -7.94037 -7.03495 -6.56351 -4.01867 1.11128 1.30813 1.77360 2.80616 2.99630 3.12385 3.12914 3.52916 3.68069 3.94563 4.16317 4.63340 4.83409 4.84604 4.90505 5.28979 5.48635 5.63722 5.65047 5.74244 5.93096 5.96406 6.09618 6.10374 6.13539 6.30676 6.36813 6.38014 6.59620 6.68237 6.81315 6.90487 6.97721 7.18033 7.34791 7.55535 7.56882 7.68356 8.25357 8.89214 9.32769 9.74546 10.42200 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.004171 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.957103 B = 6710.869414 C = 8136.525336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.140 3.860 4 N -0.428 5.428 5 C -0.349 4.349 6 H 0.099 0.901 7 C 0.044 3.956 8 N -0.842 5.842 9 Si 0.914 3.086 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.462 3.538 14 O -0.594 6.594 15 C -0.116 4.116 16 S -0.044 6.044 17 C -0.099 4.099 18 C -0.090 4.090 19 C -0.126 4.126 20 C 0.083 3.917 21 O -0.500 6.500 22 C -0.122 4.122 23 C -0.122 4.122 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.271 0.729 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.385 0.615 37 H 0.129 0.871 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.377 2.118 -4.148 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.017 3.983 4 N -0.145 5.145 5 C -0.476 4.476 6 H 0.117 0.883 7 C -0.163 4.163 8 N -0.479 5.479 9 Si 0.740 3.260 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.248 3.752 14 O -0.481 6.481 15 C -0.267 4.267 16 S 0.201 5.799 17 C -0.213 4.213 18 C -0.115 4.115 19 C -0.147 4.147 20 C 0.036 3.964 21 O -0.310 6.310 22 C -0.142 4.142 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.240 0.760 37 H 0.147 0.853 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.998 1.288 -5.368 10.557 hybrid contribution 1.274 1.009 2.216 2.748 sum 10.273 2.297 -3.152 10.988 Atomic orbital electron populations 1.21583 0.97406 0.99950 1.00451 1.21734 0.93922 0.98241 1.01983 1.21337 0.79300 0.97124 1.00531 1.43730 1.05730 1.59943 1.05072 1.19613 0.93572 1.51425 0.83009 0.88329 1.25174 0.96300 0.95853 0.98949 1.70146 1.16246 1.34636 1.26866 0.86151 0.79409 0.79987 0.80411 1.20088 1.20852 1.19492 1.18964 0.86822 0.84650 0.84729 1.90580 1.69061 1.57019 1.31484 1.23702 1.00120 1.06401 0.96498 1.86048 0.92655 1.89448 1.11709 1.22332 0.99825 1.02867 0.96243 1.20612 0.92155 1.00923 0.97786 1.21282 0.94901 1.01684 0.96784 1.18396 0.82759 1.02936 0.92356 1.84861 1.17276 1.33971 1.94902 1.21313 0.93262 1.00842 0.98803 1.21219 0.95164 1.01893 0.96368 0.92982 0.94306 0.94138 0.94480 0.88887 0.88573 0.94306 0.91802 0.87675 0.87948 0.85111 0.85274 0.75951 0.85340 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.91 37.15 0.37 -2.17 16 2 C -0.12 -2.69 5.74 -26.73 -0.15 -2.84 16 3 C 0.14 3.30 4.52 -4.04 -0.02 3.28 16 4 N -0.43 -10.36 2.64 -114.81 -0.30 -10.67 16 5 C -0.35 -8.27 9.25 -14.93 -0.14 -8.41 16 6 H 0.10 2.18 6.47 -52.49 -0.34 1.84 16 7 C 0.04 1.02 4.88 -17.47 -0.09 0.94 16 8 N -0.84 -20.04 8.73 55.50 0.48 -19.55 16 9 Si 0.91 18.17 29.63 -169.99 -5.04 13.14 16 10 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 C 0.46 10.92 7.60 -10.98 -0.08 10.84 16 14 O -0.59 -15.48 15.56 5.54 0.09 -15.40 16 15 C -0.12 -2.24 3.20 36.00 0.12 -2.13 16 16 S -0.04 -0.80 21.06 -107.50 -2.26 -3.06 16 17 C -0.10 -1.51 6.11 -39.08 -0.24 -1.75 16 18 C -0.09 -1.20 9.79 -39.38 -0.39 -1.58 16 19 C -0.13 -1.49 9.98 -39.46 -0.39 -1.89 16 20 C 0.08 1.01 6.70 -39.23 -0.26 0.75 16 21 O -0.50 -5.24 13.50 -19.76 -0.27 -5.51 16 22 C -0.12 -1.56 9.98 -39.46 -0.39 -1.95 16 23 C -0.12 -1.75 9.36 -39.38 -0.37 -2.12 16 24 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 2.25 6.42 -51.93 -0.33 1.92 16 29 H 0.10 2.33 5.81 -51.92 -0.30 2.02 16 30 H 0.04 0.92 7.63 -51.93 -0.40 0.53 16 31 H 0.27 6.13 8.31 -40.82 -0.34 5.80 16 32 H 0.11 1.95 7.61 -51.92 -0.40 1.56 16 33 H 0.10 1.83 7.40 -51.92 -0.38 1.44 16 34 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.39 2.11 9.06 45.56 0.41 2.52 16 37 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.13 1.85 5.87 -52.48 -0.31 1.54 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -28.30 330.76 -8.49 -36.80 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.14 Total: 8.29 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.04 Total: -9.02 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: 0.18 Total: -30.22 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.18 Total: -20.90 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.04 Total: 13.14 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.26 Total: -3.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.30 -8.49 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268235813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.458 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds