Wall clock time and date at job start Tue Mar 31 2020 07:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 N 1.46497 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00481 * 263.25116 * 4 3 2 6 6 H 1.07999 * 120.00252 * 188.09608 * 5 4 3 7 7 C 1.38946 * 119.99585 * 8.08797 * 5 4 3 8 8 N 1.31412 * 120.00387 * 26.10623 * 7 5 4 9 9 Si 1.86804 * 120.00068 * 206.09794 * 7 5 4 10 10 H 1.48491 * 109.47088 * 84.99064 * 9 7 5 11 11 H 1.48493 * 109.47284 * 204.99230 * 9 7 5 12 12 H 1.48505 * 109.46715 * 324.99109 * 9 7 5 13 13 C 1.34781 * 119.99817 * 83.25478 * 4 3 2 14 14 O 1.21296 * 119.99604 * 359.97438 * 13 4 3 15 15 C 1.50699 * 120.00060 * 179.97438 * 13 4 3 16 16 S 1.81396 * 109.46943 * 179.97438 * 15 13 4 17 17 C 1.76204 * 102.99970 * 180.02562 * 16 15 13 18 18 C 1.38925 * 120.02620 * 180.02562 * 17 16 15 19 19 C 1.38087 * 119.97421 * 180.02562 * 18 17 16 20 20 C 1.38707 * 120.02670 * 0.02562 * 19 18 17 21 21 O 1.36005 * 119.97522 * 179.97438 * 20 19 18 22 22 C 1.38718 * 120.05162 * 0.22976 * 20 19 18 23 23 C 1.38089 * 120.01790 * 359.49319 * 22 20 19 24 24 H 1.09008 * 109.47380 * 299.99791 * 1 2 3 25 25 H 1.08992 * 109.47306 * 60.00247 * 1 2 3 26 26 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47402 * 239.99811 * 2 1 3 28 28 H 1.09000 * 109.46859 * 120.00149 * 2 1 3 29 29 H 1.09008 * 109.46765 * 59.99833 * 3 2 1 30 30 H 1.08992 * 109.47289 * 300.00172 * 3 2 1 31 31 H 0.96992 * 120.00111 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46870 * 59.99779 * 15 13 4 33 33 H 1.09001 * 109.46983 * 299.99700 * 15 13 4 34 34 H 1.08003 * 120.00892 * 359.97438 * 18 17 16 35 35 H 1.08003 * 119.98140 * 179.97438 * 19 18 17 36 36 H 0.96692 * 114.00242 * 90.00057 * 21 20 19 37 37 H 1.07988 * 119.99031 * 179.74723 * 22 20 19 38 38 H 1.08004 * 120.00914 * 180.25702 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.1900 1.5821 1.1799 6 1 5.2620 1.7135 1.1695 7 6 3.5052 1.5549 2.3886 8 7 2.3619 0.9137 2.4817 9 14 4.2097 2.4295 3.8813 10 1 3.8115 3.8597 3.8507 11 1 3.6868 1.7965 5.1185 12 1 5.6912 2.3276 3.8611 13 6 4.1793 1.3052 -1.1583 14 8 3.5731 1.1812 -2.2016 15 6 5.6863 1.3057 -1.1578 16 16 6.2915 1.1036 -2.8558 17 6 8.0423 1.1270 -2.6580 18 6 8.8690 0.9956 -3.7667 19 6 10.2408 1.0135 -3.6104 20 6 10.7936 1.1621 -2.3469 21 8 12.1449 1.1791 -2.1941 22 6 9.9691 1.2881 -1.2384 23 6 8.5970 1.2762 -1.3931 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 1.8840 0.8944 3.3255 32 1 6.0497 0.4826 -0.5425 33 1 6.0491 2.2502 -0.7523 34 1 8.4388 0.8786 -4.7504 35 1 10.8836 0.9109 -4.4722 36 1 12.5364 2.0612 -2.2533 37 1 10.4005 1.3997 -0.2548 38 1 7.9552 1.3785 -0.5304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268235813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:57 Heat of formation + Delta-G solvation = -62.222965 kcal Electronic energy + Delta-G solvation = -20920.550315 eV Core-core repulsion = 17661.159889 eV Total energy + Delta-G solvation = -3259.390426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53306 -40.51383 -37.56777 -37.15375 -34.26951 -33.49794 -32.24498 -31.06085 -30.38914 -27.53060 -26.09705 -23.78735 -23.62164 -22.41674 -21.13072 -19.48481 -19.18313 -18.27757 -17.99130 -16.73359 -16.47642 -16.39501 -16.30699 -16.04405 -15.52214 -15.39038 -14.85410 -14.57367 -14.44351 -14.22883 -13.87759 -13.63263 -13.25731 -13.18415 -13.17404 -12.83627 -12.61733 -12.48111 -12.30081 -12.12466 -12.06376 -11.45956 -11.40441 -11.10286 -10.81971 -10.49088 -10.47513 -10.05456 -9.79547 -8.35226 -8.33814 -5.87127 0.10073 0.31071 0.41407 1.39124 1.47641 1.50401 1.58613 1.90178 2.27379 2.55547 2.89649 3.04924 3.30759 3.85917 3.96030 4.05231 4.10979 4.29007 4.33910 4.42769 4.47610 4.52643 4.66695 4.69136 4.83920 4.98288 5.05921 5.13873 5.18737 5.26852 5.28648 5.37785 5.39748 5.53215 5.73560 5.75208 5.82594 6.42039 6.87822 7.06435 7.48887 7.91492 8.64268 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.004171 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.957103 B = 6710.869414 C = 8136.525336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.109 4.109 3 C 0.141 3.859 4 N -0.437 5.437 5 C -0.372 4.372 6 H 0.111 0.889 7 C 0.009 3.991 8 N -0.862 5.862 9 Si 0.982 3.018 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.446 3.554 14 O -0.627 6.627 15 C -0.100 4.100 16 S -0.082 6.082 17 C -0.114 4.114 18 C -0.091 4.091 19 C -0.124 4.124 20 C 0.095 3.905 21 O -0.505 6.505 22 C -0.129 4.129 23 C -0.130 4.130 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.016 0.984 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.275 0.725 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.410 0.590 37 H 0.146 0.854 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.505 2.516 -3.530 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.018 3.982 4 N -0.154 5.154 5 C -0.499 4.499 6 H 0.129 0.871 7 C -0.196 4.196 8 N -0.498 5.498 9 Si 0.805 3.195 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.185 1.185 13 C 0.234 3.766 14 O -0.516 6.516 15 C -0.250 4.250 16 S 0.162 5.838 17 C -0.227 4.227 18 C -0.115 4.115 19 C -0.144 4.144 20 C 0.047 3.953 21 O -0.319 6.319 22 C -0.149 4.149 23 C -0.154 4.154 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.270 0.730 37 H 0.164 0.836 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.163 1.699 -4.741 12.246 hybrid contribution 0.744 0.870 2.005 2.309 sum 11.907 2.569 -2.736 12.484 Atomic orbital electron populations 1.21505 0.94474 1.01457 1.01059 1.21584 0.96486 0.96868 0.99842 1.21304 0.79685 0.97690 0.99503 1.43978 1.06021 1.59691 1.05685 1.19995 0.94390 1.52413 0.83089 0.87140 1.25963 0.96708 0.95766 1.01209 1.70223 1.17127 1.34781 1.27664 0.85121 0.79141 0.78345 0.76849 1.20204 1.20905 1.18500 1.19622 0.88685 0.84178 0.84106 1.90540 1.70269 1.58363 1.32470 1.23432 0.96942 1.07073 0.97598 1.86039 0.96059 1.90698 1.10987 1.22209 0.97517 1.05539 0.97482 1.20820 0.92750 1.00260 0.97714 1.21549 0.94397 1.00657 0.97787 1.18498 0.83535 1.01045 0.92189 1.84800 1.16092 1.36182 1.94798 1.21508 0.92589 1.00721 1.00061 1.21272 0.96033 1.02213 0.95913 0.92607 0.93388 0.92201 0.96535 0.90783 0.89224 0.95327 0.91528 0.87334 0.86765 0.84093 0.82517 0.73038 0.83643 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.91 71.98 0.71 -3.97 16 2 C -0.11 -5.00 5.74 30.59 0.18 -4.82 16 3 C 0.14 6.85 4.52 86.38 0.39 7.25 16 4 N -0.44 -21.72 2.64 -635.54 -1.68 -23.40 16 5 C -0.37 -17.72 9.25 84.04 0.78 -16.94 16 6 H 0.11 4.85 6.47 -2.91 -0.02 4.83 16 7 C 0.01 0.40 4.88 84.93 0.41 0.82 16 8 N -0.86 -41.04 8.73 21.66 0.19 -40.85 16 9 Si 0.98 36.60 29.63 68.60 2.03 38.63 16 10 H -0.28 -10.33 7.11 99.48 0.71 -9.62 16 11 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 12 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 13 C 0.45 21.75 7.60 87.66 0.67 22.42 16 14 O -0.63 -33.93 15.56 -3.08 -0.05 -33.98 16 15 C -0.10 -3.93 3.20 71.24 0.23 -3.70 16 16 S -0.08 -3.01 21.06 -56.49 -1.19 -4.20 16 17 C -0.11 -3.41 6.11 22.60 0.14 -3.27 16 18 C -0.09 -2.28 9.79 22.40 0.22 -2.06 16 19 C -0.12 -2.57 9.98 22.35 0.22 -2.34 16 20 C 0.09 2.01 6.70 22.50 0.15 2.16 16 21 O -0.51 -8.69 13.50 -93.61 -1.26 -9.95 16 22 C -0.13 -3.00 9.98 22.35 0.22 -2.77 16 23 C -0.13 -3.60 9.36 22.40 0.21 -3.39 16 24 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 3.67 6.42 -2.39 -0.02 3.65 16 29 H 0.09 4.43 5.81 -2.38 -0.01 4.42 16 30 H 0.03 1.41 7.63 -2.39 -0.02 1.39 16 31 H 0.27 12.33 8.31 -92.71 -0.77 11.56 16 32 H 0.11 4.11 7.61 -2.39 -0.02 4.09 16 33 H 0.11 4.12 7.40 -2.39 -0.02 4.10 16 34 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.41 2.84 9.06 -74.06 -0.67 2.17 16 37 H 0.15 2.82 8.06 -2.92 -0.02 2.80 16 38 H 0.13 3.52 5.87 -2.91 -0.02 3.51 16 Total: -1.00 -61.10 330.76 2.98 -58.12 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.41 Total: 26.27 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 4.53 Total: -10.63 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -1.49 Total: -64.25 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.31 Total: -43.93 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -1.19 Total: -4.20 kcal Total: -61.10 2.98 -58.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268235813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.104 kcal (2) G-P(sol) polarization free energy of solvation -61.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds