Wall clock time and date at job start Tue Mar 31 2020 07:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 C 1.38264 * 119.94355 * 269.72899 * 5 4 2 7 7 C 1.38149 * 120.05531 * 179.72452 * 6 5 4 8 8 C 1.38736 * 119.94201 * 0.56783 * 7 6 5 9 9 O 1.35894 * 120.05528 * 179.68272 * 8 7 6 10 10 C 1.38736 * 119.88573 * 359.70849 * 8 7 6 11 11 C 1.38143 * 119.94721 * 359.97438 * 10 8 7 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46661 * 60.00586 * 21 19 17 23 23 H 1.48501 * 109.47391 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47355 * 300.00441 * 21 19 17 25 25 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 27 27 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 29 29 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 30 30 H 1.08004 * 119.97240 * 359.97438 * 6 5 4 31 31 H 1.08001 * 120.02900 * 180.24957 * 7 6 5 32 32 H 0.96714 * 113.99870 * 270.02338 * 9 8 7 33 33 H 1.08000 * 120.02558 * 179.97438 * 10 8 7 34 34 H 1.07996 * 119.97261 * 179.97438 * 11 10 8 35 35 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 36 36 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 37 37 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 38 38 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.3282 -1.5854 0.7197 7 6 5.7052 -1.4873 0.7715 8 6 6.2990 -0.4199 1.4295 9 8 7.6534 -0.3245 1.4875 10 6 5.5078 0.5495 2.0287 11 6 4.1313 0.4502 1.9684 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8533 1.1572 -2.4129 15 6 2.6382 -0.7314 -3.5905 16 16 2.6935 0.4302 -4.9775 17 6 3.2911 -0.6364 -6.2462 18 1 3.5008 -1.6728 -6.0262 19 6 3.4914 -0.1450 -7.5288 20 7 3.2353 1.1180 -7.7971 21 14 4.1256 -1.2755 -8.8737 22 1 3.1742 -2.3997 -9.0648 23 1 4.2531 -0.5134 -10.1419 24 1 5.4541 -1.8123 -8.4836 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 3.8654 -2.4189 0.2120 31 1 6.3189 -2.2435 0.3047 32 1 8.0459 -0.7611 2.2561 33 1 5.9677 1.3811 2.5419 34 1 3.5150 1.2044 2.4350 35 1 2.2490 -1.6318 -1.1527 36 1 3.6381 -1.1236 -3.4054 37 1 1.9643 -1.5536 -3.8314 38 1 3.3757 1.4615 -8.6933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269107672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:10 Heat of formation + Delta-G solvation = -69.013741 kcal Electronic energy + Delta-G solvation = -20682.665885 eV Core-core repulsion = 17422.980988 eV Total energy + Delta-G solvation = -3259.684896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13214 -39.18293 -37.32624 -35.49317 -32.40063 -32.11065 -31.16430 -30.37437 -28.47384 -26.24260 -25.45056 -23.03377 -22.29824 -21.10808 -20.20703 -18.60426 -17.81300 -16.49376 -16.33962 -15.91923 -15.65361 -15.45428 -14.82873 -14.77477 -14.18327 -14.03951 -13.65193 -13.56625 -13.20728 -12.99739 -12.68461 -12.54584 -12.37494 -12.03659 -11.87998 -11.80760 -11.24600 -11.02403 -11.01597 -10.99286 -10.74058 -10.63368 -9.79244 -9.32255 -9.16686 -9.03332 -8.85636 -8.60235 -8.20095 -6.46132 -6.18517 -3.88710 1.03904 1.18607 3.08137 3.17041 3.25540 3.29595 3.33823 3.42854 3.76579 4.01771 4.23560 4.51986 4.61725 4.79009 4.81561 5.03089 5.16013 5.16462 5.23346 5.26206 5.34627 5.49762 5.53304 5.64472 5.68143 5.73641 5.81828 5.93314 6.05075 6.10102 6.17822 6.23431 6.25670 6.39261 6.63728 6.74126 7.46191 7.62031 7.77639 8.37938 8.69074 9.26586 10.88922 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003764 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.746350 B = 7437.613092 C = 8655.580570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 H 0.089 0.911 4 C -0.087 4.087 5 C -0.087 4.087 6 C -0.096 4.096 7 C -0.140 4.140 8 C 0.099 3.901 9 O -0.499 6.499 10 C -0.142 4.142 11 C -0.100 4.100 12 N -0.732 5.732 13 C 0.534 3.466 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.387 0.613 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -7.439 23.497 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.107 0.893 4 C -0.125 4.125 5 C -0.087 4.087 6 C -0.114 4.114 7 C -0.159 4.159 8 C 0.054 3.946 9 O -0.308 6.308 10 C -0.161 4.161 11 C -0.118 4.118 12 N -0.386 5.386 13 C 0.320 3.680 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.242 0.758 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.228 0.772 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.232 -4.989 22.744 23.286 hybrid contribution 1.049 -2.796 -0.426 3.017 sum 1.281 -7.786 22.318 23.672 Atomic orbital electron populations 1.22196 0.95192 1.02064 1.02762 1.20854 0.93705 0.97716 0.83438 0.89326 1.20939 0.91207 1.01963 0.98380 1.19834 0.95565 0.95148 0.98153 1.20893 0.92942 0.98868 0.98698 1.21428 0.95334 0.98230 1.00885 1.18494 0.82863 0.94615 0.98597 1.84874 1.16732 1.79189 1.50049 1.21402 0.93989 0.99688 1.01008 1.20919 0.94154 0.97563 0.99165 1.46063 1.69392 1.13736 1.09419 1.20263 0.76725 0.87228 0.83779 1.90692 1.48270 1.15729 1.84516 1.23528 1.03593 1.04796 0.98474 1.85385 1.86439 1.12976 0.98498 1.22831 1.51204 0.98110 0.96262 0.91037 1.24982 0.95084 0.95523 0.97927 1.70009 1.45545 1.13257 1.21522 0.86237 0.79317 0.80036 0.79989 1.19951 1.20806 1.19948 0.91895 0.91502 0.92544 0.89420 0.90338 0.85799 0.85406 0.75778 0.85520 0.85601 0.77188 0.89385 0.89368 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.15 1.68 2.56 -67.93 -0.17 1.51 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 4 C -0.09 -0.70 4.89 -27.88 -0.14 -0.84 16 5 C -0.09 -0.85 4.95 -104.60 -0.52 -1.37 16 6 C -0.10 -0.96 9.09 -39.60 -0.36 -1.32 16 7 C -0.14 -1.51 9.99 -39.43 -0.39 -1.90 16 8 C 0.10 1.10 6.71 -39.21 -0.26 0.84 16 9 O -0.50 -5.13 13.50 -19.41 -0.26 -5.39 16 10 C -0.14 -1.50 9.99 -39.43 -0.39 -1.89 16 11 C -0.10 -1.00 9.69 -39.61 -0.38 -1.38 16 12 N -0.73 -9.74 4.53 -53.81 -0.24 -9.99 16 13 C 0.53 10.11 7.81 -10.98 -0.09 10.02 16 14 O -0.52 -11.92 15.53 5.55 0.09 -11.83 16 15 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.51 9.50 30.94 0.29 -15.21 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 20 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 21 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.12 1.00 7.59 -52.48 -0.40 0.60 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.39 1.87 9.06 45.56 0.41 2.28 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.39 4.14 7.85 -40.82 -0.32 3.82 16 36 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -36.71 343.78 -8.14 -44.85 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.47 Total: 3.99 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.94 Total: -13.80 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.49 Total: -35.79 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.18 Total: -17.22 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.71 -8.14 -44.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269107672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.161 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds