Wall clock time and date at job start Tue Mar 31 2020 07:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 C 1.38264 * 119.94355 * 269.72899 * 5 4 2 7 7 C 1.38149 * 120.05531 * 179.72452 * 6 5 4 8 8 C 1.38736 * 119.94201 * 0.56783 * 7 6 5 9 9 O 1.35894 * 120.05528 * 179.68272 * 8 7 6 10 10 C 1.38736 * 119.88573 * 359.70849 * 8 7 6 11 11 C 1.38143 * 119.94721 * 359.97438 * 10 8 7 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46661 * 60.00586 * 21 19 17 23 23 H 1.48501 * 109.47391 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47355 * 300.00441 * 21 19 17 25 25 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 27 27 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 29 29 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 30 30 H 1.08004 * 119.97240 * 359.97438 * 6 5 4 31 31 H 1.08001 * 120.02900 * 180.24957 * 7 6 5 32 32 H 0.96714 * 113.99870 * 270.02338 * 9 8 7 33 33 H 1.08000 * 120.02558 * 179.97438 * 10 8 7 34 34 H 1.07996 * 119.97261 * 179.97438 * 11 10 8 35 35 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 36 36 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 37 37 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 38 38 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.3282 -1.5854 0.7197 7 6 5.7052 -1.4873 0.7715 8 6 6.2990 -0.4199 1.4295 9 8 7.6534 -0.3245 1.4875 10 6 5.5078 0.5495 2.0287 11 6 4.1313 0.4502 1.9684 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8533 1.1572 -2.4129 15 6 2.6382 -0.7314 -3.5905 16 16 2.6935 0.4302 -4.9775 17 6 3.2911 -0.6364 -6.2462 18 1 3.5008 -1.6728 -6.0262 19 6 3.4914 -0.1450 -7.5288 20 7 3.2353 1.1180 -7.7971 21 14 4.1256 -1.2755 -8.8737 22 1 3.1742 -2.3997 -9.0648 23 1 4.2531 -0.5134 -10.1419 24 1 5.4541 -1.8123 -8.4836 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 3.8654 -2.4189 0.2120 31 1 6.3189 -2.2435 0.3047 32 1 8.0459 -0.7611 2.2561 33 1 5.9677 1.3811 2.5419 34 1 3.5150 1.2044 2.4350 35 1 2.2490 -1.6318 -1.1527 36 1 3.6381 -1.1236 -3.4054 37 1 1.9643 -1.5536 -3.8314 38 1 3.3757 1.4615 -8.6933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269107672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:09 Heat of formation + Delta-G solvation = -95.614296 kcal Electronic energy + Delta-G solvation = -20683.819371 eV Core-core repulsion = 17422.980988 eV Total energy + Delta-G solvation = -3260.838383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05542 -40.37603 -38.20520 -36.54993 -34.58575 -33.28434 -31.90988 -31.35984 -29.88788 -27.65751 -26.99047 -23.79090 -23.25572 -22.02842 -21.47942 -19.83251 -19.35557 -17.90552 -17.39823 -16.88177 -16.82829 -16.58742 -16.37953 -16.14968 -15.84097 -14.99337 -14.79035 -14.57545 -14.36214 -14.30908 -14.01938 -13.47618 -13.34424 -13.17222 -13.11991 -12.89134 -12.86453 -12.61221 -12.48113 -12.10652 -11.86293 -11.73228 -11.37071 -11.12947 -10.88235 -10.27819 -10.10290 -9.89734 -9.38102 -8.66604 -8.34465 -6.12683 0.28156 0.42491 1.27370 1.43599 1.47024 1.57094 1.66968 2.27017 2.34745 2.68833 2.99532 3.32509 3.33113 3.77505 3.91629 3.94151 4.07638 4.12129 4.28712 4.31811 4.44898 4.47943 4.50147 4.54795 4.79008 4.80743 4.92717 5.00778 5.10232 5.16609 5.32392 5.40297 5.41078 5.49347 5.54166 5.71002 5.95355 6.19424 6.56452 6.86509 7.06520 7.31316 8.74668 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003764 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.746350 B = 7437.613092 C = 8655.580570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.060 0.940 4 C -0.074 4.074 5 C -0.097 4.097 6 C -0.102 4.102 7 C -0.159 4.159 8 C 0.084 3.916 9 O -0.515 6.515 10 C -0.159 4.159 11 C -0.108 4.108 12 N -0.705 5.705 13 C 0.535 3.465 14 O -0.567 6.567 15 C -0.129 4.129 16 S -0.153 6.153 17 C -0.548 4.548 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.263 1.263 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.408 0.592 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.412 0.588 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -10.053 24.728 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.097 4.097 6 C -0.120 4.120 7 C -0.177 4.177 8 C 0.040 3.960 9 O -0.328 6.328 10 C -0.177 4.177 11 C -0.126 4.126 12 N -0.359 5.359 13 C 0.320 3.680 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.074 5.926 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.188 1.188 25 H 0.106 0.894 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.163 0.837 31 H 0.152 0.848 32 H 0.266 0.734 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.249 0.751 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.031 -7.659 24.041 25.232 hybrid contribution 1.126 -1.993 -0.645 2.378 sum 1.157 -9.652 23.396 25.335 Atomic orbital electron populations 1.22148 0.94113 1.03211 1.02217 1.21027 0.94482 0.96636 0.83708 0.92203 1.20918 0.89852 1.03280 0.97127 1.20085 0.96608 0.95001 0.98022 1.21204 0.92738 0.99529 0.98497 1.21642 0.96121 0.98563 1.01379 1.18730 0.83241 0.95081 0.98983 1.84806 1.16639 1.79769 1.51615 1.21618 0.94553 1.00029 1.01521 1.21233 0.94200 0.98063 0.99090 1.45848 1.67395 1.14401 1.08285 1.20000 0.76648 0.86582 0.84747 1.90681 1.50773 1.17765 1.85309 1.23372 1.05248 1.03203 0.96241 1.85574 1.86855 1.17502 1.02620 1.23176 1.51217 0.98436 0.96716 0.89969 1.26129 0.94988 0.97206 1.00741 1.70181 1.46830 1.15568 1.22255 0.85012 0.79080 0.77786 0.76170 1.18489 1.20341 1.18755 0.89396 0.95159 0.90481 0.86918 0.87729 0.83729 0.84840 0.73365 0.84744 0.83980 0.75067 0.87800 0.87221 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.48 71.98 0.68 -2.28 16 2 C 0.15 3.01 2.56 44.99 0.12 3.12 16 3 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 4 C -0.07 -0.92 4.89 29.85 0.15 -0.78 16 5 C -0.10 -1.67 4.95 -19.85 -0.10 -1.77 16 6 C -0.10 -1.80 9.09 22.25 0.20 -1.60 16 7 C -0.16 -3.24 9.99 22.37 0.22 -3.01 16 8 C 0.08 1.83 6.71 22.51 0.15 1.98 16 9 O -0.52 -10.41 13.50 -92.36 -1.25 -11.66 16 10 C -0.16 -3.23 9.99 22.37 0.22 -3.01 16 11 C -0.11 -1.99 9.69 22.25 0.22 -1.77 16 12 N -0.71 -17.32 4.53 -442.53 -2.01 -19.33 16 13 C 0.53 20.02 7.81 87.66 0.68 20.71 16 14 O -0.57 -26.82 15.53 -3.04 -0.05 -26.86 16 15 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 16 S -0.15 -8.67 20.57 -56.49 -1.16 -9.84 16 17 C -0.55 -31.82 9.50 67.96 0.65 -31.17 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.81 5.49 84.86 0.47 1.28 16 20 N -0.91 -56.91 13.22 21.65 0.29 -56.63 16 21 Si 1.00 44.12 29.55 68.60 2.03 46.14 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 0.93 8.08 -2.39 -0.02 0.91 16 29 H 0.10 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.14 1.82 7.59 -2.91 -0.02 1.80 16 31 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.41 3.72 9.06 -74.05 -0.67 3.05 16 33 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.41 7.24 7.85 -92.71 -0.73 6.51 16 36 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 37 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 38 H 0.27 15.72 8.31 -92.72 -0.77 14.95 16 Total: -1.00 -83.01 343.78 1.63 -81.39 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.32 Total: 19.90 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.10 Total: -23.11 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -1.72 Total: -75.95 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.29 Total: -38.52 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -83.01 1.63 -81.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269107672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.229 kcal (2) G-P(sol) polarization free energy of solvation -83.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds