Wall clock time and date at job start Tue Mar 31 2020 07:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47496 * 175.00184 * 4 2 1 6 6 C 1.38266 * 119.94508 * 89.99136 * 5 4 2 7 7 C 1.38149 * 120.05411 * 179.70262 * 6 5 4 8 8 C 1.38726 * 119.94477 * 0.28574 * 7 6 5 9 9 O 1.35900 * 120.05752 * 180.02562 * 8 7 6 10 10 C 1.38729 * 119.89044 * 359.97438 * 8 7 6 11 11 C 1.38144 * 119.94142 * 0.02562 * 10 8 7 12 12 N 1.46502 * 109.47090 * 119.99818 * 2 1 3 13 13 C 1.34774 * 120.00214 * 275.00013 * 12 2 1 14 14 O 1.21287 * 119.99950 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00247 * 179.97438 * 13 12 2 16 16 S 1.81001 * 109.47256 * 180.02562 * 15 13 12 17 17 C 1.76200 * 99.99936 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99890 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99870 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99932 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00123 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47350 * 89.99219 * 21 19 17 23 23 H 1.48497 * 109.46933 * 209.99726 * 21 19 17 24 24 H 1.48508 * 109.46794 * 329.99612 * 21 19 17 25 25 H 1.09002 * 109.47059 * 300.00131 * 1 2 3 26 26 H 1.08999 * 109.47011 * 59.99784 * 1 2 3 27 27 H 1.08995 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47463 * 54.99825 * 4 2 1 29 29 H 1.09005 * 109.46959 * 294.99973 * 4 2 1 30 30 H 1.08002 * 119.97497 * 359.97438 * 6 5 4 31 31 H 1.08000 * 120.02723 * 180.30253 * 7 6 5 32 32 H 0.96701 * 114.00536 * 89.99217 * 9 8 7 33 33 H 1.08007 * 120.02953 * 179.97438 * 10 8 7 34 34 H 1.08007 * 119.97030 * 180.02562 * 11 10 8 35 35 H 0.96998 * 120.00106 * 94.99744 * 12 2 1 36 36 H 1.09001 * 109.46812 * 300.00218 * 15 13 12 37 37 H 1.09004 * 109.46949 * 59.99835 * 15 13 12 38 38 H 0.96998 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 6 4.3282 -1.5824 -0.7148 7 6 5.7052 -1.4905 -0.7769 8 6 6.2990 -0.4232 -1.4348 9 8 7.6534 -0.3308 -1.4978 10 6 5.5079 0.5491 -2.0293 11 6 4.1314 0.4526 -1.9644 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6488 -0.7287 3.5878 16 16 2.7092 0.4342 4.9735 17 6 3.3125 -0.6310 6.2408 18 1 3.5218 -1.6674 6.0208 19 6 3.5187 -0.1381 7.5218 20 7 3.9689 -0.9339 8.4687 21 14 3.1560 1.6544 7.9025 22 1 1.7451 1.7908 8.3451 23 1 4.0611 2.1241 8.9819 24 1 3.3734 2.4732 6.6828 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2617 -2.1369 29 1 1.7517 -1.7715 -1.2056 30 1 3.8654 -2.4130 -0.2025 31 1 6.3189 -2.2490 -0.3139 32 1 8.0420 -0.7663 -2.2687 33 1 5.9678 1.3812 -2.5417 34 1 3.5150 1.2091 -2.4274 35 1 2.2490 -1.6317 1.1527 36 1 1.9759 -1.5505 3.8326 37 1 3.6480 -1.1213 3.3986 38 1 4.1127 -0.5895 9.3640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269107674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:12 Heat of formation + Delta-G solvation = -68.920615 kcal Electronic energy + Delta-G solvation = -20732.662722 eV Core-core repulsion = 17472.981864 eV Total energy + Delta-G solvation = -3259.680858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18020 -39.28110 -37.37304 -35.56918 -32.42036 -32.19781 -31.19418 -30.44394 -28.60982 -26.28547 -25.58702 -23.06497 -22.36210 -21.17425 -20.31332 -18.63012 -17.84795 -16.60009 -16.38201 -15.98107 -15.70458 -15.48452 -14.99630 -14.87956 -14.22848 -14.01017 -13.67286 -13.60473 -13.31827 -13.06593 -12.77089 -12.67264 -12.45127 -12.12813 -12.00623 -11.84953 -11.30739 -11.23696 -11.06610 -10.98597 -10.65933 -10.56855 -9.83300 -9.45570 -9.20057 -8.99376 -8.93987 -8.64049 -8.46898 -6.88526 -6.26722 -3.97904 1.00757 1.15638 2.80492 3.03709 3.33255 3.36391 3.40099 3.53007 3.69449 3.99396 4.35565 4.47411 4.58269 4.70737 4.77611 4.82053 4.99907 5.12485 5.13943 5.21006 5.26223 5.36512 5.46271 5.51159 5.60974 5.67936 5.78714 5.80253 5.97240 6.04479 6.06574 6.17253 6.23042 6.35404 6.60697 6.64614 7.44000 7.66589 7.96450 8.43795 8.55672 9.19721 10.82616 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.003898 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.088549 B = 7180.575826 C = 8253.702644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 H 0.089 0.911 4 C -0.087 4.087 5 C -0.088 4.088 6 C -0.096 4.096 7 C -0.140 4.140 8 C 0.099 3.901 9 O -0.499 6.499 10 C -0.143 4.143 11 C -0.100 4.100 12 N -0.730 5.730 13 C 0.533 3.467 14 O -0.520 6.520 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.387 0.613 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.396 0.604 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -2.782 -25.568 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.107 0.893 4 C -0.125 4.125 5 C -0.088 4.088 6 C -0.114 4.114 7 C -0.159 4.159 8 C 0.055 3.945 9 O -0.308 6.308 10 C -0.161 4.161 11 C -0.118 4.118 12 N -0.384 5.384 13 C 0.319 3.681 14 O -0.394 6.394 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.243 0.757 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.230 0.770 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.407 -0.516 -24.762 24.808 hybrid contribution 0.575 -1.482 0.008 1.590 sum -0.832 -1.997 -24.755 24.849 Atomic orbital electron populations 1.22195 0.95115 1.02149 1.02755 1.20874 0.93751 0.97692 0.83382 0.89308 1.20937 0.91241 1.02010 0.98311 1.19830 0.95532 0.95206 0.98256 1.20900 0.92957 0.98895 0.98625 1.21441 0.95334 0.98230 1.00858 1.18498 0.82870 0.94566 0.98565 1.84872 1.16775 1.79330 1.49872 1.21404 0.93978 0.99716 1.01033 1.20916 0.94156 0.97528 0.99208 1.46028 1.69138 1.13776 1.09449 1.20235 0.76821 0.87211 0.83853 1.90690 1.48539 1.15731 1.84485 1.23278 1.04397 1.03415 0.96381 1.84779 1.87102 1.16625 1.03032 1.22325 1.50539 0.98687 0.95295 0.89433 1.24704 0.93350 0.98250 0.94944 1.69938 1.43553 1.35788 1.02508 0.86741 0.79287 0.85308 0.80567 1.19212 1.19946 1.15914 0.91564 0.91832 0.92455 0.89372 0.90267 0.85757 0.85336 0.75736 0.85526 0.85624 0.77009 0.88624 0.88608 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.15 1.59 2.56 -67.93 -0.17 1.41 16 3 H 0.09 1.17 7.58 -51.92 -0.39 0.78 16 4 C -0.09 -0.66 4.89 -27.89 -0.14 -0.80 16 5 C -0.09 -0.83 4.95 -104.60 -0.52 -1.35 16 6 C -0.10 -0.92 9.09 -39.60 -0.36 -1.28 16 7 C -0.14 -1.47 9.99 -39.43 -0.39 -1.87 16 8 C 0.10 1.08 6.70 -39.22 -0.26 0.82 16 9 O -0.50 -5.02 13.50 -19.42 -0.26 -5.29 16 10 C -0.14 -1.45 9.99 -39.43 -0.39 -1.85 16 11 C -0.10 -0.96 9.69 -39.61 -0.38 -1.34 16 12 N -0.73 -9.17 4.53 -53.80 -0.24 -9.41 16 13 C 0.53 9.54 7.81 -10.99 -0.09 9.46 16 14 O -0.52 -11.31 15.53 5.55 0.09 -11.22 16 15 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 16 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 17 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 20 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 21 Si 0.86 22.11 27.74 -169.99 -4.72 17.40 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.12 0.96 7.57 -52.49 -0.40 0.56 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.39 1.81 9.06 45.56 0.41 2.22 16 33 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.40 3.90 7.82 -40.82 -0.32 3.58 16 36 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 37 H 0.10 1.79 8.14 -51.91 -0.42 1.36 16 38 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -36.34 341.04 -7.63 -43.97 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.50 Total: 3.63 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.92 Total: -12.44 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.53 Total: -35.52 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.18 Total: -16.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.72 Total: 17.40 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.34 -7.63 -43.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269107674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.954 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds