Wall clock time and date at job start Tue Mar 31 2020 07:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47496 * 175.00184 * 4 2 1 6 6 C 1.38266 * 119.94508 * 89.99136 * 5 4 2 7 7 C 1.38149 * 120.05411 * 179.70262 * 6 5 4 8 8 C 1.38726 * 119.94477 * 0.28574 * 7 6 5 9 9 O 1.35900 * 120.05752 * 180.02562 * 8 7 6 10 10 C 1.38729 * 119.89044 * 359.97438 * 8 7 6 11 11 C 1.38144 * 119.94142 * 0.02562 * 10 8 7 12 12 N 1.46502 * 109.47090 * 119.99818 * 2 1 3 13 13 C 1.34774 * 120.00214 * 275.00013 * 12 2 1 14 14 O 1.21287 * 119.99950 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00247 * 179.97438 * 13 12 2 16 16 S 1.81001 * 109.47256 * 180.02562 * 15 13 12 17 17 C 1.76200 * 99.99936 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99890 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99870 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99932 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00123 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47350 * 89.99219 * 21 19 17 23 23 H 1.48497 * 109.46933 * 209.99726 * 21 19 17 24 24 H 1.48508 * 109.46794 * 329.99612 * 21 19 17 25 25 H 1.09002 * 109.47059 * 300.00131 * 1 2 3 26 26 H 1.08999 * 109.47011 * 59.99784 * 1 2 3 27 27 H 1.08995 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47463 * 54.99825 * 4 2 1 29 29 H 1.09005 * 109.46959 * 294.99973 * 4 2 1 30 30 H 1.08002 * 119.97497 * 359.97438 * 6 5 4 31 31 H 1.08000 * 120.02723 * 180.30253 * 7 6 5 32 32 H 0.96701 * 114.00536 * 89.99217 * 9 8 7 33 33 H 1.08007 * 120.02953 * 179.97438 * 10 8 7 34 34 H 1.08007 * 119.97030 * 180.02562 * 11 10 8 35 35 H 0.96998 * 120.00106 * 94.99744 * 12 2 1 36 36 H 1.09001 * 109.46812 * 300.00218 * 15 13 12 37 37 H 1.09004 * 109.46949 * 59.99835 * 15 13 12 38 38 H 0.96998 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 6 4.3282 -1.5824 -0.7148 7 6 5.7052 -1.4905 -0.7769 8 6 6.2990 -0.4232 -1.4348 9 8 7.6534 -0.3308 -1.4978 10 6 5.5079 0.5491 -2.0293 11 6 4.1314 0.4526 -1.9644 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6488 -0.7287 3.5878 16 16 2.7092 0.4342 4.9735 17 6 3.3125 -0.6310 6.2408 18 1 3.5218 -1.6674 6.0208 19 6 3.5187 -0.1381 7.5218 20 7 3.9689 -0.9339 8.4687 21 14 3.1560 1.6544 7.9025 22 1 1.7451 1.7908 8.3451 23 1 4.0611 2.1241 8.9819 24 1 3.3734 2.4732 6.6828 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2617 -2.1369 29 1 1.7517 -1.7715 -1.2056 30 1 3.8654 -2.4130 -0.2025 31 1 6.3189 -2.2490 -0.3139 32 1 8.0420 -0.7663 -2.2687 33 1 5.9678 1.3812 -2.5417 34 1 3.5150 1.2091 -2.4274 35 1 2.2490 -1.6317 1.1527 36 1 1.9759 -1.5505 3.8326 37 1 3.6480 -1.1213 3.3986 38 1 4.1127 -0.5895 9.3640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269107674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:12 Heat of formation + Delta-G solvation = -95.236350 kcal Electronic energy + Delta-G solvation = -20733.803857 eV Core-core repulsion = 17472.981864 eV Total energy + Delta-G solvation = -3260.821994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07935 -40.39945 -38.21457 -36.56513 -34.68097 -33.31444 -31.91117 -31.38628 -29.93963 -27.85503 -26.99189 -23.79398 -23.27833 -22.05346 -21.50035 -19.89239 -19.35780 -17.96782 -17.43789 -17.08703 -16.83779 -16.59675 -16.39806 -16.13860 -15.78300 -15.04187 -14.93497 -14.75782 -14.38304 -14.35387 -14.08282 -13.52549 -13.37519 -13.33797 -13.14566 -13.01949 -12.92184 -12.61294 -12.46629 -12.10884 -11.88409 -11.84410 -11.37229 -11.17784 -10.93813 -10.54087 -10.12835 -9.90195 -9.38471 -8.99979 -8.52440 -6.22923 0.27922 0.42274 0.99127 1.30082 1.46280 1.55917 1.61483 2.23358 2.29484 2.68520 2.72422 2.85963 3.32686 3.75412 3.88256 3.91607 4.05546 4.09700 4.22122 4.31224 4.44378 4.45510 4.47848 4.54582 4.78823 4.80895 4.92953 5.00436 5.10108 5.16104 5.32704 5.40294 5.49408 5.52171 5.69902 5.70161 5.95157 6.10359 6.51851 6.86260 6.93006 7.25359 8.60132 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.003898 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.088549 B = 7180.575826 C = 8253.702644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.063 0.937 4 C -0.075 4.075 5 C -0.097 4.097 6 C -0.102 4.102 7 C -0.159 4.159 8 C 0.084 3.916 9 O -0.516 6.516 10 C -0.158 4.158 11 C -0.107 4.107 12 N -0.705 5.705 13 C 0.536 3.464 14 O -0.564 6.564 15 C -0.112 4.112 16 S -0.177 6.177 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.261 1.261 23 H -0.259 1.259 24 H -0.239 1.239 25 H 0.032 0.968 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.408 0.592 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 -3.006 -27.535 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.097 4.097 6 C -0.120 4.120 7 C -0.178 4.178 8 C 0.040 3.960 9 O -0.329 6.329 10 C -0.177 4.177 11 C -0.125 4.125 12 N -0.359 5.359 13 C 0.321 3.679 14 O -0.442 6.442 15 C -0.263 4.263 16 S 0.049 5.951 17 C -0.677 4.677 18 H 0.080 0.920 19 C -0.158 4.158 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.185 1.185 23 H -0.183 1.183 24 H -0.163 1.163 25 H 0.051 0.949 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.266 0.734 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.250 0.750 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.434 -0.795 -26.780 26.902 hybrid contribution 0.931 -1.524 0.462 1.845 sum -1.503 -2.319 -26.318 26.462 Atomic orbital electron populations 1.22149 0.94020 1.03203 1.02324 1.21047 0.94524 0.96702 0.83521 0.91864 1.20925 0.89818 1.03285 0.97243 1.20079 0.96598 0.94979 0.98016 1.21200 0.92727 0.99578 0.98509 1.21640 0.96142 0.98573 1.01440 1.18732 0.83223 0.95054 0.99003 1.84805 1.16738 1.79890 1.51431 1.21618 0.94556 0.99999 1.01478 1.21235 0.94163 0.98025 0.99051 1.45854 1.67179 1.14429 1.08413 1.19887 0.76777 0.86577 0.84615 1.90680 1.50887 1.17468 1.85187 1.23277 1.05878 1.02294 0.94809 1.84712 1.86900 1.18615 1.04836 1.22466 1.50369 0.98149 0.96684 0.91996 1.25540 0.93198 1.02186 0.94886 1.70012 1.44606 1.37707 1.03183 0.85883 0.79653 0.80459 0.80486 1.18513 1.18282 1.16301 0.94922 0.89392 0.90609 0.86854 0.87845 0.83847 0.85017 0.73377 0.84704 0.83864 0.75036 0.86841 0.87397 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.48 71.98 0.68 -1.99 16 2 C 0.15 2.74 2.56 44.99 0.12 2.86 16 3 H 0.06 1.57 7.58 -2.38 -0.02 1.55 16 4 C -0.08 -0.84 4.89 29.85 0.15 -0.70 16 5 C -0.10 -1.56 4.95 -19.85 -0.10 -1.66 16 6 C -0.10 -1.75 9.09 22.26 0.20 -1.55 16 7 C -0.16 -3.20 9.99 22.37 0.22 -2.98 16 8 C 0.08 1.78 6.70 22.50 0.15 1.93 16 9 O -0.52 -10.22 13.50 -92.42 -1.25 -11.47 16 10 C -0.16 -3.07 9.99 22.36 0.22 -2.85 16 11 C -0.11 -1.84 9.69 22.25 0.22 -1.63 16 12 N -0.70 -15.99 4.53 -442.52 -2.00 -18.00 16 13 C 0.54 18.54 7.81 87.66 0.68 19.23 16 14 O -0.56 -24.39 15.53 -3.05 -0.05 -24.44 16 15 C -0.11 -4.29 6.16 71.24 0.44 -3.85 16 16 S -0.18 -9.15 18.55 -56.49 -1.05 -10.20 16 17 C -0.53 -31.30 10.04 67.96 0.68 -30.62 16 18 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 19 C 0.05 2.81 5.50 84.86 0.47 3.28 16 20 N -0.92 -56.47 13.97 21.65 0.30 -56.16 16 21 Si 0.91 45.75 27.74 68.60 1.90 47.65 16 22 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.24 -12.05 6.74 99.48 0.67 -11.38 16 25 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.11 0.80 8.09 -2.39 -0.02 0.78 16 29 H 0.10 0.73 8.08 -2.38 -0.02 0.71 16 30 H 0.14 1.77 7.57 -2.91 -0.02 1.75 16 31 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 32 H 0.41 3.62 9.06 -74.06 -0.67 2.95 16 33 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.41 6.72 7.82 -92.71 -0.73 5.99 16 36 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 37 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 38 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -79.93 341.04 1.64 -78.29 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.35 Total: 14.83 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 4.13 Total: -20.51 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.70 Total: -74.16 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.30 Total: -35.91 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.05 Total: -10.20 kcal Total: -79.93 1.64 -78.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269107674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.942 kcal (2) G-P(sol) polarization free energy of solvation -79.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds