Wall clock time and date at job start Tue Mar 31 2020 07:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.47012 * 2 1 4 4 H 1.08997 * 109.47366 * 305.62859 * 3 2 1 5 5 S 1.81402 * 109.47312 * 65.62686 * 3 2 1 6 6 C 1.81397 * 103.00399 * 189.20083 * 5 3 2 7 7 C 1.50701 * 109.47096 * 185.62777 * 3 2 1 8 8 O 1.21291 * 119.99840 * 264.99852 * 7 3 2 9 9 N 1.34778 * 120.00039 * 85.00131 * 7 3 2 10 10 C 1.39928 * 119.99801 * 175.20937 * 9 7 3 11 11 C 1.38961 * 120.03151 * 215.24923 * 10 9 7 12 12 C 1.38160 * 120.06194 * 179.97438 * 11 10 9 13 13 C 1.38171 * 120.13957 * 359.74971 * 12 11 10 14 14 C 1.38906 * 120.06690 * 0.51015 * 13 12 11 15 15 O 1.35752 * 120.02798 * 179.76982 * 14 13 12 16 16 C 1.34831 * 117.00295 * 354.07257 * 15 14 13 17 17 H 1.08003 * 120.00139 * 5.04179 * 16 15 14 18 18 C 1.38657 * 120.00331 * 185.04016 * 16 15 14 19 19 N 1.31551 * 120.00256 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99538 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46985 * 90.00408 * 20 18 16 22 22 H 1.48499 * 109.46828 * 209.99978 * 20 18 16 23 23 H 1.48496 * 109.47290 * 329.99960 * 20 18 16 24 24 C 1.38712 * 120.03649 * 35.23329 * 10 9 7 25 25 H 1.09000 * 109.46909 * 184.92292 * 1 2 3 26 26 H 1.09001 * 109.46925 * 304.91997 * 1 2 3 27 27 H 1.08995 * 109.47301 * 64.92045 * 1 2 3 28 28 H 1.08999 * 109.46561 * 239.99906 * 2 1 3 29 29 H 1.08999 * 109.46919 * 120.00238 * 2 1 3 30 30 H 1.08999 * 109.47380 * 184.97848 * 6 5 3 31 31 H 1.09004 * 109.47030 * 304.98596 * 6 5 3 32 32 H 1.09000 * 109.47069 * 64.97793 * 6 5 3 33 33 H 0.96996 * 119.99875 * 355.20705 * 9 7 3 34 34 H 1.07996 * 119.97191 * 0.02562 * 11 10 9 35 35 H 1.08007 * 119.92674 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.96375 * 180.25192 * 13 12 11 37 37 H 0.96996 * 120.00386 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.06717 * 0.04414 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9845 -0.8353 5 16 1.5761 2.2478 1.5578 6 6 2.0036 3.9857 1.2620 7 6 3.5406 1.4447 -0.1393 8 8 4.2413 1.5030 0.8490 9 7 4.1039 1.3821 -1.3621 10 6 5.4927 1.4852 -1.4987 11 6 6.0370 2.1312 -2.6021 12 6 7.4081 2.2338 -2.7373 13 6 8.2421 1.6994 -1.7740 14 6 7.7042 1.0478 -0.6715 15 8 8.5245 0.5190 0.2721 16 6 9.8486 0.5516 0.0200 17 1 10.2185 1.0569 -0.8599 18 6 10.7355 -0.0635 0.8905 19 7 12.0274 -0.0313 0.6448 20 14 10.0956 -0.9381 2.4121 21 1 9.8171 -2.3597 2.0855 22 1 11.1158 -0.8683 3.4889 23 1 8.8454 -0.2815 2.8714 24 6 6.3275 0.9430 -0.5327 25 1 -0.3633 -1.0239 0.0882 26 1 -0.3633 0.5883 0.8427 27 1 -0.3633 0.4356 -0.9307 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8468 4.5591 2.1756 31 1 3.0495 4.0568 0.9633 32 1 1.3715 4.3854 0.4691 33 1 3.5466 1.2656 -2.1474 34 1 5.3876 2.5541 -3.3543 35 1 7.8288 2.7367 -3.5956 36 1 9.3135 1.7848 -1.8805 37 1 12.6479 -0.4612 1.2539 38 1 5.9068 0.4401 0.3256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269507892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:17 Heat of formation + Delta-G solvation = -56.898683 kcal Electronic energy + Delta-G solvation = -21099.890560 eV Core-core repulsion = 17840.731012 eV Total energy + Delta-G solvation = -3259.159548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70413 -40.50899 -38.38082 -35.90206 -35.41833 -34.46370 -31.44498 -30.62025 -29.87040 -28.55004 -27.23907 -24.23715 -23.27386 -22.78760 -21.61199 -19.95197 -19.51357 -18.39735 -17.80039 -16.94558 -16.83756 -16.54698 -16.30427 -15.87524 -15.70780 -15.60270 -15.34815 -14.63560 -14.45895 -14.34663 -14.29525 -14.17926 -13.80117 -13.31688 -13.13064 -13.06039 -12.91980 -12.76166 -12.53045 -12.17763 -12.08381 -11.99172 -11.53299 -11.33740 -11.04132 -10.89916 -10.78249 -9.44563 -8.97540 -8.65882 -8.53799 -6.25709 0.32756 0.49001 0.61474 1.25835 1.28458 1.33008 1.47647 1.59024 1.98805 2.24549 2.73027 2.96474 3.13512 3.51699 3.66880 3.90453 4.08362 4.22853 4.27950 4.31824 4.33784 4.35770 4.45083 4.60252 4.68019 4.77010 4.81905 4.89575 5.08345 5.15704 5.32115 5.34331 5.38397 5.43783 5.65008 5.75363 5.88039 6.18043 6.36181 6.81251 7.06928 7.57413 8.57695 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.003995 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.249209 B = 7007.352362 C = 7737.389727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.066 4.066 4 H 0.148 0.852 5 S -0.237 6.237 6 C -0.123 4.123 7 C 0.499 3.501 8 O -0.540 6.540 9 N -0.647 5.647 10 C 0.181 3.819 11 C -0.192 4.192 12 C -0.052 4.052 13 C -0.248 4.248 14 C 0.133 3.867 15 O -0.250 6.250 16 C -0.399 4.399 17 H 0.089 0.911 18 C 0.016 3.984 19 N -0.918 5.918 20 Si 0.961 3.039 21 H -0.264 1.264 22 H -0.261 1.261 23 H -0.276 1.276 24 C -0.203 4.203 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.432 0.568 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.113 0.887 37 H 0.286 0.714 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.124 4.697 -7.688 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.198 4.198 4 H 0.165 0.835 5 S -0.010 6.010 6 C -0.292 4.292 7 C 0.284 3.716 8 O -0.415 6.415 9 N -0.295 5.295 10 C 0.086 3.914 11 C -0.212 4.212 12 C -0.071 4.071 13 C -0.268 4.268 14 C 0.084 3.916 15 O -0.157 6.157 16 C -0.475 4.475 17 H 0.106 0.894 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.784 3.216 21 H -0.188 1.188 22 H -0.186 1.186 23 H -0.201 1.201 24 C -0.225 4.225 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.273 0.727 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.996 4.158 -5.750 26.947 hybrid contribution 1.188 0.135 -0.492 1.293 sum -24.808 4.293 -6.242 25.939 Atomic orbital electron populations 1.21815 0.92141 1.02975 1.03518 1.21363 0.98789 0.90054 1.03632 1.23626 0.91594 1.03712 1.00897 0.83454 1.86934 1.81065 1.07982 1.25036 1.23503 1.04136 0.93986 1.07525 1.21444 0.91789 0.75488 0.82868 1.90839 1.64341 1.47701 1.38662 1.43241 1.04573 1.71779 1.09955 1.17304 0.82771 0.96194 0.95122 1.20935 0.95291 1.05112 0.99894 1.21036 0.92855 0.95872 0.97300 1.21366 1.00955 1.06973 0.97468 1.19392 0.90405 0.93071 0.88773 1.83540 1.17879 1.72934 1.41356 1.20772 0.78374 1.36629 1.11751 0.89401 1.25147 0.94428 0.97310 1.01368 1.69700 1.01877 1.44837 1.39466 0.85360 0.78333 0.79226 0.78658 1.18834 1.18567 1.20103 1.20217 0.89898 1.08939 1.03421 0.91385 0.92077 0.90296 0.88315 0.92738 0.87093 0.92311 0.87682 0.72746 0.81509 0.82592 0.86881 0.90472 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.82 71.98 0.71 -0.86 16 2 C -0.10 -1.50 5.38 30.59 0.16 -1.33 16 3 C -0.07 -1.15 2.59 29.85 0.08 -1.08 16 4 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 5 S -0.24 -5.17 19.84 -56.49 -1.12 -6.29 16 6 C -0.12 -2.17 10.64 113.37 1.21 -0.97 16 7 C 0.50 13.21 6.59 87.66 0.58 13.78 16 8 O -0.54 -20.90 13.58 -3.07 -0.04 -20.94 16 9 N -0.65 -14.60 5.34 -303.55 -1.62 -16.22 16 10 C 0.18 5.81 6.29 38.14 0.24 6.05 16 11 C -0.19 -5.18 9.96 22.42 0.22 -4.96 16 12 C -0.05 -1.67 10.03 22.24 0.22 -1.45 16 13 C -0.25 -10.93 9.16 22.41 0.21 -10.72 16 14 C 0.13 6.69 6.64 22.56 0.15 6.84 16 15 O -0.25 -14.64 8.58 -22.77 -0.20 -14.84 16 16 C -0.40 -24.44 9.95 67.92 0.68 -23.76 16 17 H 0.09 5.50 5.43 -2.91 -0.02 5.49 16 18 C 0.02 0.98 5.49 84.83 0.47 1.45 16 19 N -0.92 -55.92 13.96 21.61 0.30 -55.62 16 20 Si 0.96 48.31 28.62 68.60 1.96 50.28 16 21 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -14.54 7.11 99.48 0.71 -13.83 16 24 C -0.20 -8.94 8.64 22.51 0.19 -8.75 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.80 7.01 -2.39 -0.02 0.78 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.31 8.05 -2.39 -0.02 1.29 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.43 5.21 8.82 -92.71 -0.82 4.39 16 34 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.11 5.41 5.63 -2.91 -0.02 5.40 16 37 H 0.29 15.94 8.31 -92.71 -0.77 15.17 16 38 H 0.11 5.37 6.23 -2.91 -0.02 5.35 16 Total: -1.00 -79.20 335.03 4.66 -74.54 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.26 Total: 14.85 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 5.11 Total: -25.75 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.32 Total: -71.84 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.24 Total: -35.78 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.96 Total: 50.28 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -1.12 Total: -6.29 kcal Total: -79.20 4.66 -74.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269507892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.644 kcal (2) G-P(sol) polarization free energy of solvation -79.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds