Wall clock time and date at job start Tue Mar 31 2020 07:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46860 * 2 1 4 4 C 1.50697 * 109.46882 * 119.99951 * 2 1 3 5 5 C 1.38282 * 119.97628 * 61.35575 * 4 2 1 6 6 C 1.38245 * 120.11253 * 179.72393 * 5 4 2 7 7 C 1.38163 * 120.05530 * 0.54434 * 6 5 4 8 8 C 1.38708 * 119.94353 * 359.72877 * 7 6 5 9 9 O 1.35902 * 120.05625 * 179.97438 * 8 7 6 10 10 C 1.38127 * 119.96836 * 241.62302 * 4 2 1 11 11 N 1.46502 * 109.47070 * 240.00096 * 2 1 3 12 12 C 1.46494 * 120.00035 * 306.43282 * 11 2 1 13 13 C 1.34779 * 119.99688 * 126.15822 * 11 2 1 14 14 O 1.21280 * 119.99951 * 0.02562 * 13 11 2 15 15 C 1.50695 * 119.99595 * 179.97438 * 13 11 2 16 16 S 1.81006 * 109.47192 * 180.02562 * 15 13 11 17 17 C 1.76190 * 100.00180 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00073 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00246 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99247 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00390 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47288 * 59.99829 * 21 19 17 23 23 H 1.48495 * 109.47526 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47103 * 300.00281 * 21 19 17 25 25 H 1.09011 * 109.46861 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47468 * 299.99696 * 1 2 3 27 27 H 1.08997 * 109.47625 * 60.00449 * 1 2 3 28 28 H 1.07997 * 119.94244 * 359.97241 * 5 4 2 29 29 H 1.08000 * 119.97352 * 180.25190 * 6 5 4 30 30 H 1.07996 * 120.03019 * 179.70677 * 7 6 5 31 31 H 0.96705 * 113.99495 * 270.01949 * 9 8 7 32 32 H 1.08001 * 120.03221 * 0.02754 * 10 4 2 33 33 H 1.09003 * 109.47194 * 273.52785 * 12 11 2 34 34 H 1.09004 * 109.47366 * 33.52191 * 12 11 2 35 35 H 1.08994 * 109.47282 * 153.52531 * 12 11 2 36 36 H 1.09007 * 109.47396 * 299.99949 * 15 13 11 37 37 H 1.08994 * 109.47616 * 60.00235 * 15 13 11 38 38 H 0.97006 * 119.99737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7212 -2.0422 1.4347 6 6 2.1852 -2.6982 2.5597 7 6 2.9519 -2.0212 3.4885 8 6 3.2606 -0.6838 3.2888 9 8 4.0142 -0.0155 4.2013 10 6 2.7984 -0.0291 2.1561 11 7 2.0183 -0.6906 -1.1962 12 6 1.5522 -2.0454 -1.5014 13 6 2.8923 -0.0773 -2.0188 14 8 3.2747 1.0461 -1.7684 15 6 3.3950 -0.7879 -3.2489 16 16 4.5459 0.2885 -4.1395 17 6 4.9638 -0.7619 -5.4909 18 1 4.5274 -1.7471 -5.5641 19 6 5.8538 -0.3232 -6.4615 20 7 6.3860 0.8773 -6.3720 21 14 6.2974 -1.4371 -7.8939 22 1 5.0695 -1.7729 -8.6586 23 1 7.2601 -0.7396 -8.7838 24 1 6.9157 -2.6847 -7.3778 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.1180 -2.5718 0.7122 29 1 1.9443 -3.7395 2.7149 30 1 3.3102 -2.5328 4.3696 31 1 3.4992 0.4116 4.8995 32 1 3.0372 1.0123 1.9985 33 1 2.1786 -2.7708 -0.9823 34 1 0.5188 -2.1568 -1.1728 35 1 1.6121 -2.2168 -2.5761 36 1 3.9080 -1.7038 -2.9553 37 1 2.5531 -1.0344 -3.8958 38 1 7.0083 1.1838 -7.0501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269571873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:40 Heat of formation + Delta-G solvation = -49.073072 kcal Electronic energy + Delta-G solvation = -20958.934975 eV Core-core repulsion = 17700.114771 eV Total energy + Delta-G solvation = -3258.820204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41883 -39.22496 -37.23260 -35.53499 -32.67990 -32.41602 -30.41585 -29.39593 -28.56771 -27.01221 -25.47955 -23.78276 -22.73068 -21.33648 -19.33740 -18.02663 -17.69093 -16.91471 -16.57790 -15.97484 -15.65332 -15.44497 -15.01526 -14.79276 -14.23310 -14.02272 -13.69860 -13.49762 -13.14245 -12.76416 -12.63359 -12.42971 -12.40902 -12.15180 -12.11824 -11.83490 -11.46151 -11.23272 -11.03162 -11.02891 -10.76452 -10.63699 -9.80706 -9.41663 -9.04684 -9.03093 -8.77244 -8.56916 -8.21561 -6.48733 -6.20146 -3.90785 1.02990 1.13278 2.92064 3.05030 3.24312 3.25751 3.29751 3.45172 3.64691 4.00671 4.21624 4.48475 4.67155 4.84920 4.92953 5.01616 5.07307 5.11030 5.14817 5.17110 5.33972 5.43584 5.46418 5.55896 5.66473 5.69815 5.75136 5.86960 5.90218 5.97237 6.13949 6.18861 6.23344 6.36723 6.61790 6.65241 7.45602 7.52120 7.60457 8.36164 8.55122 9.24846 10.87253 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.003327 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.831252 B = 8414.061714 C = 8628.687412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.175 3.825 3 H 0.110 0.890 4 C -0.074 4.074 5 C -0.120 4.120 6 C -0.106 4.106 7 C -0.147 4.147 8 C 0.104 3.896 9 O -0.498 6.498 10 C -0.129 4.129 11 N -0.615 5.615 12 C 0.072 3.928 13 C 0.535 3.465 14 O -0.515 6.515 15 C -0.149 4.149 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.388 0.612 32 H 0.131 0.869 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -7.188 18.785 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.071 3.929 3 H 0.127 0.873 4 C -0.075 4.075 5 C -0.139 4.139 6 C -0.124 4.124 7 C -0.166 4.166 8 C 0.059 3.941 9 O -0.308 6.308 10 C -0.148 4.148 11 N -0.351 5.351 12 C -0.071 4.071 13 C 0.323 3.677 14 O -0.389 6.389 15 C -0.300 4.300 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.244 0.756 32 H 0.149 0.851 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.665 -5.568 18.705 23.265 hybrid contribution -0.433 -2.014 -0.847 2.227 sum -13.098 -7.582 17.858 23.408 Atomic orbital electron populations 1.22138 0.93961 1.02506 1.02834 1.19885 0.94042 0.97506 0.81459 0.87254 1.20076 0.97291 0.94525 0.95602 1.21201 1.00774 0.94199 0.97690 1.21007 0.97556 0.99793 0.94033 1.21415 0.99795 0.94512 1.00878 1.18451 0.93715 0.90986 0.90899 1.84866 1.34935 1.70811 1.40192 1.21401 0.97625 1.01080 0.94676 1.47885 1.46318 1.16688 1.24207 1.21920 0.99551 0.83300 1.02353 1.20379 0.77410 0.86167 0.83699 1.90683 1.56155 1.18672 1.73411 1.23555 1.04523 1.04521 0.97365 1.85402 1.51866 1.20672 1.25499 1.22819 1.31921 1.03441 1.10230 0.91005 1.24988 0.95070 0.95549 0.97940 1.70014 1.28549 1.17058 1.34649 0.86224 0.78360 0.80053 0.80857 1.19941 1.20813 1.19941 0.92020 0.91290 0.91472 0.85455 0.85617 0.85606 0.75629 0.85118 0.92542 0.91169 0.90304 0.89259 0.89191 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.84 37.16 0.33 -1.12 16 2 C 0.17 2.19 2.95 -69.08 -0.20 1.98 16 3 H 0.11 1.60 6.66 -51.93 -0.35 1.26 16 4 C -0.07 -0.87 4.97 -104.65 -0.52 -1.39 16 5 C -0.12 -1.20 8.02 -39.56 -0.32 -1.52 16 6 C -0.11 -0.98 10.04 -39.61 -0.40 -1.37 16 7 C -0.15 -1.47 9.99 -39.44 -0.39 -1.86 16 8 C 0.10 1.18 6.70 -39.22 -0.26 0.92 16 9 O -0.50 -5.17 13.50 -19.43 -0.26 -5.43 16 10 C -0.13 -1.58 9.61 -39.43 -0.38 -1.96 16 11 N -0.62 -8.81 2.75 -175.27 -0.48 -9.29 16 12 C 0.07 0.76 8.27 59.84 0.49 1.25 16 13 C 0.54 10.37 7.69 -10.99 -0.08 10.29 16 14 O -0.52 -11.92 15.20 5.56 0.08 -11.84 16 15 C -0.15 -3.08 4.66 36.00 0.17 -2.91 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 21 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H 0.06 0.48 5.86 -51.92 -0.30 0.17 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.13 1.03 5.14 -52.49 -0.27 0.76 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.39 1.93 9.06 45.56 0.41 2.34 16 32 H 0.13 1.61 7.94 -52.49 -0.42 1.19 16 33 H 0.06 0.56 7.10 -51.93 -0.37 0.19 16 34 H 0.07 0.54 5.57 -51.93 -0.29 0.25 16 35 H 0.08 0.84 6.30 -51.93 -0.33 0.51 16 36 H 0.09 1.74 8.11 -51.91 -0.42 1.32 16 37 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -36.17 330.53 -7.50 -43.67 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.95 Total: 1.69 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.37 Total: -10.76 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.25 Total: -34.92 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.18 Total: -17.27 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.17 -7.50 -43.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269571873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.399 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds