Wall clock time and date at job start Tue Mar 31 2020 07:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46860 * 2 1 4 4 C 1.50697 * 109.46882 * 119.99951 * 2 1 3 5 5 C 1.38282 * 119.97628 * 61.35575 * 4 2 1 6 6 C 1.38245 * 120.11253 * 179.72393 * 5 4 2 7 7 C 1.38163 * 120.05530 * 0.54434 * 6 5 4 8 8 C 1.38708 * 119.94353 * 359.72877 * 7 6 5 9 9 O 1.35902 * 120.05625 * 179.97438 * 8 7 6 10 10 C 1.38127 * 119.96836 * 241.62302 * 4 2 1 11 11 N 1.46502 * 109.47070 * 240.00096 * 2 1 3 12 12 C 1.46494 * 120.00035 * 306.43282 * 11 2 1 13 13 C 1.34779 * 119.99688 * 126.15822 * 11 2 1 14 14 O 1.21280 * 119.99951 * 0.02562 * 13 11 2 15 15 C 1.50695 * 119.99595 * 179.97438 * 13 11 2 16 16 S 1.81006 * 109.47192 * 180.02562 * 15 13 11 17 17 C 1.76190 * 100.00180 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00073 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00246 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99247 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00390 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47288 * 59.99829 * 21 19 17 23 23 H 1.48495 * 109.47526 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47103 * 300.00281 * 21 19 17 25 25 H 1.09011 * 109.46861 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47468 * 299.99696 * 1 2 3 27 27 H 1.08997 * 109.47625 * 60.00449 * 1 2 3 28 28 H 1.07997 * 119.94244 * 359.97241 * 5 4 2 29 29 H 1.08000 * 119.97352 * 180.25190 * 6 5 4 30 30 H 1.07996 * 120.03019 * 179.70677 * 7 6 5 31 31 H 0.96705 * 113.99495 * 270.01949 * 9 8 7 32 32 H 1.08001 * 120.03221 * 0.02754 * 10 4 2 33 33 H 1.09003 * 109.47194 * 273.52785 * 12 11 2 34 34 H 1.09004 * 109.47366 * 33.52191 * 12 11 2 35 35 H 1.08994 * 109.47282 * 153.52531 * 12 11 2 36 36 H 1.09007 * 109.47396 * 299.99949 * 15 13 11 37 37 H 1.08994 * 109.47616 * 60.00235 * 15 13 11 38 38 H 0.97006 * 119.99737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7212 -2.0422 1.4347 6 6 2.1852 -2.6982 2.5597 7 6 2.9519 -2.0212 3.4885 8 6 3.2606 -0.6838 3.2888 9 8 4.0142 -0.0155 4.2013 10 6 2.7984 -0.0291 2.1561 11 7 2.0183 -0.6906 -1.1962 12 6 1.5522 -2.0454 -1.5014 13 6 2.8923 -0.0773 -2.0188 14 8 3.2747 1.0461 -1.7684 15 6 3.3950 -0.7879 -3.2489 16 16 4.5459 0.2885 -4.1395 17 6 4.9638 -0.7619 -5.4909 18 1 4.5274 -1.7471 -5.5641 19 6 5.8538 -0.3232 -6.4615 20 7 6.3860 0.8773 -6.3720 21 14 6.2974 -1.4371 -7.8939 22 1 5.0695 -1.7729 -8.6586 23 1 7.2601 -0.7396 -8.7838 24 1 6.9157 -2.6847 -7.3778 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.1180 -2.5718 0.7122 29 1 1.9443 -3.7395 2.7149 30 1 3.3102 -2.5328 4.3696 31 1 3.4992 0.4116 4.8995 32 1 3.0372 1.0123 1.9985 33 1 2.1786 -2.7708 -0.9823 34 1 0.5188 -2.1568 -1.1728 35 1 1.6121 -2.2168 -2.5761 36 1 3.9080 -1.7038 -2.9553 37 1 2.5531 -1.0344 -3.8958 38 1 7.0083 1.1838 -7.0501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269571873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:39 Heat of formation + Delta-G solvation = -74.743764 kcal Electronic energy + Delta-G solvation = -20960.048139 eV Core-core repulsion = 17700.114771 eV Total energy + Delta-G solvation = -3259.933369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45410 -40.34138 -38.22047 -36.62545 -34.58911 -33.72726 -31.34487 -30.41716 -29.77516 -27.97633 -27.66661 -24.70755 -23.52504 -22.36841 -20.59606 -19.61591 -18.92207 -18.22480 -17.45347 -17.09549 -16.87999 -16.77779 -16.54529 -16.08077 -15.74187 -15.11514 -14.69723 -14.61125 -14.46072 -14.38858 -13.60033 -13.48516 -13.35826 -13.23836 -13.15533 -12.99573 -12.87266 -12.82611 -12.60510 -12.27759 -12.10072 -11.74854 -11.44800 -11.12965 -10.92202 -10.27882 -9.88056 -9.73532 -9.57228 -8.68637 -8.34621 -6.13660 0.22783 0.32388 1.25554 1.44162 1.45862 1.54994 1.55917 2.09391 2.27460 2.70327 2.99429 3.24337 3.26142 3.60640 3.76223 3.92554 4.11913 4.17739 4.19746 4.25712 4.31098 4.33172 4.45415 4.58690 4.66948 4.72455 4.85649 4.93549 4.96478 5.01485 5.22117 5.40859 5.41131 5.43951 5.49814 5.62075 5.89626 6.19068 6.25022 6.83282 7.06114 7.11732 8.74523 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.003327 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.831252 B = 8414.061714 C = 8628.687412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.172 3.828 3 H 0.075 0.925 4 C -0.085 4.085 5 C -0.120 4.120 6 C -0.100 4.100 7 C -0.151 4.151 8 C 0.094 3.906 9 O -0.514 6.514 10 C -0.157 4.157 11 N -0.601 5.601 12 C 0.059 3.941 13 C 0.530 3.470 14 O -0.568 6.568 15 C -0.121 4.121 16 S -0.156 6.156 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.260 1.260 23 H -0.279 1.279 24 H -0.262 1.262 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.409 0.591 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 -10.893 19.204 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.069 3.931 3 H 0.093 0.907 4 C -0.086 4.086 5 C -0.138 4.138 6 C -0.117 4.117 7 C -0.169 4.169 8 C 0.049 3.951 9 O -0.327 6.327 10 C -0.176 4.176 11 N -0.334 5.334 12 C -0.082 4.082 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.272 4.272 16 S 0.071 5.929 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.184 1.184 23 H -0.204 1.204 24 H -0.186 1.186 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.170 0.830 29 H 0.177 0.823 30 H 0.163 0.837 31 H 0.268 0.732 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.530 -9.308 19.172 25.793 hybrid contribution 0.054 -0.882 -0.794 1.188 sum -14.475 -10.189 18.378 25.517 Atomic orbital electron populations 1.22094 0.90947 1.04274 1.03183 1.19985 0.96200 0.95801 0.81135 0.90707 1.20015 0.97941 0.95581 0.95046 1.21460 1.00690 0.93140 0.98505 1.21413 0.96149 1.01168 0.92999 1.21704 0.99589 0.93776 1.01843 1.18613 0.93801 0.91855 0.90807 1.84800 1.35939 1.71157 1.40839 1.21450 0.99250 1.00766 0.96111 1.47885 1.44201 1.17871 1.23449 1.22302 1.01953 0.80989 1.02971 1.20224 0.78264 0.85656 0.84054 1.90667 1.58457 1.20870 1.74621 1.23365 1.03283 1.03027 0.97527 1.85622 1.55023 1.24745 1.27500 1.23164 1.32227 1.03727 1.10301 0.89799 1.26155 0.94684 0.97152 1.01166 1.70190 1.29378 1.19350 1.35936 0.84984 0.78481 0.77798 0.76614 1.18440 1.20439 1.18648 0.89394 0.89970 0.92177 0.82988 0.82307 0.83715 0.73212 0.86973 0.91102 0.87432 0.90129 0.87717 0.86992 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.84 71.98 0.64 -1.78 16 2 C 0.17 4.24 2.95 44.24 0.13 4.37 16 3 H 0.07 2.37 6.66 -2.39 -0.02 2.35 16 4 C -0.08 -1.91 4.97 -19.88 -0.10 -2.01 16 5 C -0.12 -1.99 8.02 22.28 0.18 -1.81 16 6 C -0.10 -1.46 10.04 22.25 0.22 -1.23 16 7 C -0.15 -2.64 9.99 22.36 0.22 -2.41 16 8 C 0.09 2.08 6.70 22.51 0.15 2.23 16 9 O -0.51 -10.62 13.50 -92.44 -1.25 -11.87 16 10 C -0.16 -3.96 9.61 22.37 0.21 -3.74 16 11 N -0.60 -16.48 2.75 -826.82 -2.28 -18.76 16 12 C 0.06 1.03 8.27 127.77 1.06 2.09 16 13 C 0.53 20.85 7.69 87.66 0.67 21.52 16 14 O -0.57 -27.80 15.20 -3.03 -0.05 -27.85 16 15 C -0.12 -4.97 4.66 71.23 0.33 -4.64 16 16 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 17 C -0.55 -31.59 9.50 67.96 0.65 -30.94 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.83 13.22 21.65 0.29 -56.55 16 21 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 H 0.09 0.98 5.86 -2.38 -0.01 0.96 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.15 1.68 5.14 -2.91 -0.01 1.67 16 29 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.41 3.96 9.06 -74.05 -0.67 3.29 16 32 H 0.11 3.10 7.94 -2.91 -0.02 3.07 16 33 H 0.07 1.10 7.10 -2.39 -0.02 1.08 16 34 H 0.11 1.10 5.57 -2.39 -0.01 1.09 16 35 H 0.08 1.42 6.30 -2.39 -0.02 1.41 16 36 H 0.10 3.95 8.11 -2.39 -0.02 3.94 16 37 H 0.11 4.07 7.40 -2.40 -0.02 4.06 16 38 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -83.00 330.53 2.84 -80.17 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.42 Total: 16.22 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.83 Total: -17.15 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.99 Total: -75.31 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.29 Total: -39.71 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -83.00 2.84 -80.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269571873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.423 kcal (2) G-P(sol) polarization free energy of solvation -83.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds