Wall clock time and date at job start Tue Mar 31 2020 06:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 H 1.08999 * 109.47470 * 56.02044 * 3 2 1 5 5 C 1.50699 * 109.47344 * 176.01974 * 3 2 1 6 6 H 1.08003 * 119.99774 * 119.99714 * 5 3 2 7 7 C 1.37875 * 120.00170 * 300.00179 * 5 3 2 8 8 N 1.31513 * 120.00073 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47161 * 59.99901 * 9 7 5 11 11 H 1.48506 * 109.46926 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46980 * 299.99726 * 9 7 5 13 13 N 1.46503 * 109.46842 * 296.02182 * 3 2 1 14 14 C 1.39673 * 119.99541 * 159.28275 * 13 3 2 15 15 C 1.38930 * 120.08074 * 354.19292 * 14 13 3 16 16 C 1.38081 * 119.92954 * 179.69560 * 15 14 13 17 17 C 1.38314 * 120.06883 * 0.57707 * 16 15 14 18 18 N 1.48026 * 119.91942 * 179.70038 * 17 16 15 19 19 O 1.21804 * 119.99718 * 180.02562 * 18 17 16 20 20 O 1.21796 * 120.00466 * 0.02562 * 18 17 16 21 21 C 1.38260 * 120.15298 * 359.71415 * 17 16 15 22 22 C 1.38125 * 120.07478 * 359.97438 * 21 17 16 23 23 N 1.48014 * 120.03904 * 179.97438 * 22 21 17 24 24 O 1.21802 * 120.00264 * 5.90603 * 23 22 21 25 25 O 1.21806 * 120.00084 * 185.91039 * 23 22 21 26 26 H 1.08994 * 109.47098 * 175.12853 * 1 2 3 27 27 H 1.09000 * 109.46986 * 295.13611 * 1 2 3 28 28 H 1.08999 * 109.46406 * 55.13005 * 1 2 3 29 29 H 1.09007 * 109.46854 * 120.00034 * 2 1 3 30 30 H 1.08997 * 109.47230 * 239.99855 * 2 1 3 31 31 H 0.96993 * 120.00170 * 179.97438 * 8 7 5 32 32 H 0.96994 * 119.99898 * 339.28554 * 13 3 2 33 33 H 1.08001 * 120.03607 * 359.97438 * 15 14 13 34 34 H 1.08002 * 119.96920 * 180.26927 * 16 15 14 35 35 H 1.07999 * 119.96042 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6198 1.9765 0.8521 5 6 3.5438 1.4436 0.0986 6 1 4.1360 1.8927 -0.6850 7 6 4.1636 0.8711 1.1891 8 7 3.4425 0.3246 2.1435 9 14 6.0277 0.8719 1.3109 10 1 6.5232 2.2718 1.3105 11 1 6.4417 0.2011 2.5695 12 1 6.5999 0.1439 0.1500 13 7 1.6316 2.1048 -1.2412 14 6 1.5859 3.4993 -1.3062 15 6 1.8098 4.2574 -0.1637 16 6 1.7702 5.6359 -0.2329 17 6 1.4961 6.2618 -1.4354 18 7 1.4478 7.7397 -1.5043 19 8 1.2061 8.2924 -2.5625 20 8 1.6498 8.4031 -0.5030 21 6 1.2668 5.5104 -2.5731 22 6 1.3113 4.1312 -2.5123 23 7 1.0651 3.3275 -3.7306 24 8 0.9299 3.8800 -4.8077 25 8 0.9977 2.1136 -3.6561 26 1 -0.3633 -1.0239 -0.0873 27 1 -0.3633 0.4365 0.9303 28 1 -0.3632 0.5876 -0.8432 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.8785 -0.0785 2.9104 32 1 1.3928 1.5750 -2.0178 33 1 2.0192 3.7691 0.7766 34 1 1.9485 6.2259 0.6540 35 1 1.0526 6.0024 -3.5103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273880259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:27 Heat of formation + Delta-G solvation = 16.651205 kcal Electronic energy + Delta-G solvation = -23898.928356 eV Core-core repulsion = 20096.664956 eV Total energy + Delta-G solvation = -3802.263400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31807 -41.93012 -39.65141 -37.12838 -36.43783 -36.28745 -33.59060 -32.16569 -31.91192 -30.03941 -27.43632 -26.69310 -25.51503 -23.69947 -22.86801 -22.12536 -20.30065 -19.94462 -18.86269 -18.35194 -17.70475 -17.58220 -17.47745 -17.35489 -16.96563 -15.99842 -14.92769 -14.60525 -14.25505 -13.80084 -13.64121 -13.22582 -12.88807 -12.42493 -12.17818 -11.69581 -11.62301 -11.47132 -11.42387 -11.16282 -11.15381 -11.06832 -11.04543 -10.92168 -10.90118 -10.45699 -10.38877 -10.13454 -9.90025 -9.54706 -8.83674 -7.82237 -6.48995 -4.62970 -0.08274 0.04683 1.23321 1.28737 1.49837 1.70437 3.05007 3.10697 3.11701 3.16624 3.39720 4.06264 4.17033 4.41962 4.52824 4.65251 4.80353 5.07735 5.29797 5.59915 5.70562 5.77818 5.83979 6.02135 6.08975 6.33223 6.40483 6.44792 6.50169 6.60382 6.82014 7.21931 7.25603 7.48630 7.62764 7.71834 7.77491 7.91655 8.41265 9.07240 10.53249 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.005484 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.027462 B = 5104.318689 C = 6187.018418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.251 3.749 4 H 0.053 0.947 5 C -0.544 4.544 6 H 0.062 0.938 7 C 0.074 3.926 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.648 5.648 14 C 0.331 3.669 15 C -0.170 4.170 16 C 0.016 3.984 17 C -0.126 4.126 18 N 0.049 4.951 19 O -0.180 6.180 20 O -0.172 6.172 21 C 0.063 3.937 22 C -0.153 4.153 23 N 0.060 4.940 24 O -0.163 6.163 25 O -0.196 6.196 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.270 0.730 32 H 0.416 0.584 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 4.550 -2.713 6.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.150 3.850 4 H 0.071 0.929 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.131 4.131 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.200 1.200 13 N -0.271 5.271 14 C 0.201 3.799 15 C -0.193 4.193 16 C -0.006 4.006 17 C -0.215 4.215 18 N 0.563 4.437 19 O -0.391 6.391 20 O -0.385 6.385 21 C 0.043 3.957 22 C -0.246 4.246 23 N 0.568 4.432 24 O -0.378 6.378 25 O -0.395 6.395 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.264 0.736 33 H 0.194 0.806 34 H 0.179 0.821 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.224 3.736 -1.800 5.920 hybrid contribution 0.904 -0.111 -0.555 1.067 sum -3.320 3.626 -2.355 5.451 Atomic orbital electron populations 1.21880 0.98354 1.00307 1.00473 1.21902 0.92491 0.98164 1.04303 1.19411 0.95304 0.90313 0.79951 0.92899 1.21302 0.89894 1.40080 1.06961 0.91960 1.24877 0.99123 0.94113 0.95000 1.69800 1.35854 1.36579 1.09537 0.86469 0.84140 0.78711 0.77781 1.19909 1.20792 1.19957 1.47454 1.58371 1.01662 1.19577 1.17974 0.84754 0.86769 0.90371 1.21007 1.07650 0.91660 0.99014 1.20982 0.88905 0.94561 0.96175 1.20271 1.24622 0.79589 0.96989 1.43272 0.97129 1.03087 1.00170 1.94527 1.52667 1.73449 1.18485 1.94517 1.53485 1.64161 1.26315 1.20214 0.86052 0.90406 0.99068 1.20035 1.28719 0.90739 0.85061 1.43154 0.97150 1.00827 1.02044 1.94522 1.53823 1.74021 1.15442 1.94216 1.57262 0.96364 1.91611 0.93721 0.93316 0.94326 0.86701 0.93471 0.91948 0.73646 0.80624 0.82089 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.85 37.16 0.37 -2.11 16 2 C -0.13 -2.50 5.28 -26.73 -0.14 -2.64 16 3 C 0.25 4.95 1.70 -69.08 -0.12 4.83 16 4 H 0.05 1.08 6.50 -51.93 -0.34 0.74 16 5 C -0.54 -12.28 8.63 -34.44 -0.30 -12.58 16 6 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 7 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.88 -20.86 11.30 55.43 0.63 -20.23 16 9 Si 0.90 18.72 29.54 -169.99 -5.02 13.70 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 N -0.65 -11.37 4.52 -53.29 -0.24 -11.62 16 14 C 0.33 5.34 6.56 -83.78 -0.55 4.79 16 15 C -0.17 -2.49 9.15 -39.38 -0.36 -2.85 16 16 C 0.02 0.20 9.55 -39.61 -0.38 -0.17 16 17 C -0.13 -1.79 6.85 -79.91 -0.55 -2.34 16 18 N 0.05 0.75 4.45 33.98 0.15 0.90 16 19 O -0.18 -2.85 18.44 -29.46 -0.54 -3.40 16 20 O -0.17 -2.68 18.44 -29.46 -0.54 -3.22 16 21 C 0.06 0.89 9.06 -39.61 -0.36 0.53 16 22 C -0.15 -2.38 6.86 -79.75 -0.55 -2.92 16 23 N 0.06 1.00 4.45 34.06 0.15 1.15 16 24 O -0.16 -2.69 18.46 -29.46 -0.54 -3.24 16 25 O -0.20 -3.41 15.71 -29.46 -0.46 -3.87 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.60 7.49 -51.93 -0.39 0.21 16 29 H 0.12 2.49 5.98 -51.93 -0.31 2.18 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 32 H 0.42 7.26 4.88 -41.20 -0.20 7.06 16 33 H 0.18 2.65 6.21 -52.49 -0.33 2.33 16 34 H 0.16 1.76 7.60 -52.49 -0.40 1.36 16 35 H 0.17 2.18 7.17 -52.49 -0.38 1.80 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -23.55 311.79 -7.90 -31.45 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.15 Total: 7.52 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -3.03 Total: -13.86 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.69 Total: -29.80 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -2.09 Total: -13.73 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -23.55 -7.90 -31.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273880259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.103 kcal (2) G-P(sol) polarization free energy of solvation -23.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds