Wall clock time and date at job start Tue Mar 31 2020 06:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 H 1.08999 * 109.47470 * 56.02044 * 3 2 1 5 5 C 1.50699 * 109.47344 * 176.01974 * 3 2 1 6 6 H 1.08003 * 119.99774 * 119.99714 * 5 3 2 7 7 C 1.37875 * 120.00170 * 300.00179 * 5 3 2 8 8 N 1.31513 * 120.00073 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47161 * 59.99901 * 9 7 5 11 11 H 1.48506 * 109.46926 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46980 * 299.99726 * 9 7 5 13 13 N 1.46503 * 109.46842 * 296.02182 * 3 2 1 14 14 C 1.39673 * 119.99541 * 159.28275 * 13 3 2 15 15 C 1.38930 * 120.08074 * 354.19292 * 14 13 3 16 16 C 1.38081 * 119.92954 * 179.69560 * 15 14 13 17 17 C 1.38314 * 120.06883 * 0.57707 * 16 15 14 18 18 N 1.48026 * 119.91942 * 179.70038 * 17 16 15 19 19 O 1.21804 * 119.99718 * 180.02562 * 18 17 16 20 20 O 1.21796 * 120.00466 * 0.02562 * 18 17 16 21 21 C 1.38260 * 120.15298 * 359.71415 * 17 16 15 22 22 C 1.38125 * 120.07478 * 359.97438 * 21 17 16 23 23 N 1.48014 * 120.03904 * 179.97438 * 22 21 17 24 24 O 1.21802 * 120.00264 * 5.90603 * 23 22 21 25 25 O 1.21806 * 120.00084 * 185.91039 * 23 22 21 26 26 H 1.08994 * 109.47098 * 175.12853 * 1 2 3 27 27 H 1.09000 * 109.46986 * 295.13611 * 1 2 3 28 28 H 1.08999 * 109.46406 * 55.13005 * 1 2 3 29 29 H 1.09007 * 109.46854 * 120.00034 * 2 1 3 30 30 H 1.08997 * 109.47230 * 239.99855 * 2 1 3 31 31 H 0.96993 * 120.00170 * 179.97438 * 8 7 5 32 32 H 0.96994 * 119.99898 * 339.28554 * 13 3 2 33 33 H 1.08001 * 120.03607 * 359.97438 * 15 14 13 34 34 H 1.08002 * 119.96920 * 180.26927 * 16 15 14 35 35 H 1.07999 * 119.96042 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6198 1.9765 0.8521 5 6 3.5438 1.4436 0.0986 6 1 4.1360 1.8927 -0.6850 7 6 4.1636 0.8711 1.1891 8 7 3.4425 0.3246 2.1435 9 14 6.0277 0.8719 1.3109 10 1 6.5232 2.2718 1.3105 11 1 6.4417 0.2011 2.5695 12 1 6.5999 0.1439 0.1500 13 7 1.6316 2.1048 -1.2412 14 6 1.5859 3.4993 -1.3062 15 6 1.8098 4.2574 -0.1637 16 6 1.7702 5.6359 -0.2329 17 6 1.4961 6.2618 -1.4354 18 7 1.4478 7.7397 -1.5043 19 8 1.2061 8.2924 -2.5625 20 8 1.6498 8.4031 -0.5030 21 6 1.2668 5.5104 -2.5731 22 6 1.3113 4.1312 -2.5123 23 7 1.0651 3.3275 -3.7306 24 8 0.9299 3.8800 -4.8077 25 8 0.9977 2.1136 -3.6561 26 1 -0.3633 -1.0239 -0.0873 27 1 -0.3633 0.4365 0.9303 28 1 -0.3632 0.5876 -0.8432 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.8785 -0.0785 2.9104 32 1 1.3928 1.5750 -2.0178 33 1 2.0192 3.7691 0.7766 34 1 1.9485 6.2259 0.6540 35 1 1.0526 6.0024 -3.5103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273880259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:27 Heat of formation + Delta-G solvation = 7.600770 kcal Electronic energy + Delta-G solvation = -23899.320812 eV Core-core repulsion = 20096.664956 eV Total energy + Delta-G solvation = -3802.655856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.59287 -43.16490 -40.90789 -38.48106 -37.67291 -37.64730 -35.07970 -33.62409 -33.22043 -31.32398 -28.98855 -27.95913 -26.82252 -25.18833 -24.17098 -23.37985 -21.75474 -21.19380 -20.13848 -19.60149 -18.99785 -18.88349 -18.69697 -18.62439 -18.57141 -17.42259 -16.47658 -15.84913 -15.62493 -15.21024 -14.87545 -14.66193 -14.19120 -13.74548 -13.47310 -13.28837 -13.12995 -12.83990 -12.71490 -12.68443 -12.50238 -12.40555 -12.32946 -12.27739 -12.25087 -12.06345 -11.86570 -11.65507 -11.17149 -10.99625 -10.57397 -9.18571 -8.23087 -6.41513 -1.33006 -1.17796 -0.01507 0.04572 0.26880 0.47381 1.38366 1.43158 1.47313 1.92584 2.07613 2.36816 2.95080 3.03764 3.26703 3.33574 3.47455 3.85848 4.14287 4.34609 4.44019 4.47463 4.57655 4.62837 4.85263 4.91618 5.06225 5.08217 5.23324 5.25892 5.39057 5.55081 5.69228 5.89795 6.06329 6.28428 6.52705 6.54574 6.65573 7.30003 8.76335 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.005484 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.027462 B = 5104.318689 C = 6187.018418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.261 3.739 4 H 0.047 0.953 5 C -0.550 4.550 6 H 0.048 0.952 7 C 0.040 3.960 8 N -0.898 5.898 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.658 5.658 14 C 0.323 3.677 15 C -0.175 4.175 16 C 0.037 3.963 17 C -0.123 4.123 18 N 0.049 4.951 19 O -0.189 6.189 20 O -0.169 6.169 21 C 0.072 3.928 22 C -0.153 4.153 23 N 0.059 4.941 24 O -0.154 6.154 25 O -0.218 6.218 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.269 0.731 32 H 0.415 0.585 33 H 0.172 0.828 34 H 0.188 0.812 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 5.744 -2.767 7.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.159 3.841 4 H 0.065 0.935 5 C -0.588 4.588 6 H 0.066 0.934 7 C -0.163 4.163 8 N -0.535 5.535 9 Si 0.772 3.228 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.283 5.283 14 C 0.196 3.804 15 C -0.198 4.198 16 C 0.015 3.985 17 C -0.211 4.211 18 N 0.563 4.437 19 O -0.399 6.399 20 O -0.384 6.384 21 C 0.051 3.949 22 C -0.246 4.246 23 N 0.566 4.434 24 O -0.373 6.373 25 O -0.412 6.412 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.263 0.737 33 H 0.189 0.811 34 H 0.205 0.795 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.473 4.921 -1.863 6.906 hybrid contribution 0.972 -0.327 -0.584 1.180 sum -3.502 4.594 -2.447 6.273 Atomic orbital electron populations 1.21767 0.95959 1.01476 1.00809 1.21759 0.94620 0.97490 1.02680 1.19098 0.93637 0.90701 0.80681 0.93547 1.21482 0.91610 1.39454 1.06289 0.93369 1.25365 1.01588 0.94239 0.95084 1.69879 1.36611 1.37244 1.09806 0.85791 0.81230 0.78397 0.77332 1.19860 1.20608 1.20632 1.47177 1.60076 1.02251 1.18796 1.18185 0.84796 0.86343 0.91075 1.20971 1.08312 0.92157 0.98386 1.21204 0.86583 0.93959 0.96729 1.20331 1.24299 0.79135 0.97296 1.43359 0.96988 1.03320 1.00081 1.94537 1.53096 1.73675 1.18568 1.94519 1.53229 1.64382 1.26244 1.20327 0.85084 0.89700 0.99780 1.20051 1.29072 0.91061 0.84412 1.43288 0.96995 1.00830 1.02318 1.94504 1.53144 1.73884 1.15749 1.94224 1.58413 0.96771 1.91756 0.92197 0.93178 0.93647 0.89142 0.94168 0.92094 0.73719 0.81073 0.79480 0.79788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.85 71.98 0.71 -3.79 16 2 C -0.13 -4.89 5.28 30.59 0.16 -4.73 16 3 C 0.26 10.29 1.70 44.24 0.08 10.37 16 4 H 0.05 1.90 6.50 -2.39 -0.02 1.88 16 5 C -0.55 -24.94 8.63 25.60 0.22 -24.72 16 6 H 0.05 2.28 7.81 -2.91 -0.02 2.26 16 7 C 0.04 1.84 5.29 84.65 0.45 2.29 16 8 N -0.90 -42.72 11.30 21.45 0.24 -42.47 16 9 Si 0.95 38.27 29.54 68.60 2.03 40.30 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 13 N -0.66 -22.96 4.52 -322.50 -1.46 -24.41 16 14 C 0.32 10.10 6.56 38.22 0.25 10.35 16 15 C -0.18 -4.86 9.15 22.40 0.20 -4.66 16 16 C 0.04 0.86 9.55 22.25 0.21 1.08 16 17 C -0.12 -3.14 6.85 36.40 0.25 -2.89 16 18 N 0.05 1.36 4.45 -46.40 -0.21 1.16 16 19 O -0.19 -5.55 18.44 18.88 0.35 -5.21 16 20 O -0.17 -4.80 18.44 18.89 0.35 -4.46 16 21 C 0.07 1.85 9.06 22.25 0.20 2.06 16 22 C -0.15 -4.54 6.86 36.51 0.25 -4.29 16 23 N 0.06 1.90 4.45 -46.15 -0.21 1.69 16 24 O -0.15 -4.86 18.46 18.88 0.35 -4.51 16 25 O -0.22 -7.51 15.71 18.88 0.30 -7.21 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.36 7.49 -2.39 -0.02 1.34 16 29 H 0.09 3.97 5.98 -2.38 -0.01 3.96 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16 32 H 0.41 14.49 4.88 -98.64 -0.48 14.01 16 33 H 0.17 5.02 6.21 -2.91 -0.02 5.00 16 34 H 0.19 3.44 7.60 -2.91 -0.02 3.42 16 35 H 0.18 4.25 7.17 -2.91 -0.02 4.23 16 Total: -1.00 -48.57 311.79 5.40 -43.17 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.68 Total: 20.90 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 2.98 Total: -18.94 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -1.63 Total: -64.04 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 1.34 Total: -21.38 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -48.57 5.40 -43.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273880259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.769 kcal (2) G-P(sol) polarization free energy of solvation -48.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds