Wall clock time and date at job start Tue Mar 31 2020 07:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47119 * 2 1 4 4 O 1.42899 * 109.47117 * 119.99974 * 2 1 3 5 5 C 1.50697 * 109.47314 * 240.00415 * 2 1 3 6 6 O 1.21300 * 120.00147 * 245.00264 * 5 2 1 7 7 N 1.34778 * 120.00292 * 64.99943 * 5 2 1 8 8 C 1.40143 * 119.99984 * 185.67584 * 7 5 2 9 9 C 1.38650 * 120.10087 * 19.60782 * 8 7 5 10 10 C 1.38243 * 120.00873 * 179.72036 * 9 8 7 11 11 C 1.38298 * 120.21084 * 0.27400 * 10 9 8 12 12 C 1.38200 * 120.20007 * 0.02562 * 11 10 9 13 13 C 1.38785 * 119.98606 * 0.02562 * 12 11 10 14 14 S 1.76197 * 120.10307 * 180.02562 * 13 12 11 15 15 C 1.81398 * 103.00040 * 354.79457 * 14 13 12 16 16 H 1.09000 * 109.47532 * 51.76717 * 15 14 13 17 17 C 1.53001 * 109.47435 * 291.77001 * 15 14 13 18 18 C 1.50700 * 109.47233 * 171.76675 * 15 14 13 19 19 H 1.07994 * 120.00221 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00159 * 179.97438 * 18 15 14 21 21 N 1.31520 * 119.99827 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00367 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46845 * 90.00055 * 22 20 18 24 24 H 1.48497 * 109.47651 * 210.00400 * 22 20 18 25 25 H 1.48502 * 109.46967 * 330.00758 * 22 20 18 26 26 H 1.08995 * 109.47450 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47236 * 300.00052 * 1 2 3 28 28 H 1.09002 * 109.47052 * 59.99528 * 1 2 3 29 29 H 0.96697 * 113.99636 * 60.00565 * 4 2 1 30 30 H 0.97000 * 119.99672 * 5.67361 * 7 5 2 31 31 H 1.08000 * 119.99092 * 359.97438 * 9 8 7 32 32 H 1.08004 * 119.89859 * 180.25260 * 10 9 8 33 33 H 1.07997 * 119.90181 * 179.97438 * 11 10 9 34 34 H 1.08003 * 120.00730 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.47091 * 63.59219 * 17 15 14 36 36 H 1.08993 * 109.47680 * 183.59714 * 17 15 14 37 37 H 1.09007 * 109.46471 * 303.59820 * 17 15 14 38 38 H 0.96996 * 119.99652 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7103 -1.2305 6 8 2.6530 -1.7467 -1.1216 7 7 1.7919 -0.1940 -2.4520 8 6 2.1537 -0.9121 -3.5998 9 6 2.3726 -2.2792 -3.5246 10 6 2.7238 -2.9867 -4.6592 11 6 2.8634 -2.3343 -5.8706 12 6 2.6533 -0.9709 -5.9543 13 6 2.3016 -0.2524 -4.8202 14 16 2.0323 1.4858 -4.9235 15 6 2.4848 1.8676 -6.6382 16 1 1.9495 1.1993 -7.3127 17 6 3.9918 1.6780 -6.8224 18 6 2.1164 3.2955 -6.9489 19 1 1.6566 3.9118 -6.1906 20 6 2.3675 3.8154 -8.2010 21 7 2.9280 3.0651 -9.1243 22 14 1.9103 5.5851 -8.5864 23 1 3.0543 6.4741 -8.2604 24 1 1.5827 5.7088 -10.0295 25 1 0.7304 5.9794 -7.7754 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7210 -1.5952 1.2328 30 1 1.3685 0.6746 -2.5367 31 1 2.2648 -2.7920 -2.5802 32 1 2.8899 -4.0522 -4.5993 33 1 3.1383 -2.8918 -6.7537 34 1 2.7629 -0.4647 -6.9020 35 1 4.2488 0.6313 -6.6599 36 1 4.2736 1.9685 -7.8344 37 1 4.5265 2.2992 -6.1038 38 1 3.1042 3.4308 -10.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276564033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:50 Heat of formation + Delta-G solvation = -64.379982 kcal Electronic energy + Delta-G solvation = -21185.486321 eV Core-core repulsion = 17926.002360 eV Total energy + Delta-G solvation = -3259.483961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70447 -38.50058 -36.71811 -34.88768 -34.18781 -31.50830 -31.14879 -29.96770 -29.06500 -25.43804 -24.88681 -22.89430 -22.33442 -21.31445 -20.41575 -18.48456 -17.59636 -16.97182 -16.27322 -16.07487 -15.78226 -15.24129 -14.79131 -14.55867 -14.39413 -14.01919 -13.66855 -13.40935 -13.04405 -12.77449 -12.57344 -12.43884 -12.15908 -11.88864 -11.77272 -11.35797 -11.12031 -11.07629 -10.97939 -10.69846 -10.58021 -10.38361 -10.10154 -9.56484 -9.42688 -9.18036 -9.01112 -8.57522 -8.01479 -6.62345 -6.28145 -4.38093 1.43924 1.67582 2.35549 2.50689 2.97193 3.17837 3.24753 3.28120 3.53891 3.97119 4.08748 4.24070 4.43730 4.60805 4.73653 5.03988 5.23170 5.29554 5.32929 5.42443 5.56022 5.69774 5.76438 5.80213 6.17513 6.41045 6.49410 6.55165 6.67195 6.68286 6.74522 6.84590 7.17944 7.23539 7.28357 7.42439 7.54064 7.70355 7.94666 7.97447 8.60743 9.26593 10.77574 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.004244 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.061598 B = 6596.575721 C = 7782.521313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.091 3.909 3 H 0.129 0.871 4 O -0.538 6.538 5 C 0.482 3.518 6 O -0.518 6.518 7 N -0.653 5.653 8 C 0.146 3.854 9 C -0.127 4.127 10 C -0.122 4.122 11 C -0.120 4.120 12 C -0.114 4.114 13 C -0.093 4.093 14 S -0.180 6.180 15 C 0.103 3.897 16 H 0.052 0.948 17 C -0.147 4.147 18 C -0.512 4.512 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.885 5.885 22 Si 0.907 3.093 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.271 1.271 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.383 0.617 30 H 0.415 0.585 31 H 0.150 0.850 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.022 0.978 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -7.800 12.034 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.029 3.971 3 H 0.146 0.854 4 O -0.343 6.343 5 C 0.269 3.731 6 O -0.395 6.395 7 N -0.298 5.298 8 C 0.046 3.954 9 C -0.148 4.148 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.138 4.138 13 C -0.208 4.208 14 S 0.067 5.933 15 C -0.024 4.024 16 H 0.070 0.930 17 C -0.206 4.206 18 C -0.551 4.551 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.523 5.523 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.196 1.196 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.232 0.768 30 H 0.252 0.748 31 H 0.167 0.833 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.041 0.959 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.801 -7.025 12.933 15.201 hybrid contribution -0.161 -0.024 -1.604 1.612 sum -3.962 -7.050 11.329 13.919 Atomic orbital electron populations 1.22468 0.93625 1.03699 1.04250 1.21824 0.94655 0.97529 0.83139 0.85385 1.86609 1.77556 1.29852 1.40257 1.21809 0.79646 0.86331 0.85265 1.90624 1.38839 1.23821 1.86177 1.43580 1.59415 1.22496 1.04270 1.17298 1.02395 0.91023 0.84702 1.21425 1.01376 0.91737 1.00271 1.20962 1.01535 0.99500 0.92372 1.21048 1.01107 0.94230 0.97720 1.21332 1.00160 0.94397 0.97925 1.21720 1.05110 0.99094 0.94888 1.84933 1.83056 0.98319 1.26949 1.21085 0.96492 1.00677 0.84136 0.93008 1.22171 0.96258 0.97626 1.04552 1.20610 1.41767 0.94654 0.98090 0.91489 1.24891 0.94461 0.98422 0.95543 1.69855 1.41710 1.36311 1.04385 0.86340 0.79045 0.83571 0.77655 1.20323 1.20907 1.19587 0.91550 0.90157 0.90530 0.76800 0.74773 0.83300 0.86201 0.86178 0.84290 0.95907 0.88466 0.94188 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.49 37.16 0.35 -0.98 16 2 C 0.09 0.89 4.00 -27.89 -0.11 0.78 16 3 H 0.13 1.11 8.14 -51.92 -0.42 0.69 16 4 O -0.54 -5.73 12.99 -55.09 -0.72 -6.45 16 5 C 0.48 6.44 7.01 -10.99 -0.08 6.36 16 6 O -0.52 -8.37 13.23 -14.32 -0.19 -8.56 16 7 N -0.65 -9.33 5.20 -9.71 -0.05 -9.38 16 8 C 0.15 2.50 6.51 -83.43 -0.54 1.96 16 9 C -0.13 -2.05 8.79 -39.43 -0.35 -2.40 16 10 C -0.12 -1.82 10.04 -39.56 -0.40 -2.21 16 11 C -0.12 -1.89 10.04 -39.57 -0.40 -2.29 16 12 C -0.11 -2.08 8.01 -39.39 -0.32 -2.40 16 13 C -0.09 -1.74 6.05 -38.90 -0.24 -1.98 16 14 S -0.18 -3.65 19.88 -107.50 -2.14 -5.78 16 15 C 0.10 2.46 1.98 -27.88 -0.06 2.40 16 16 H 0.05 1.31 7.00 -51.92 -0.36 0.95 16 17 C -0.15 -3.39 8.58 37.16 0.32 -3.07 16 18 C -0.51 -13.26 8.58 -34.44 -0.30 -13.55 16 19 H 0.07 1.74 7.71 -52.49 -0.40 1.33 16 20 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 21 N -0.89 -23.53 11.30 55.43 0.63 -22.90 16 22 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16 29 H 0.38 3.07 8.79 45.56 0.40 3.47 16 30 H 0.41 5.38 7.50 -40.82 -0.31 5.08 16 31 H 0.15 2.38 5.42 -52.49 -0.28 2.10 16 32 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.14 2.72 4.77 -52.48 -0.25 2.47 16 35 H 0.02 0.47 5.74 -51.93 -0.30 0.18 16 36 H 0.10 2.44 5.98 -51.93 -0.31 2.13 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -29.44 325.86 -8.69 -38.12 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -3.91 Total: 10.57 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.20 Total: -15.63 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.58 Total: -32.29 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.91 Total: -15.01 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.14 Total: -5.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.44 -8.69 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276564033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.256 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds