Wall clock time and date at job start Tue Mar 31 2020 07:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47119 * 2 1 4 4 O 1.42899 * 109.47117 * 119.99974 * 2 1 3 5 5 C 1.50697 * 109.47314 * 240.00415 * 2 1 3 6 6 O 1.21300 * 120.00147 * 245.00264 * 5 2 1 7 7 N 1.34778 * 120.00292 * 64.99943 * 5 2 1 8 8 C 1.40143 * 119.99984 * 185.67584 * 7 5 2 9 9 C 1.38650 * 120.10087 * 19.60782 * 8 7 5 10 10 C 1.38243 * 120.00873 * 179.72036 * 9 8 7 11 11 C 1.38298 * 120.21084 * 0.27400 * 10 9 8 12 12 C 1.38200 * 120.20007 * 0.02562 * 11 10 9 13 13 C 1.38785 * 119.98606 * 0.02562 * 12 11 10 14 14 S 1.76197 * 120.10307 * 180.02562 * 13 12 11 15 15 C 1.81398 * 103.00040 * 354.79457 * 14 13 12 16 16 H 1.09000 * 109.47532 * 51.76717 * 15 14 13 17 17 C 1.53001 * 109.47435 * 291.77001 * 15 14 13 18 18 C 1.50700 * 109.47233 * 171.76675 * 15 14 13 19 19 H 1.07994 * 120.00221 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00159 * 179.97438 * 18 15 14 21 21 N 1.31520 * 119.99827 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00367 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46845 * 90.00055 * 22 20 18 24 24 H 1.48497 * 109.47651 * 210.00400 * 22 20 18 25 25 H 1.48502 * 109.46967 * 330.00758 * 22 20 18 26 26 H 1.08995 * 109.47450 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47236 * 300.00052 * 1 2 3 28 28 H 1.09002 * 109.47052 * 59.99528 * 1 2 3 29 29 H 0.96697 * 113.99636 * 60.00565 * 4 2 1 30 30 H 0.97000 * 119.99672 * 5.67361 * 7 5 2 31 31 H 1.08000 * 119.99092 * 359.97438 * 9 8 7 32 32 H 1.08004 * 119.89859 * 180.25260 * 10 9 8 33 33 H 1.07997 * 119.90181 * 179.97438 * 11 10 9 34 34 H 1.08003 * 120.00730 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.47091 * 63.59219 * 17 15 14 36 36 H 1.08993 * 109.47680 * 183.59714 * 17 15 14 37 37 H 1.09007 * 109.46471 * 303.59820 * 17 15 14 38 38 H 0.96996 * 119.99652 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7103 -1.2305 6 8 2.6530 -1.7467 -1.1216 7 7 1.7919 -0.1940 -2.4520 8 6 2.1537 -0.9121 -3.5998 9 6 2.3726 -2.2792 -3.5246 10 6 2.7238 -2.9867 -4.6592 11 6 2.8634 -2.3343 -5.8706 12 6 2.6533 -0.9709 -5.9543 13 6 2.3016 -0.2524 -4.8202 14 16 2.0323 1.4858 -4.9235 15 6 2.4848 1.8676 -6.6382 16 1 1.9495 1.1993 -7.3127 17 6 3.9918 1.6780 -6.8224 18 6 2.1164 3.2955 -6.9489 19 1 1.6566 3.9118 -6.1906 20 6 2.3675 3.8154 -8.2010 21 7 2.9280 3.0651 -9.1243 22 14 1.9103 5.5851 -8.5864 23 1 3.0543 6.4741 -8.2604 24 1 1.5827 5.7088 -10.0295 25 1 0.7304 5.9794 -7.7754 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7210 -1.5952 1.2328 30 1 1.3685 0.6746 -2.5367 31 1 2.2648 -2.7920 -2.5802 32 1 2.8899 -4.0522 -4.5993 33 1 3.1383 -2.8918 -6.7537 34 1 2.7629 -0.4647 -6.9020 35 1 4.2488 0.6313 -6.6599 36 1 4.2736 1.9685 -7.8344 37 1 4.5265 2.2992 -6.1038 38 1 3.1042 3.4308 -10.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276564033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:49 Heat of formation + Delta-G solvation = -82.399152 kcal Electronic energy + Delta-G solvation = -21186.267691 eV Core-core repulsion = 17926.002360 eV Total energy + Delta-G solvation = -3260.265331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82697 -39.68818 -37.63701 -36.31498 -35.85504 -32.86433 -32.31665 -31.56371 -30.19196 -27.39959 -25.77412 -24.17520 -23.71102 -23.00000 -21.50782 -19.67764 -18.85779 -18.26588 -17.97207 -17.16116 -16.96230 -16.76149 -16.04084 -15.76974 -15.56289 -15.33204 -15.05607 -14.89688 -14.47079 -14.12102 -13.80872 -13.47925 -13.30404 -13.14234 -12.98936 -12.87697 -12.85406 -12.54416 -12.47551 -12.24877 -11.85834 -11.78010 -11.59211 -11.36891 -10.83438 -10.65116 -10.55169 -10.43539 -9.30558 -8.24896 -8.15366 -6.41605 0.17207 0.34067 0.81475 1.41559 1.42419 1.43760 1.54091 1.77881 1.94457 2.38272 2.78721 3.05348 3.20675 3.50634 3.90236 3.91900 4.06744 4.15170 4.37007 4.47821 4.50177 4.57980 4.73313 4.79729 4.81181 4.85358 4.88906 5.13964 5.16463 5.28041 5.31507 5.42717 5.55517 5.57269 5.73988 6.00611 6.01594 6.22877 6.57720 6.61081 6.89200 7.26315 8.80778 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.004244 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.061598 B = 6596.575721 C = 7782.521313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 H 0.142 0.858 4 O -0.550 6.550 5 C 0.482 3.518 6 O -0.547 6.547 7 N -0.652 5.652 8 C 0.145 3.855 9 C -0.136 4.136 10 C -0.108 4.108 11 C -0.121 4.121 12 C -0.129 4.129 13 C -0.118 4.118 14 S -0.169 6.169 15 C 0.098 3.902 16 H 0.027 0.973 17 C -0.132 4.132 18 C -0.531 4.531 19 H 0.062 0.938 20 C 0.028 3.972 21 N -0.909 5.909 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.393 0.607 30 H 0.420 0.580 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -8.320 13.317 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.036 3.964 3 H 0.159 0.841 4 O -0.357 6.357 5 C 0.271 3.729 6 O -0.425 6.425 7 N -0.297 5.297 8 C 0.044 3.956 9 C -0.157 4.157 10 C -0.129 4.129 11 C -0.141 4.141 12 C -0.154 4.154 13 C -0.233 4.233 14 S 0.078 5.922 15 C -0.030 4.030 16 H 0.045 0.955 17 C -0.191 4.191 18 C -0.570 4.570 19 H 0.080 0.920 20 C -0.174 4.174 21 N -0.547 5.547 22 Si 0.792 3.208 23 H -0.199 1.199 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.244 0.756 30 H 0.258 0.742 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.137 0.863 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.342 -7.560 14.238 16.695 hybrid contribution 0.011 -0.024 -1.928 1.928 sum -4.331 -7.584 12.311 15.094 Atomic orbital electron populations 1.22444 0.91430 1.04258 1.05239 1.21938 0.96160 0.97333 0.80937 0.84098 1.86588 1.78026 1.30834 1.40239 1.22570 0.78649 0.85959 0.85687 1.90598 1.40110 1.25232 1.86541 1.43657 1.59370 1.22627 1.04038 1.17473 1.01666 0.91623 0.84879 1.21651 1.01543 0.91444 1.01059 1.21383 0.99035 1.01166 0.91304 1.21326 1.00376 0.93158 0.99240 1.21318 1.01220 0.95779 0.97052 1.21716 1.07594 0.97940 0.96067 1.84579 1.83771 1.00332 1.23557 1.20833 0.96347 0.99357 0.86418 0.95500 1.21980 0.95998 0.98239 1.02895 1.20880 1.42055 0.95730 0.98380 0.92009 1.25669 0.94269 1.02125 0.95380 1.69965 1.42265 1.37842 1.04651 0.85401 0.78855 0.79044 0.77497 1.19861 1.20450 1.19132 0.91255 0.88507 0.90160 0.75619 0.74180 0.82821 0.82638 0.83527 0.86283 0.94553 0.90691 0.94711 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.49 71.98 0.68 -1.47 16 2 C 0.10 1.74 4.00 29.85 0.12 1.85 16 3 H 0.14 2.13 8.14 -2.38 -0.02 2.11 16 4 O -0.55 -10.69 12.99 -129.99 -1.69 -12.38 16 5 C 0.48 12.20 7.01 87.66 0.61 12.82 16 6 O -0.55 -16.95 13.23 15.89 0.21 -16.74 16 7 N -0.65 -17.97 5.20 -303.00 -1.57 -19.54 16 8 C 0.14 4.81 6.51 38.22 0.25 5.06 16 9 C -0.14 -4.16 8.79 22.37 0.20 -3.96 16 10 C -0.11 -2.92 10.04 22.29 0.22 -2.70 16 11 C -0.12 -3.57 10.04 22.27 0.22 -3.35 16 12 C -0.13 -4.74 8.01 22.39 0.18 -4.56 16 13 C -0.12 -4.43 6.05 22.71 0.14 -4.29 16 14 S -0.17 -6.92 19.88 -56.49 -1.12 -8.04 16 15 C 0.10 4.82 1.98 29.85 0.06 4.88 16 16 H 0.03 1.43 7.00 -2.39 -0.02 1.42 16 17 C -0.13 -6.26 8.58 71.98 0.62 -5.64 16 18 C -0.53 -28.08 8.58 25.60 0.22 -27.86 16 19 H 0.06 3.25 7.71 -2.91 -0.02 3.23 16 20 C 0.03 1.44 5.30 84.65 0.45 1.89 16 21 N -0.91 -49.32 11.30 21.45 0.24 -49.08 16 22 Si 0.97 41.38 29.54 68.60 2.03 43.40 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 29 H 0.39 5.64 8.79 -74.06 -0.65 4.99 16 30 H 0.42 10.51 7.50 -92.71 -0.69 9.81 16 31 H 0.15 4.63 5.42 -2.91 -0.02 4.62 16 32 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.12 4.81 4.77 -2.91 -0.01 4.80 16 35 H 0.04 1.57 5.74 -2.39 -0.01 1.56 16 36 H 0.07 3.89 5.98 -2.39 -0.01 3.88 16 37 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.27 13.78 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -63.46 325.86 1.83 -61.64 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.24 Total: 28.09 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.97 Total: -27.34 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.33 Total: -68.63 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -1.48 Total: -29.12 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: -6.92 SS G_CDS: -1.12 Total: -8.04 kcal Total: -63.46 1.83 -61.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276564033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.763 kcal (2) G-P(sol) polarization free energy of solvation -63.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds