Wall clock time and date at job start Tue Mar 31 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47025 * 2 1 4 4 O 1.42897 * 109.47399 * 239.98788 * 2 1 3 5 5 C 1.50706 * 109.46943 * 119.99349 * 2 1 3 6 6 O 1.21298 * 120.00341 * 115.00050 * 5 2 1 7 7 N 1.34780 * 119.99818 * 295.00258 * 5 2 1 8 8 C 1.40143 * 119.99735 * 185.00878 * 7 5 2 9 9 C 1.38645 * 120.09768 * 20.89567 * 8 7 5 10 10 C 1.38260 * 120.00427 * 179.71969 * 9 8 7 11 11 C 1.38294 * 120.20974 * 0.27214 * 10 9 8 12 12 C 1.38194 * 120.20279 * 0.02562 * 11 10 9 13 13 C 1.38789 * 119.98750 * 359.97438 * 12 11 10 14 14 S 1.76204 * 120.10474 * 180.02562 * 13 12 11 15 15 C 1.81401 * 102.99981 * 355.76078 * 14 13 12 16 16 H 1.08998 * 109.47299 * 53.84713 * 15 14 13 17 17 C 1.52998 * 109.47241 * 173.84237 * 15 14 13 18 18 C 1.50701 * 109.46962 * 293.84764 * 15 14 13 19 19 H 1.07996 * 119.99947 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99669 * 179.97438 * 18 15 14 21 21 N 1.31512 * 120.00152 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99770 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47154 * 60.00256 * 22 20 18 24 24 H 1.48502 * 109.46815 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47089 * 299.99946 * 22 20 18 26 26 H 1.08990 * 109.47585 * 300.00372 * 1 2 3 27 27 H 1.08997 * 109.46824 * 60.01359 * 1 2 3 28 28 H 1.09003 * 109.46598 * 180.02562 * 1 2 3 29 29 H 0.96700 * 114.00586 * 300.00305 * 4 2 1 30 30 H 0.97005 * 120.00020 * 5.01510 * 7 5 2 31 31 H 1.08000 * 120.00243 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.89061 * 180.24876 * 10 9 8 33 33 H 1.08000 * 119.89691 * 180.02562 * 11 10 9 34 34 H 1.07999 * 120.01113 * 179.97438 * 12 11 10 35 35 H 1.09005 * 109.46564 * 65.97081 * 17 15 14 36 36 H 1.08999 * 109.47606 * 185.96750 * 17 15 14 37 37 H 1.08995 * 109.47246 * 305.97515 * 17 15 14 38 38 H 0.97001 * 120.00145 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6739 -1.1666 5 6 2.0323 -0.7103 1.2306 6 8 2.6530 -1.7467 1.1218 7 7 1.7918 -0.1939 2.4521 8 6 2.3472 -0.7961 3.5892 9 6 3.4560 -1.6196 3.4683 10 6 4.0059 -2.2081 4.5921 11 6 3.4500 -1.9828 5.8382 12 6 2.3411 -1.1684 5.9678 13 6 1.7823 -0.5734 4.8453 14 16 0.3688 0.4661 5.0071 15 6 -0.0361 0.3327 6.7703 16 1 0.8447 0.5752 7.3647 17 6 -1.1647 1.3084 7.1096 18 6 -0.4787 -1.0744 7.0790 19 1 -0.5125 -1.8145 6.2932 20 6 -0.8394 -1.4171 8.3649 21 7 -0.7977 -0.5160 9.3218 22 14 -1.3887 -3.1611 8.7474 23 1 -0.2938 -4.1085 8.4174 24 1 -1.7200 -3.2702 10.1909 25 1 -2.5893 -3.4906 7.9381 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5136 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 1.7211 -1.5954 -1.2326 30 1 1.2342 0.5945 2.5442 31 1 3.8927 -1.7982 2.4969 32 1 4.8720 -2.8461 4.4964 33 1 3.8839 -2.4447 6.7127 34 1 1.9092 -0.9949 6.9424 35 1 -2.0761 1.0026 6.5958 36 1 -1.3361 1.3057 8.1860 37 1 -0.8860 2.3121 6.7886 38 1 -1.0511 -0.7572 10.2266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276564035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:52 Heat of formation + Delta-G solvation = -66.533837 kcal Electronic energy + Delta-G solvation = -21420.566504 eV Core-core repulsion = 18160.989145 eV Total energy + Delta-G solvation = -3259.577359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60914 -38.36072 -36.64147 -34.79221 -34.15934 -31.42681 -30.68214 -30.23498 -28.91279 -25.45603 -24.81526 -22.73281 -22.35837 -21.20196 -20.28090 -18.32700 -17.19679 -16.78888 -16.50870 -16.03625 -15.72330 -15.20940 -14.77004 -14.50003 -14.23760 -13.87982 -13.47542 -13.34379 -13.02744 -12.88407 -12.50262 -12.34427 -11.98446 -11.84496 -11.63077 -11.39910 -11.02957 -11.00355 -10.85704 -10.60340 -10.45066 -10.40713 -10.11158 -9.47637 -9.40327 -9.10210 -9.01583 -8.56707 -7.86924 -6.61679 -6.19980 -4.34565 1.57123 1.87321 2.47315 2.59669 3.04998 3.21319 3.25559 3.29068 3.54190 4.00939 4.26300 4.27395 4.50263 4.66716 4.77313 5.05959 5.33524 5.45159 5.49406 5.51383 5.71358 5.79861 5.89901 5.99355 6.36684 6.49639 6.58944 6.63159 6.68987 6.77079 6.89139 7.04976 7.22293 7.23632 7.45148 7.49951 7.51451 7.71996 7.92773 8.05504 8.66413 9.30698 10.79168 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.004718 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.646417 B = 5933.357689 C = 6518.907080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.093 3.907 3 H 0.127 0.873 4 O -0.540 6.540 5 C 0.481 3.519 6 O -0.518 6.518 7 N -0.653 5.653 8 C 0.143 3.857 9 C -0.131 4.131 10 C -0.121 4.121 11 C -0.125 4.125 12 C -0.092 4.092 13 C -0.080 4.080 14 S -0.202 6.202 15 C 0.101 3.899 16 H 0.052 0.948 17 C -0.124 4.124 18 C -0.521 4.521 19 H 0.066 0.934 20 C 0.072 3.928 21 N -0.886 5.886 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.385 0.615 30 H 0.413 0.587 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.153 0.847 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.020 0.980 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 2.280 -12.171 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.030 3.970 3 H 0.145 0.855 4 O -0.345 6.345 5 C 0.268 3.732 6 O -0.394 6.394 7 N -0.298 5.298 8 C 0.042 3.958 9 C -0.152 4.152 10 C -0.142 4.142 11 C -0.146 4.146 12 C -0.116 4.116 13 C -0.195 4.195 14 S 0.043 5.957 15 C -0.026 4.026 16 H 0.070 0.930 17 C -0.184 4.184 18 C -0.560 4.560 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.524 5.524 22 Si 0.724 3.276 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.234 0.766 30 H 0.250 0.750 31 H 0.164 0.836 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.170 0.830 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.039 0.961 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.897 2.914 -13.041 13.920 hybrid contribution -0.311 -1.872 1.578 2.468 sum 3.586 1.042 -11.464 12.057 Atomic orbital electron populations 1.22487 0.93609 1.03960 1.04188 1.21819 0.94793 0.97213 0.83191 0.85544 1.86576 1.77567 1.30001 1.40348 1.21791 0.80323 0.85787 0.85310 1.90638 1.39713 1.22867 1.86220 1.43556 1.50170 1.31184 1.04856 1.17321 0.94901 0.99049 0.84489 1.21330 0.94990 0.98550 1.00351 1.20966 1.00266 1.00697 0.92312 1.21079 0.96852 0.99414 0.97255 1.21555 0.95030 0.95929 0.99078 1.21361 0.99764 1.04074 0.94289 1.84364 1.31640 1.55930 1.23724 1.21091 0.98684 0.99517 0.83343 0.93031 1.21641 0.97463 0.94757 1.04539 1.21189 1.46284 0.93708 0.94829 0.91553 1.24939 0.94753 0.97653 0.95910 1.69851 1.47349 1.33569 1.01598 0.86543 0.79507 0.84258 0.77253 1.19912 1.21077 1.20012 0.90420 0.90263 0.91403 0.76642 0.75014 0.83560 0.86414 0.86324 0.82957 0.94103 0.88318 0.96098 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.48 37.16 0.35 -1.19 16 2 C 0.09 0.94 4.00 -27.88 -0.11 0.82 16 3 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 4 O -0.54 -5.92 12.99 -55.09 -0.72 -6.64 16 5 C 0.48 6.70 7.01 -10.98 -0.08 6.62 16 6 O -0.52 -8.78 13.27 -14.32 -0.19 -8.97 16 7 N -0.65 -9.67 5.19 -9.70 -0.05 -9.72 16 8 C 0.14 2.57 6.50 -83.43 -0.54 2.03 16 9 C -0.13 -2.29 8.77 -39.42 -0.35 -2.64 16 10 C -0.12 -1.99 10.04 -39.55 -0.40 -2.38 16 11 C -0.13 -2.20 10.04 -39.58 -0.40 -2.60 16 12 C -0.09 -1.85 8.75 -39.39 -0.34 -2.20 16 13 C -0.08 -1.57 6.05 -38.90 -0.24 -1.81 16 14 S -0.20 -4.02 19.92 -107.50 -2.14 -6.16 16 15 C 0.10 2.33 2.02 -27.88 -0.06 2.28 16 16 H 0.05 1.27 7.18 -51.92 -0.37 0.90 16 17 C -0.12 -2.75 8.89 37.16 0.33 -2.42 16 18 C -0.52 -13.16 6.60 -34.44 -0.23 -13.39 16 19 H 0.07 1.75 7.71 -52.49 -0.40 1.35 16 20 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 21 N -0.89 -23.18 11.39 55.43 0.63 -22.55 16 22 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H 0.08 0.64 7.77 -51.93 -0.40 0.23 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.38 3.38 8.79 45.56 0.40 3.78 16 30 H 0.41 5.40 7.16 -40.82 -0.29 5.11 16 31 H 0.15 2.56 5.49 -52.49 -0.29 2.27 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 34 H 0.15 3.38 5.00 -52.49 -0.26 3.12 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.10 2.37 6.25 -51.93 -0.32 2.05 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -28.74 327.55 -8.74 -37.49 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.04 Total: 11.43 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.15 Total: -15.14 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.58 Total: -32.27 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.91 Total: -15.60 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.14 Total: -6.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.74 -8.74 -37.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276564035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.049 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds