Wall clock time and date at job start Tue Mar 31 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47025 * 2 1 4 4 O 1.42897 * 109.47399 * 239.98788 * 2 1 3 5 5 C 1.50706 * 109.46943 * 119.99349 * 2 1 3 6 6 O 1.21298 * 120.00341 * 115.00050 * 5 2 1 7 7 N 1.34780 * 119.99818 * 295.00258 * 5 2 1 8 8 C 1.40143 * 119.99735 * 185.00878 * 7 5 2 9 9 C 1.38645 * 120.09768 * 20.89567 * 8 7 5 10 10 C 1.38260 * 120.00427 * 179.71969 * 9 8 7 11 11 C 1.38294 * 120.20974 * 0.27214 * 10 9 8 12 12 C 1.38194 * 120.20279 * 0.02562 * 11 10 9 13 13 C 1.38789 * 119.98750 * 359.97438 * 12 11 10 14 14 S 1.76204 * 120.10474 * 180.02562 * 13 12 11 15 15 C 1.81401 * 102.99981 * 355.76078 * 14 13 12 16 16 H 1.08998 * 109.47299 * 53.84713 * 15 14 13 17 17 C 1.52998 * 109.47241 * 173.84237 * 15 14 13 18 18 C 1.50701 * 109.46962 * 293.84764 * 15 14 13 19 19 H 1.07996 * 119.99947 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99669 * 179.97438 * 18 15 14 21 21 N 1.31512 * 120.00152 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99770 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47154 * 60.00256 * 22 20 18 24 24 H 1.48502 * 109.46815 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47089 * 299.99946 * 22 20 18 26 26 H 1.08990 * 109.47585 * 300.00372 * 1 2 3 27 27 H 1.08997 * 109.46824 * 60.01359 * 1 2 3 28 28 H 1.09003 * 109.46598 * 180.02562 * 1 2 3 29 29 H 0.96700 * 114.00586 * 300.00305 * 4 2 1 30 30 H 0.97005 * 120.00020 * 5.01510 * 7 5 2 31 31 H 1.08000 * 120.00243 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.89061 * 180.24876 * 10 9 8 33 33 H 1.08000 * 119.89691 * 180.02562 * 11 10 9 34 34 H 1.07999 * 120.01113 * 179.97438 * 12 11 10 35 35 H 1.09005 * 109.46564 * 65.97081 * 17 15 14 36 36 H 1.08999 * 109.47606 * 185.96750 * 17 15 14 37 37 H 1.08995 * 109.47246 * 305.97515 * 17 15 14 38 38 H 0.97001 * 120.00145 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6739 -1.1666 5 6 2.0323 -0.7103 1.2306 6 8 2.6530 -1.7467 1.1218 7 7 1.7918 -0.1939 2.4521 8 6 2.3472 -0.7961 3.5892 9 6 3.4560 -1.6196 3.4683 10 6 4.0059 -2.2081 4.5921 11 6 3.4500 -1.9828 5.8382 12 6 2.3411 -1.1684 5.9678 13 6 1.7823 -0.5734 4.8453 14 16 0.3688 0.4661 5.0071 15 6 -0.0361 0.3327 6.7703 16 1 0.8447 0.5752 7.3647 17 6 -1.1647 1.3084 7.1096 18 6 -0.4787 -1.0744 7.0790 19 1 -0.5125 -1.8145 6.2932 20 6 -0.8394 -1.4171 8.3649 21 7 -0.7977 -0.5160 9.3218 22 14 -1.3887 -3.1611 8.7474 23 1 -0.2938 -4.1085 8.4174 24 1 -1.7200 -3.2702 10.1909 25 1 -2.5893 -3.4906 7.9381 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5136 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 1.7211 -1.5954 -1.2326 30 1 1.2342 0.5945 2.5442 31 1 3.8927 -1.7982 2.4969 32 1 4.8720 -2.8461 4.4964 33 1 3.8839 -2.4447 6.7127 34 1 1.9092 -0.9949 6.9424 35 1 -2.0761 1.0026 6.5958 36 1 -1.3361 1.3057 8.1860 37 1 -0.8860 2.3121 6.7886 38 1 -1.0511 -0.7572 10.2266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276564035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:52 Heat of formation + Delta-G solvation = -83.750638 kcal Electronic energy + Delta-G solvation = -21421.313081 eV Core-core repulsion = 18160.989145 eV Total energy + Delta-G solvation = -3260.323936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78791 -39.62750 -37.60774 -36.26714 -35.82626 -32.49898 -32.27969 -31.81346 -30.13259 -27.36635 -25.77677 -24.11682 -23.84364 -22.75874 -21.46416 -19.47858 -18.52999 -18.42635 -18.03951 -17.12920 -17.00480 -16.70061 -16.02859 -15.84063 -15.44394 -15.28371 -14.99152 -14.92389 -14.56828 -14.10716 -13.52683 -13.46201 -13.39994 -13.17842 -12.92458 -12.86396 -12.79912 -12.53505 -12.37873 -12.27743 -11.86942 -11.77051 -11.50329 -11.31337 -10.90678 -10.63764 -10.53090 -10.40034 -9.25528 -8.31945 -7.99013 -6.34735 0.21065 0.42781 0.92035 1.39162 1.40671 1.44332 1.47255 1.77728 1.96270 2.38365 2.84435 3.08545 3.21745 3.52054 3.92302 4.01209 4.07685 4.19417 4.41311 4.54899 4.56375 4.65845 4.74113 4.81151 4.83663 4.88693 4.99590 5.17592 5.22724 5.33331 5.36962 5.49401 5.60798 5.63667 5.76749 6.03206 6.06652 6.25535 6.56049 6.66508 6.92553 7.31854 8.82897 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.004718 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.646417 B = 5933.357689 C = 6518.907080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.102 3.898 3 H 0.150 0.850 4 O -0.550 6.550 5 C 0.480 3.520 6 O -0.549 6.549 7 N -0.650 5.650 8 C 0.143 3.857 9 C -0.139 4.139 10 C -0.109 4.109 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.107 4.107 14 S -0.170 6.170 15 C 0.092 3.908 16 H 0.028 0.972 17 C -0.114 4.114 18 C -0.524 4.524 19 H 0.050 0.950 20 C 0.034 3.966 21 N -0.907 5.907 22 Si 0.947 3.053 23 H -0.275 1.275 24 H -0.279 1.279 25 H -0.274 1.274 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.392 0.608 30 H 0.420 0.580 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 2.083 -13.813 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.040 3.960 3 H 0.168 0.832 4 O -0.356 6.356 5 C 0.269 3.731 6 O -0.427 6.427 7 N -0.296 5.296 8 C 0.042 3.958 9 C -0.161 4.161 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.136 4.136 13 C -0.222 4.222 14 S 0.075 5.925 15 C -0.036 4.036 16 H 0.046 0.954 17 C -0.174 4.174 18 C -0.562 4.562 19 H 0.069 0.931 20 C -0.168 4.168 21 N -0.545 5.545 22 Si 0.773 3.227 23 H -0.201 1.201 24 H -0.205 1.205 25 H -0.200 1.200 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.259 0.741 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.202 2.725 -14.703 15.533 hybrid contribution -0.313 -1.839 1.996 2.732 sum 3.889 0.887 -12.707 13.318 Atomic orbital electron populations 1.22477 0.92011 1.03957 1.05316 1.21953 0.95815 0.97441 0.80792 0.83232 1.86563 1.77946 1.30803 1.40313 1.22631 0.79295 0.85373 0.85806 1.90614 1.41105 1.24378 1.86608 1.43619 1.50167 1.31314 1.04465 1.17459 0.94809 0.98747 0.84798 1.21540 0.94980 0.98635 1.00918 1.21335 1.00532 0.99822 0.91270 1.21300 0.96125 0.98905 0.98713 1.21433 0.96478 0.97568 0.98083 1.21464 1.00334 1.05281 0.95134 1.83951 1.32094 1.56294 1.20150 1.20905 0.97970 0.98702 0.86008 0.95359 1.21480 0.96996 0.95758 1.03155 1.21222 1.46060 0.94453 0.94509 0.93143 1.25520 0.94991 1.00413 0.95906 1.69940 1.48022 1.34763 1.01739 0.85766 0.78879 0.80843 0.77214 1.20061 1.20457 1.19978 0.90157 0.88250 0.92009 0.75721 0.74114 0.83218 0.83012 0.84312 0.85750 0.94370 0.90437 0.93898 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 9.48 71.98 0.68 -1.85 16 2 C 0.10 1.81 4.00 29.85 0.12 1.93 16 3 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 4 O -0.55 -10.82 12.99 -129.99 -1.69 -12.51 16 5 C 0.48 12.55 7.01 87.66 0.61 13.17 16 6 O -0.55 -17.86 13.27 15.90 0.21 -17.65 16 7 N -0.65 -18.35 5.19 -302.99 -1.57 -19.92 16 8 C 0.14 5.02 6.50 38.22 0.25 5.27 16 9 C -0.14 -4.68 8.77 22.37 0.20 -4.48 16 10 C -0.11 -3.35 10.04 22.29 0.22 -3.12 16 11 C -0.13 -4.44 10.04 22.27 0.22 -4.22 16 12 C -0.11 -4.55 8.75 22.39 0.20 -4.36 16 13 C -0.11 -4.23 6.05 22.71 0.14 -4.09 16 14 S -0.17 -6.73 19.92 -56.49 -1.13 -7.86 16 15 C 0.09 4.34 2.02 29.85 0.06 4.40 16 16 H 0.03 1.46 7.18 -2.39 -0.02 1.44 16 17 C -0.11 -5.10 8.89 71.98 0.64 -4.46 16 18 C -0.52 -26.95 6.60 25.60 0.17 -26.78 16 19 H 0.05 2.71 7.71 -2.91 -0.02 2.69 16 20 C 0.03 1.75 5.30 84.66 0.45 2.20 16 21 N -0.91 -48.24 11.39 21.45 0.24 -47.99 16 22 Si 0.95 41.95 29.54 68.60 2.03 43.97 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H 0.08 1.11 7.77 -2.39 -0.02 1.09 16 27 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.39 6.21 8.79 -74.06 -0.65 5.56 16 30 H 0.42 10.32 7.16 -92.70 -0.66 9.66 16 31 H 0.15 5.00 5.49 -2.91 -0.02 4.98 16 32 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.12 5.77 5.00 -2.91 -0.01 5.75 16 35 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.08 3.79 6.25 -2.39 -0.01 3.78 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -61.68 327.55 1.84 -59.84 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.21 Total: 28.51 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 3.96 Total: -26.40 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.33 Total: -67.91 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.48 Total: -30.15 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.13 Total: -7.86 kcal Total: -61.68 1.84 -59.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276564035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.909 kcal (2) G-P(sol) polarization free energy of solvation -61.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds