Wall clock time and date at job start Tue Mar 31 2020 07:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47293 * 2 1 4 4 O 1.42913 * 109.46998 * 119.99683 * 2 1 3 5 5 C 1.50701 * 109.47502 * 239.99492 * 2 1 3 6 6 O 1.21300 * 120.00129 * 245.00069 * 5 2 1 7 7 N 1.34776 * 119.99705 * 65.27404 * 5 2 1 8 8 C 1.40137 * 119.99882 * 175.48123 * 7 5 2 9 9 C 1.38650 * 120.09768 * 34.54038 * 8 7 5 10 10 C 1.38256 * 120.00680 * 179.69885 * 9 8 7 11 11 C 1.38302 * 120.21021 * 0.59240 * 10 9 8 12 12 C 1.38197 * 120.19773 * 359.68473 * 11 10 9 13 13 C 1.38791 * 119.99163 * 0.02562 * 12 11 10 14 14 S 1.76195 * 120.10564 * 179.97438 * 13 12 11 15 15 C 1.81404 * 103.00237 * 4.49436 * 14 13 12 16 16 H 1.08997 * 109.46655 * 49.61535 * 15 14 13 17 17 C 1.52993 * 109.47047 * 169.61698 * 15 14 13 18 18 C 1.50698 * 109.46940 * 289.61636 * 15 14 13 19 19 H 1.08000 * 119.99752 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99821 * 179.97438 * 18 15 14 21 21 N 1.31510 * 119.99878 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99620 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47533 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47112 * 120.00470 * 22 20 18 25 25 H 1.48502 * 109.46810 * 239.99616 * 22 20 18 26 26 H 1.08999 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47775 * 300.00302 * 1 2 3 28 28 H 1.08997 * 109.47301 * 60.00400 * 1 2 3 29 29 H 0.96700 * 113.99692 * 60.00253 * 4 2 1 30 30 H 0.97004 * 119.99898 * 355.48859 * 7 5 2 31 31 H 1.08001 * 119.99708 * 359.97368 * 9 8 7 32 32 H 1.07993 * 119.89389 * 180.32086 * 10 9 8 33 33 H 1.07996 * 119.90378 * 179.70189 * 11 10 9 34 34 H 1.08002 * 120.00476 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.46823 * 185.14087 * 17 15 14 36 36 H 1.09007 * 109.47028 * 305.13698 * 17 15 14 37 37 H 1.08997 * 109.47238 * 65.14175 * 17 15 14 38 38 H 0.97002 * 119.99446 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0324 -0.7105 -1.2304 6 8 2.6531 -1.7469 -1.1213 7 7 1.7967 -0.1915 -2.4517 8 6 2.3439 -0.8001 -3.5891 9 6 2.4831 -2.1786 -3.6411 10 6 3.0175 -2.7776 -4.7668 11 6 3.4260 -2.0051 -5.8387 12 6 3.2966 -0.6299 -5.7938 13 6 2.7557 -0.0203 -4.6703 14 16 2.5899 1.7327 -4.6095 15 6 3.1225 2.2507 -6.2644 16 1 2.6015 1.6576 -7.0160 17 6 2.7942 3.7314 -6.4657 18 6 4.6087 2.0425 -6.4018 19 1 5.1760 1.6386 -5.5763 20 6 5.2441 2.3668 -7.5818 21 7 4.5532 2.8581 -8.5871 22 14 7.0862 2.1080 -7.7522 23 1 7.6266 1.5479 -6.4875 24 1 7.3523 1.1629 -8.8664 25 1 7.7442 3.4082 -8.0383 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.7209 -1.5952 1.2330 30 1 1.2484 0.6035 -2.5432 31 1 2.1700 -2.7849 -2.8040 32 1 3.1203 -3.8519 -4.8074 33 1 3.8472 -2.4778 -6.7136 34 1 3.6170 -0.0296 -6.6324 35 1 3.0301 4.0199 -7.4900 36 1 1.7336 3.8973 -6.2766 37 1 3.3849 4.3318 -5.7739 38 1 5.0002 3.0859 -9.4173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276564036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:54 Heat of formation + Delta-G solvation = -69.895979 kcal Electronic energy + Delta-G solvation = -21358.980513 eV Core-core repulsion = 18099.257360 eV Total energy + Delta-G solvation = -3259.723153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53015 -38.37780 -36.62198 -34.75621 -34.15572 -31.43425 -30.69564 -30.23930 -28.92891 -25.46357 -24.81981 -22.68964 -22.35756 -21.18985 -20.23221 -18.35429 -17.28599 -16.72652 -16.49576 -16.01428 -15.74013 -15.19622 -14.69658 -14.50753 -14.31899 -13.85413 -13.48264 -13.36356 -13.01709 -12.82821 -12.53303 -12.39288 -11.98187 -11.83579 -11.62792 -11.34469 -11.04208 -11.01475 -10.89292 -10.57162 -10.44222 -10.34342 -10.00381 -9.52120 -9.45669 -9.08755 -8.99010 -8.57807 -7.95191 -6.62331 -6.20486 -4.34651 1.58701 1.85360 2.47667 2.57114 3.09252 3.18236 3.27480 3.32717 3.56520 4.02520 4.21440 4.27625 4.51202 4.65020 4.79249 5.05293 5.27819 5.40921 5.46244 5.50073 5.68671 5.71282 5.90282 6.00384 6.36744 6.50396 6.60588 6.64127 6.68372 6.73732 6.89539 7.03357 7.22839 7.24437 7.43204 7.49122 7.51807 7.73073 7.93573 8.09620 8.67657 9.30648 10.78811 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.004559 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.786805 B = 6140.771045 C = 6705.367579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.092 3.908 3 H 0.129 0.871 4 O -0.538 6.538 5 C 0.483 3.517 6 O -0.521 6.521 7 N -0.656 5.656 8 C 0.137 3.863 9 C -0.113 4.113 10 C -0.125 4.125 11 C -0.120 4.120 12 C -0.102 4.102 13 C -0.075 4.075 14 S -0.193 6.193 15 C 0.096 3.904 16 H 0.052 0.948 17 C -0.125 4.125 18 C -0.521 4.521 19 H 0.069 0.931 20 C 0.071 3.929 21 N -0.885 5.885 22 Si 0.896 3.104 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.383 0.617 30 H 0.411 0.589 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.099 0.901 36 H 0.020 0.980 37 H 0.039 0.961 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 -5.627 10.244 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.029 3.971 3 H 0.146 0.854 4 O -0.343 6.343 5 C 0.270 3.730 6 O -0.396 6.396 7 N -0.303 5.303 8 C 0.037 3.963 9 C -0.135 4.135 10 C -0.147 4.147 11 C -0.140 4.140 12 C -0.125 4.125 13 C -0.190 4.190 14 S 0.054 5.946 15 C -0.031 4.031 16 H 0.070 0.930 17 C -0.184 4.184 18 C -0.560 4.560 19 H 0.087 0.913 20 C -0.133 4.133 21 N -0.523 5.523 22 Si 0.724 3.276 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.231 0.769 30 H 0.248 0.752 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.176 0.824 35 H 0.117 0.883 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.580 -4.842 11.212 14.925 hybrid contribution 1.028 -0.971 -1.481 2.048 sum -7.552 -5.813 9.731 13.620 Atomic orbital electron populations 1.22469 0.93867 1.03597 1.04085 1.21829 0.94515 0.97535 0.83246 0.85362 1.86613 1.77592 1.29798 1.40297 1.21758 0.79938 0.86112 0.85222 1.90702 1.39569 1.23113 1.86261 1.43487 1.50963 1.31134 1.04711 1.17235 1.01061 0.91413 0.86572 1.20978 1.01564 0.92309 0.98623 1.20942 1.00837 0.99367 0.93561 1.21102 1.00604 0.93758 0.98552 1.21751 0.97246 0.95147 0.98404 1.21531 1.03046 0.97370 0.97080 1.84499 1.82095 0.97908 1.30131 1.21121 0.99477 0.96823 0.85672 0.93011 1.21646 0.96792 0.95558 1.04442 1.21300 0.91022 1.43786 0.99858 0.91319 1.24961 0.98596 0.94348 0.95444 1.69871 1.35873 1.42541 1.04001 0.86434 0.84707 0.78073 0.78428 1.19428 1.20730 1.20736 0.91583 0.90247 0.90689 0.76863 0.75181 0.84928 0.86404 0.86237 0.82382 0.88293 0.96077 0.94152 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.49 37.15 0.35 -0.97 16 2 C 0.09 0.94 4.00 -27.89 -0.11 0.83 16 3 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 4 O -0.54 -6.11 12.99 -55.09 -0.72 -6.83 16 5 C 0.48 6.80 7.01 -10.99 -0.08 6.73 16 6 O -0.52 -9.01 13.74 -14.32 -0.20 -9.21 16 7 N -0.66 -9.61 4.99 -9.71 -0.05 -9.66 16 8 C 0.14 2.44 6.32 -83.43 -0.53 1.91 16 9 C -0.11 -1.94 8.70 -39.42 -0.34 -2.28 16 10 C -0.13 -2.02 10.04 -39.55 -0.40 -2.41 16 11 C -0.12 -2.07 10.04 -39.57 -0.40 -2.47 16 12 C -0.10 -2.04 8.85 -39.39 -0.35 -2.39 16 13 C -0.07 -1.48 6.11 -38.90 -0.24 -1.72 16 14 S -0.19 -3.88 20.11 -107.50 -2.16 -6.04 16 15 C 0.10 2.24 2.02 -27.89 -0.06 2.18 16 16 H 0.05 1.28 7.34 -51.93 -0.38 0.90 16 17 C -0.12 -2.78 8.90 37.15 0.33 -2.45 16 18 C -0.52 -13.21 6.47 -34.44 -0.22 -13.44 16 19 H 0.07 1.83 7.71 -52.49 -0.40 1.43 16 20 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 21 N -0.89 -23.19 11.38 55.43 0.63 -22.56 16 22 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.49 7.80 -51.93 -0.41 0.08 16 29 H 0.38 3.32 8.79 45.56 0.40 3.72 16 30 H 0.41 5.19 7.63 -40.82 -0.31 4.88 16 31 H 0.13 2.20 6.19 -52.49 -0.33 1.87 16 32 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.16 3.53 4.82 -52.49 -0.25 3.28 16 35 H 0.10 2.39 6.23 -51.93 -0.32 2.07 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -29.32 328.96 -8.78 -38.10 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.10 Total: 10.65 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.13 Total: -14.76 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.58 Total: -32.22 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.91 Total: -16.03 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -2.16 Total: -6.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.32 -8.78 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276564036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.795 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds