Wall clock time and date at job start Tue Mar 31 2020 07:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47293 * 2 1 4 4 O 1.42913 * 109.46998 * 119.99683 * 2 1 3 5 5 C 1.50701 * 109.47502 * 239.99492 * 2 1 3 6 6 O 1.21300 * 120.00129 * 245.00069 * 5 2 1 7 7 N 1.34776 * 119.99705 * 65.27404 * 5 2 1 8 8 C 1.40137 * 119.99882 * 175.48123 * 7 5 2 9 9 C 1.38650 * 120.09768 * 34.54038 * 8 7 5 10 10 C 1.38256 * 120.00680 * 179.69885 * 9 8 7 11 11 C 1.38302 * 120.21021 * 0.59240 * 10 9 8 12 12 C 1.38197 * 120.19773 * 359.68473 * 11 10 9 13 13 C 1.38791 * 119.99163 * 0.02562 * 12 11 10 14 14 S 1.76195 * 120.10564 * 179.97438 * 13 12 11 15 15 C 1.81404 * 103.00237 * 4.49436 * 14 13 12 16 16 H 1.08997 * 109.46655 * 49.61535 * 15 14 13 17 17 C 1.52993 * 109.47047 * 169.61698 * 15 14 13 18 18 C 1.50698 * 109.46940 * 289.61636 * 15 14 13 19 19 H 1.08000 * 119.99752 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99821 * 179.97438 * 18 15 14 21 21 N 1.31510 * 119.99878 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99620 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47533 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47112 * 120.00470 * 22 20 18 25 25 H 1.48502 * 109.46810 * 239.99616 * 22 20 18 26 26 H 1.08999 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47775 * 300.00302 * 1 2 3 28 28 H 1.08997 * 109.47301 * 60.00400 * 1 2 3 29 29 H 0.96700 * 113.99692 * 60.00253 * 4 2 1 30 30 H 0.97004 * 119.99898 * 355.48859 * 7 5 2 31 31 H 1.08001 * 119.99708 * 359.97368 * 9 8 7 32 32 H 1.07993 * 119.89389 * 180.32086 * 10 9 8 33 33 H 1.07996 * 119.90378 * 179.70189 * 11 10 9 34 34 H 1.08002 * 120.00476 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.46823 * 185.14087 * 17 15 14 36 36 H 1.09007 * 109.47028 * 305.13698 * 17 15 14 37 37 H 1.08997 * 109.47238 * 65.14175 * 17 15 14 38 38 H 0.97002 * 119.99446 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0324 -0.7105 -1.2304 6 8 2.6531 -1.7469 -1.1213 7 7 1.7967 -0.1915 -2.4517 8 6 2.3439 -0.8001 -3.5891 9 6 2.4831 -2.1786 -3.6411 10 6 3.0175 -2.7776 -4.7668 11 6 3.4260 -2.0051 -5.8387 12 6 3.2966 -0.6299 -5.7938 13 6 2.7557 -0.0203 -4.6703 14 16 2.5899 1.7327 -4.6095 15 6 3.1225 2.2507 -6.2644 16 1 2.6015 1.6576 -7.0160 17 6 2.7942 3.7314 -6.4657 18 6 4.6087 2.0425 -6.4018 19 1 5.1760 1.6386 -5.5763 20 6 5.2441 2.3668 -7.5818 21 7 4.5532 2.8581 -8.5871 22 14 7.0862 2.1080 -7.7522 23 1 7.6266 1.5479 -6.4875 24 1 7.3523 1.1629 -8.8664 25 1 7.7442 3.4082 -8.0383 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.7209 -1.5952 1.2330 30 1 1.2484 0.6035 -2.5432 31 1 2.1700 -2.7849 -2.8040 32 1 3.1203 -3.8519 -4.8074 33 1 3.8472 -2.4778 -6.7136 34 1 3.6170 -0.0296 -6.6324 35 1 3.0301 4.0199 -7.4900 36 1 1.7336 3.8973 -6.2766 37 1 3.3849 4.3318 -5.7739 38 1 5.0002 3.0859 -9.4173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276564036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:54 Heat of formation + Delta-G solvation = -87.698151 kcal Electronic energy + Delta-G solvation = -21359.752473 eV Core-core repulsion = 18099.257360 eV Total energy + Delta-G solvation = -3260.495113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70613 -39.63910 -37.59624 -36.26523 -35.79397 -32.49407 -32.27213 -31.81908 -30.12808 -27.38389 -25.74795 -24.07136 -23.83326 -22.75086 -21.41819 -19.47789 -18.59080 -18.48777 -17.94141 -17.12995 -16.98871 -16.73819 -15.95795 -15.81334 -15.51320 -15.22217 -15.02260 -14.87254 -14.65027 -13.98611 -13.48803 -13.44664 -13.42409 -13.15975 -12.95223 -12.87705 -12.75262 -12.52240 -12.36407 -12.28456 -11.86897 -11.76984 -11.39888 -11.27246 -10.91578 -10.65648 -10.53743 -10.43334 -9.32195 -8.33016 -8.01174 -6.35562 0.22590 0.42499 0.92028 1.36092 1.40724 1.42287 1.50402 1.82078 1.98484 2.37898 2.82205 3.07182 3.23337 3.56357 3.94158 4.01693 4.09300 4.19578 4.41566 4.56014 4.58203 4.65220 4.75224 4.83299 4.83760 4.89038 5.00273 5.18365 5.26040 5.32639 5.35604 5.50849 5.60350 5.63252 5.76905 6.03056 6.05408 6.26377 6.59342 6.66562 6.96847 7.31050 8.82210 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.004559 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.786805 B = 6140.771045 C = 6705.367579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 H 0.140 0.860 4 O -0.552 6.552 5 C 0.482 3.518 6 O -0.554 6.554 7 N -0.653 5.653 8 C 0.137 3.863 9 C -0.120 4.120 10 C -0.112 4.112 11 C -0.124 4.124 12 C -0.123 4.123 13 C -0.103 4.103 14 S -0.168 6.168 15 C 0.090 3.910 16 H 0.029 0.971 17 C -0.115 4.115 18 C -0.524 4.524 19 H 0.051 0.949 20 C 0.033 3.967 21 N -0.906 5.906 22 Si 0.948 3.052 23 H -0.276 1.276 24 H -0.276 1.276 25 H -0.277 1.277 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.393 0.607 30 H 0.420 0.580 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 -6.462 11.598 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.036 3.964 3 H 0.157 0.843 4 O -0.359 6.359 5 C 0.271 3.729 6 O -0.432 6.432 7 N -0.300 5.300 8 C 0.036 3.964 9 C -0.141 4.141 10 C -0.133 4.133 11 C -0.144 4.144 12 C -0.147 4.147 13 C -0.218 4.218 14 S 0.078 5.922 15 C -0.038 4.038 16 H 0.047 0.953 17 C -0.174 4.174 18 C -0.563 4.563 19 H 0.069 0.931 20 C -0.169 4.169 21 N -0.544 5.544 22 Si 0.774 3.226 23 H -0.201 1.201 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.243 0.757 30 H 0.259 0.741 31 H 0.158 0.842 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.161 -5.675 12.577 16.562 hybrid contribution 1.169 -0.829 -1.833 2.327 sum -7.992 -6.505 10.744 14.887 Atomic orbital electron populations 1.22443 0.91149 1.04295 1.05361 1.21955 0.96437 0.97112 0.80862 0.84305 1.86588 1.78151 1.30786 1.40374 1.22574 0.78924 0.85674 0.85765 1.90676 1.41072 1.24773 1.86703 1.43538 1.50833 1.31370 1.04238 1.17382 1.00371 0.91798 0.86827 1.21222 1.01554 0.92105 0.99216 1.21331 0.98632 1.01077 0.92288 1.21330 1.00486 0.92700 0.99878 1.21608 0.98732 0.96379 0.97953 1.21627 1.04920 0.97097 0.98126 1.84106 1.82171 0.98711 1.27174 1.20922 0.98194 0.97117 0.87591 0.95298 1.21489 0.98117 0.94813 1.03021 1.21308 0.92100 1.43504 0.99353 0.93120 1.25534 1.01733 0.94313 0.95292 1.69953 1.37000 1.43167 1.04282 0.85639 0.80919 0.78050 0.77964 1.20128 1.20182 1.20249 0.91222 0.88603 0.89752 0.75681 0.74102 0.84153 0.82829 0.84175 0.85302 0.90390 0.93824 0.94489 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.49 71.98 0.68 -1.35 16 2 C 0.10 1.82 4.00 29.85 0.12 1.94 16 3 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 4 O -0.55 -11.48 12.99 -129.99 -1.69 -13.17 16 5 C 0.48 12.80 7.01 87.66 0.61 13.41 16 6 O -0.55 -18.45 13.74 15.90 0.22 -18.23 16 7 N -0.65 -18.20 4.99 -303.00 -1.51 -19.71 16 8 C 0.14 4.74 6.32 38.22 0.24 4.98 16 9 C -0.12 -3.88 8.70 22.37 0.19 -3.69 16 10 C -0.11 -3.35 10.04 22.29 0.22 -3.13 16 11 C -0.12 -4.16 10.04 22.28 0.22 -3.94 16 12 C -0.12 -5.01 8.85 22.39 0.20 -4.81 16 13 C -0.10 -4.06 6.11 22.71 0.14 -3.92 16 14 S -0.17 -6.75 20.11 -56.49 -1.14 -7.88 16 15 C 0.09 4.27 2.02 29.85 0.06 4.33 16 16 H 0.03 1.50 7.34 -2.39 -0.02 1.48 16 17 C -0.11 -5.17 8.90 71.98 0.64 -4.53 16 18 C -0.52 -27.21 6.47 25.60 0.17 -27.05 16 19 H 0.05 2.77 7.71 -2.91 -0.02 2.75 16 20 C 0.03 1.74 5.30 84.66 0.45 2.19 16 21 N -0.91 -48.29 11.38 21.45 0.24 -48.05 16 22 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.85 7.80 -2.39 -0.02 0.83 16 29 H 0.39 6.15 8.79 -74.06 -0.65 5.50 16 30 H 0.42 9.94 7.63 -92.71 -0.71 9.24 16 31 H 0.14 4.38 6.19 -2.91 -0.02 4.36 16 32 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.13 6.02 4.82 -2.91 -0.01 6.00 16 35 H 0.08 3.84 6.23 -2.38 -0.01 3.83 16 36 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -63.27 328.96 1.85 -61.42 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.26 Total: 26.96 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 3.95 Total: -25.57 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.27 Total: -67.76 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.47 Total: -31.40 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -6.75 SS G_CDS: -1.14 Total: -7.88 kcal Total: -63.27 1.85 -61.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276564036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.274 kcal (2) G-P(sol) polarization free energy of solvation -63.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds