Wall clock time and date at job start Tue Mar 31 2020 07:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46457 * 2 1 4 4 C 1.50693 * 109.47266 * 240.00430 * 2 1 3 5 5 H 1.08000 * 119.99864 * 239.99380 * 4 2 1 6 6 C 1.37873 * 120.00328 * 59.99902 * 4 2 1 7 7 N 1.31518 * 120.00245 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47247 * 89.99788 * 8 6 4 10 10 H 1.48502 * 109.46899 * 209.99782 * 8 6 4 11 11 H 1.48501 * 109.47250 * 329.99372 * 8 6 4 12 12 S 1.81394 * 109.47398 * 119.99885 * 2 1 3 13 13 C 1.76209 * 102.99959 * 286.23767 * 12 2 1 14 14 C 1.38785 * 120.10307 * 1.70180 * 13 12 2 15 15 C 1.38195 * 119.98529 * 180.29608 * 14 13 12 16 16 C 1.38303 * 120.20194 * 359.70148 * 15 14 13 17 17 C 1.38259 * 120.20866 * 359.97438 * 16 15 14 18 18 C 1.38650 * 120.00646 * 0.02673 * 17 16 15 19 19 N 1.40139 * 120.09672 * 179.97438 * 18 17 16 20 20 C 1.34776 * 119.99904 * 335.61253 * 19 18 17 21 21 O 1.21294 * 120.00369 * 354.81980 * 20 19 18 22 22 C 1.50703 * 119.99690 * 174.81804 * 20 19 18 23 23 H 1.08993 * 109.47469 * 55.00446 * 22 20 19 24 24 C 1.52998 * 109.47111 * 295.00019 * 22 20 19 25 25 O 1.42904 * 109.47045 * 175.00126 * 22 20 19 26 26 H 1.08999 * 109.47027 * 64.49149 * 1 2 3 27 27 H 1.09000 * 109.46586 * 184.48553 * 1 2 3 28 28 H 1.08994 * 109.47410 * 304.48616 * 1 2 3 29 29 H 0.96998 * 120.00311 * 180.02562 * 7 6 4 30 30 H 1.07998 * 120.00926 * 359.97438 * 14 13 12 31 31 H 1.07995 * 119.90275 * 179.71983 * 15 14 13 32 32 H 1.07997 * 119.89880 * 180.02562 * 16 15 14 33 33 H 1.07994 * 119.99344 * 180.02562 * 17 16 15 34 34 H 0.97005 * 119.99616 * 155.89088 * 19 18 17 35 35 H 1.08998 * 109.47248 * 59.99927 * 24 22 20 36 36 H 1.09002 * 109.47229 * 180.02562 * 24 22 20 37 37 H 1.09002 * 109.47277 * 299.99925 * 24 22 20 38 38 H 0.96699 * 113.99453 * 59.99602 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4867 -0.1411 -5.1122 11 1 3.6295 -1.7581 -3.7122 12 16 2.1347 -0.8551 1.4811 13 6 1.8142 0.3057 2.7675 14 6 1.1943 1.5130 2.4772 15 6 0.9497 2.4241 3.4870 16 6 1.3152 2.1345 4.7890 17 6 1.9272 0.9315 5.0885 18 6 2.1768 0.0110 4.0821 19 7 2.7975 -1.2088 4.3835 20 6 3.5791 -1.3153 5.4763 21 8 3.8215 -0.3338 6.1466 22 6 4.1518 -2.6538 5.8654 23 1 4.7047 -3.0710 5.0239 24 6 3.0148 -3.6028 6.2495 25 8 5.0320 -2.4897 6.9792 26 1 -0.3633 0.4426 -0.9275 27 1 -0.3632 -1.0245 0.0804 28 1 -0.3634 0.5818 0.8470 29 1 0.7081 1.1610 -3.4844 30 1 0.9079 1.7426 1.4615 31 1 0.4713 3.3651 3.2589 32 1 1.1213 2.8500 5.5744 33 1 2.2108 0.7087 6.1065 34 1 2.6677 -1.9753 3.8033 35 1 2.3434 -3.7280 5.4000 36 1 3.4291 -4.5708 6.5314 37 1 2.4619 -3.1856 7.0911 38 1 4.6065 -2.1217 7.7658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276564038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:57 Heat of formation + Delta-G solvation = -66.409539 kcal Electronic energy + Delta-G solvation = -21168.512072 eV Core-core repulsion = 17908.940103 eV Total energy + Delta-G solvation = -3259.571969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66994 -38.50352 -36.70486 -34.86975 -34.18744 -31.49995 -31.13824 -29.99287 -29.06201 -25.44436 -24.88777 -22.87554 -22.35427 -21.30702 -20.38952 -18.47903 -17.62309 -16.92785 -16.25287 -16.08789 -15.78466 -15.23687 -14.79721 -14.56077 -14.38137 -14.01185 -13.68133 -13.46320 -12.95266 -12.69723 -12.67492 -12.43618 -12.12464 -11.87076 -11.78267 -11.43426 -11.08800 -11.06617 -10.98668 -10.67014 -10.53018 -10.40753 -10.09059 -9.54380 -9.52287 -9.17402 -9.02302 -8.57039 -8.03089 -6.62661 -6.27894 -4.37643 1.44426 1.66655 2.35473 2.51137 2.98562 3.18127 3.25126 3.28957 3.54209 3.97990 4.07532 4.24588 4.44824 4.61216 4.74501 5.04364 5.22574 5.28671 5.32091 5.42610 5.55520 5.69388 5.75857 5.79864 6.16968 6.41645 6.47728 6.52855 6.66091 6.68086 6.72548 6.83715 7.17843 7.22339 7.27016 7.42286 7.53598 7.70502 7.94802 7.99107 8.61374 9.27115 10.77936 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.004260 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.624570 B = 6571.467531 C = 7729.276205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.101 3.899 3 H 0.053 0.947 4 C -0.511 4.511 5 H 0.067 0.933 6 C 0.071 3.929 7 N -0.886 5.886 8 Si 0.907 3.093 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.271 1.271 12 S -0.177 6.177 13 C -0.091 4.091 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.123 4.123 17 C -0.119 4.119 18 C 0.145 3.855 19 N -0.654 5.654 20 C 0.483 3.517 21 O -0.519 6.519 22 C 0.091 3.909 23 H 0.129 0.871 24 C -0.182 4.182 25 O -0.538 6.538 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.021 0.979 29 H 0.267 0.733 30 H 0.141 0.859 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.142 0.858 34 H 0.414 0.586 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -4.285 14.628 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 H 0.071 0.929 4 C -0.551 4.551 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.523 5.523 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.071 5.929 13 C -0.206 4.206 14 C -0.141 4.141 15 C -0.139 4.139 16 C -0.145 4.145 17 C -0.140 4.140 18 C 0.045 3.955 19 N -0.300 5.300 20 C 0.270 3.730 21 O -0.395 6.395 22 C 0.028 3.972 23 H 0.146 0.854 24 C -0.240 4.240 25 O -0.343 6.343 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.252 0.748 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.118 -4.957 14.539 15.402 hybrid contribution -0.826 0.801 -0.972 1.506 sum 0.293 -4.156 13.567 14.192 Atomic orbital electron populations 1.22170 0.96230 1.00107 1.01963 1.21108 0.95637 0.97398 0.88477 0.92931 1.20632 1.32597 1.13295 0.88571 0.91472 1.24889 0.94632 0.94923 0.98882 1.69850 1.35767 1.22461 1.24232 0.86344 0.79413 0.79278 0.81608 1.20327 1.20906 1.19579 1.84964 1.78190 1.27092 1.02677 1.21768 1.04086 0.99457 0.95296 1.21375 0.99325 0.92681 1.00733 1.21046 1.00747 0.99215 0.92865 1.20944 1.00143 0.96867 0.96524 1.21191 0.99713 0.93962 0.99141 1.17255 0.98913 0.87580 0.91771 1.43573 1.46835 1.12678 1.26891 1.21798 0.78085 0.92382 0.80768 1.90669 1.57921 1.38416 1.52485 1.21823 0.92704 0.90869 0.91757 0.85380 1.22466 0.98062 1.00232 1.03245 1.86612 1.38260 1.86130 1.23269 0.88456 0.94177 0.95986 0.92342 0.84183 0.86140 0.86178 0.84063 0.74840 0.90555 0.90177 0.91573 0.76819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.63 37.16 0.32 -2.96 16 2 C 0.10 2.40 1.97 -27.89 -0.05 2.35 16 3 H 0.05 1.35 6.97 -51.92 -0.36 0.99 16 4 C -0.51 -13.29 8.58 -34.44 -0.30 -13.59 16 5 H 0.07 1.75 7.71 -52.49 -0.40 1.35 16 6 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 7 N -0.89 -23.56 11.29 55.43 0.63 -22.93 16 8 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 S -0.18 -3.59 19.91 -107.50 -2.14 -5.73 16 13 C -0.09 -1.71 6.12 -38.90 -0.24 -1.94 16 14 C -0.12 -2.14 8.28 -39.39 -0.33 -2.46 16 15 C -0.12 -1.85 10.04 -39.57 -0.40 -2.25 16 16 C -0.12 -1.82 10.04 -39.55 -0.40 -2.22 16 17 C -0.12 -1.91 8.73 -39.42 -0.34 -2.26 16 18 C 0.15 2.48 6.45 -83.43 -0.54 1.94 16 19 N -0.65 -9.35 5.14 -9.71 -0.05 -9.40 16 20 C 0.48 6.50 6.98 -10.98 -0.08 6.42 16 21 O -0.52 -8.51 13.46 -14.31 -0.19 -8.70 16 22 C 0.09 0.90 4.00 -27.88 -0.11 0.79 16 23 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 24 C -0.18 -1.32 9.49 37.16 0.35 -0.97 16 25 O -0.54 -5.81 12.99 -55.09 -0.72 -6.52 16 26 H 0.10 2.41 5.96 -51.93 -0.31 2.10 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.02 0.44 5.92 -51.93 -0.31 0.13 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.14 2.74 4.55 -52.49 -0.24 2.50 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.14 2.23 5.75 -52.49 -0.30 1.93 16 34 H 0.41 5.33 7.61 -40.82 -0.31 5.02 16 35 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.38 3.12 8.79 45.56 0.40 3.52 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -29.61 326.61 -8.70 -38.31 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.93 Total: 10.28 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.20 Total: -15.41 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.58 Total: -32.33 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.91 Total: -15.22 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.14 Total: -5.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.61 -8.70 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276564038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.096 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds