Wall clock time and date at job start Tue Mar 31 2020 07:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46457 * 2 1 4 4 C 1.50693 * 109.47266 * 240.00430 * 2 1 3 5 5 H 1.08000 * 119.99864 * 239.99380 * 4 2 1 6 6 C 1.37873 * 120.00328 * 59.99902 * 4 2 1 7 7 N 1.31518 * 120.00245 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47247 * 89.99788 * 8 6 4 10 10 H 1.48502 * 109.46899 * 209.99782 * 8 6 4 11 11 H 1.48501 * 109.47250 * 329.99372 * 8 6 4 12 12 S 1.81394 * 109.47398 * 119.99885 * 2 1 3 13 13 C 1.76209 * 102.99959 * 286.23767 * 12 2 1 14 14 C 1.38785 * 120.10307 * 1.70180 * 13 12 2 15 15 C 1.38195 * 119.98529 * 180.29608 * 14 13 12 16 16 C 1.38303 * 120.20194 * 359.70148 * 15 14 13 17 17 C 1.38259 * 120.20866 * 359.97438 * 16 15 14 18 18 C 1.38650 * 120.00646 * 0.02673 * 17 16 15 19 19 N 1.40139 * 120.09672 * 179.97438 * 18 17 16 20 20 C 1.34776 * 119.99904 * 335.61253 * 19 18 17 21 21 O 1.21294 * 120.00369 * 354.81980 * 20 19 18 22 22 C 1.50703 * 119.99690 * 174.81804 * 20 19 18 23 23 H 1.08993 * 109.47469 * 55.00446 * 22 20 19 24 24 C 1.52998 * 109.47111 * 295.00019 * 22 20 19 25 25 O 1.42904 * 109.47045 * 175.00126 * 22 20 19 26 26 H 1.08999 * 109.47027 * 64.49149 * 1 2 3 27 27 H 1.09000 * 109.46586 * 184.48553 * 1 2 3 28 28 H 1.08994 * 109.47410 * 304.48616 * 1 2 3 29 29 H 0.96998 * 120.00311 * 180.02562 * 7 6 4 30 30 H 1.07998 * 120.00926 * 359.97438 * 14 13 12 31 31 H 1.07995 * 119.90275 * 179.71983 * 15 14 13 32 32 H 1.07997 * 119.89880 * 180.02562 * 16 15 14 33 33 H 1.07994 * 119.99344 * 180.02562 * 17 16 15 34 34 H 0.97005 * 119.99616 * 155.89088 * 19 18 17 35 35 H 1.08998 * 109.47248 * 59.99927 * 24 22 20 36 36 H 1.09002 * 109.47229 * 180.02562 * 24 22 20 37 37 H 1.09002 * 109.47277 * 299.99925 * 24 22 20 38 38 H 0.96699 * 113.99453 * 59.99602 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4867 -0.1411 -5.1122 11 1 3.6295 -1.7581 -3.7122 12 16 2.1347 -0.8551 1.4811 13 6 1.8142 0.3057 2.7675 14 6 1.1943 1.5130 2.4772 15 6 0.9497 2.4241 3.4870 16 6 1.3152 2.1345 4.7890 17 6 1.9272 0.9315 5.0885 18 6 2.1768 0.0110 4.0821 19 7 2.7975 -1.2088 4.3835 20 6 3.5791 -1.3153 5.4763 21 8 3.8215 -0.3338 6.1466 22 6 4.1518 -2.6538 5.8654 23 1 4.7047 -3.0710 5.0239 24 6 3.0148 -3.6028 6.2495 25 8 5.0320 -2.4897 6.9792 26 1 -0.3633 0.4426 -0.9275 27 1 -0.3632 -1.0245 0.0804 28 1 -0.3634 0.5818 0.8470 29 1 0.7081 1.1610 -3.4844 30 1 0.9079 1.7426 1.4615 31 1 0.4713 3.3651 3.2589 32 1 1.1213 2.8500 5.5744 33 1 2.2108 0.7087 6.1065 34 1 2.6677 -1.9753 3.8033 35 1 2.3434 -3.7280 5.4000 36 1 3.4291 -4.5708 6.5314 37 1 2.4619 -3.1856 7.0911 38 1 4.6065 -2.1217 7.7658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276564038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:56 Heat of formation + Delta-G solvation = -84.616302 kcal Electronic energy + Delta-G solvation = -21169.301577 eV Core-core repulsion = 17908.940103 eV Total energy + Delta-G solvation = -3260.361474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79667 -39.69210 -37.63062 -36.30763 -35.84520 -32.84497 -32.31182 -31.58333 -30.18899 -27.39785 -25.77621 -24.15313 -23.72690 -22.98031 -21.48938 -19.67289 -18.88212 -18.25139 -17.94470 -17.15903 -16.98229 -16.76214 -16.01609 -15.81687 -15.55681 -15.30237 -15.06708 -14.92261 -14.38799 -14.18554 -13.70959 -13.47209 -13.29942 -13.17834 -13.00102 -12.87619 -12.83913 -12.58371 -12.44573 -12.20037 -11.88941 -11.78596 -11.51896 -11.37523 -10.86627 -10.67145 -10.51260 -10.49315 -9.31934 -8.24585 -8.16295 -6.41584 0.17556 0.33411 0.81444 1.41536 1.41915 1.43351 1.53669 1.79151 1.94821 2.38032 2.77940 3.05194 3.21225 3.51737 3.89400 3.92168 4.07162 4.14764 4.37125 4.46951 4.49932 4.59290 4.73716 4.80757 4.81537 4.86033 4.89948 5.14700 5.16706 5.27270 5.32114 5.42871 5.54869 5.57700 5.75766 5.99589 6.02363 6.22696 6.57832 6.61092 6.90436 7.26341 8.80610 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.004260 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.624570 B = 6571.467531 C = 7729.276205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.096 3.904 3 H 0.024 0.976 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.269 1.269 12 S -0.167 6.167 13 C -0.116 4.116 14 C -0.133 4.133 15 C -0.118 4.118 16 C -0.109 4.109 17 C -0.127 4.127 18 C 0.143 3.857 19 N -0.653 5.653 20 C 0.482 3.518 21 O -0.549 6.549 22 C 0.099 3.901 23 H 0.141 0.859 24 C -0.175 4.175 25 O -0.551 6.551 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.269 0.731 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.420 0.580 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -4.910 15.981 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.032 4.032 3 H 0.042 0.958 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.174 4.174 7 N -0.547 5.547 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.194 1.194 12 S 0.079 5.921 13 C -0.231 4.231 14 C -0.157 4.157 15 C -0.139 4.139 16 C -0.130 4.130 17 C -0.148 4.148 18 C 0.042 3.958 19 N -0.299 5.299 20 C 0.271 3.729 21 O -0.427 6.427 22 C 0.036 3.964 23 H 0.158 0.842 24 C -0.233 4.233 25 O -0.357 6.357 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.258 0.742 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.214 -5.592 15.917 16.914 hybrid contribution -0.840 1.071 -1.234 1.837 sum 0.374 -4.521 14.683 15.368 Atomic orbital electron populations 1.21973 0.95611 0.99970 1.01391 1.20860 0.96153 0.96089 0.90058 0.95803 1.20899 1.32862 1.13386 0.89949 0.92119 1.25656 0.94697 0.95532 1.01530 1.69959 1.36426 1.23443 1.24861 0.85416 0.78930 0.78324 0.78213 1.19579 1.20511 1.19385 1.84611 1.78762 1.27094 1.01596 1.21766 1.06334 0.99676 0.95354 1.21365 1.00218 0.93471 1.00658 1.21329 1.00369 0.99616 0.92548 1.21369 0.97864 0.96754 0.96996 1.21421 0.99883 0.94387 0.99147 1.17433 0.98446 0.88719 0.91182 1.43649 1.46814 1.12036 1.27362 1.22566 0.77105 0.93465 0.79730 1.90644 1.58941 1.39853 1.53273 1.21942 0.93457 0.89006 0.91999 0.84189 1.22440 0.97145 1.00136 1.03572 1.86590 1.39118 1.86156 1.23886 0.90787 0.94233 0.94398 0.92213 0.86158 0.83468 0.82578 0.83507 0.74173 0.90047 0.88548 0.91232 0.75635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.63 71.98 0.62 -5.40 16 2 C 0.10 4.72 1.97 29.85 0.06 4.78 16 3 H 0.02 1.29 6.97 -2.39 -0.02 1.27 16 4 C -0.53 -28.24 8.58 25.60 0.22 -28.02 16 5 H 0.06 3.22 7.71 -2.91 -0.02 3.20 16 6 C 0.03 1.46 5.29 84.65 0.45 1.90 16 7 N -0.91 -49.35 11.29 21.45 0.24 -49.11 16 8 Si 0.97 41.58 29.54 68.60 2.03 43.61 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 S -0.17 -6.88 19.91 -56.49 -1.12 -8.00 16 13 C -0.12 -4.37 6.12 22.71 0.14 -4.23 16 14 C -0.13 -4.87 8.28 22.39 0.19 -4.69 16 15 C -0.12 -3.50 10.04 22.28 0.22 -3.27 16 16 C -0.11 -2.93 10.04 22.29 0.22 -2.71 16 17 C -0.13 -3.87 8.73 22.37 0.20 -3.67 16 18 C 0.14 4.76 6.45 38.22 0.25 5.00 16 19 N -0.65 -18.00 5.14 -303.01 -1.56 -19.56 16 20 C 0.48 12.34 6.98 87.66 0.61 12.96 16 21 O -0.55 -17.35 13.46 15.91 0.21 -17.14 16 22 C 0.10 1.75 4.00 29.85 0.12 1.87 16 23 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 24 C -0.18 -2.11 9.49 71.98 0.68 -1.43 16 25 O -0.55 -10.90 12.99 -129.99 -1.69 -12.59 16 26 H 0.07 3.78 5.96 -2.39 -0.01 3.76 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.58 5.92 -2.39 -0.01 1.57 16 29 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.12 4.86 4.55 -2.91 -0.01 4.85 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.15 4.37 5.75 -2.91 -0.02 4.35 16 34 H 0.42 10.40 7.61 -92.70 -0.71 9.70 16 35 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.39 5.77 8.79 -74.06 -0.65 5.11 16 Total: -1.00 -64.04 326.61 1.84 -62.21 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.25 Total: 27.49 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.98 Total: -26.90 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -1.32 Total: -68.67 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.48 Total: -29.73 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.12 Total: -8.00 kcal Total: -64.04 1.84 -62.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276564038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.411 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds