Wall clock time and date at job start Tue Mar 31 2020 07:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34757 * 116.99850 * 2 1 4 4 O 1.21514 * 120.00288 * 359.97438 * 3 2 1 5 5 C 1.47403 * 120.00102 * 180.02562 * 3 2 1 6 6 C 1.39666 * 120.48011 * 359.97438 * 5 3 2 7 7 N 1.31628 * 120.51067 * 179.97438 * 6 5 3 8 8 C 1.32649 * 121.64373 * 0.02562 * 7 6 5 9 9 N 1.38433 * 119.53320 * 180.02562 * 8 7 6 10 10 C 1.46497 * 120.00083 * 354.57865 * 9 8 7 11 11 H 1.09002 * 109.46746 * 35.00706 * 10 9 8 12 12 C 1.53001 * 109.47279 * 275.00781 * 10 9 8 13 13 C 1.50699 * 109.47117 * 155.00281 * 10 9 8 14 14 H 1.08001 * 120.00017 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99853 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00318 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46813 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47199 * 119.99627 * 17 15 13 20 20 H 1.48497 * 109.47152 * 239.99995 * 17 15 13 21 21 C 1.39376 * 120.93072 * 0.02562 * 8 7 6 22 22 N 1.48022 * 120.30196 * 179.97438 * 21 8 7 23 23 O 1.21799 * 120.00243 * 322.72172 * 22 21 8 24 24 O 1.21798 * 119.99660 * 142.44539 * 22 21 8 25 25 C 1.36863 * 119.38845 * 0.25379 * 21 8 7 26 26 H 1.09004 * 109.47092 * 59.99791 * 1 2 3 27 27 H 1.08995 * 109.47152 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46729 * 300.00120 * 1 2 3 29 29 H 1.08002 * 119.74280 * 359.97438 * 6 5 3 30 30 H 0.96998 * 119.99682 * 174.58932 * 9 8 7 31 31 H 1.09006 * 109.46708 * 180.02562 * 12 10 9 32 32 H 1.08997 * 109.46791 * 299.99461 * 12 10 9 33 33 H 1.08994 * 109.47332 * 59.99824 * 12 10 9 34 34 H 0.97002 * 120.00465 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.75325 * 179.72238 * 25 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.3063 0.1130 -0.0006 7 7 5.6208 0.1813 -0.0016 8 6 6.2572 1.3451 -0.0021 9 7 7.6414 1.3659 -0.0037 10 6 8.3929 0.1140 0.1150 11 1 7.8569 -0.6819 -0.4019 12 6 8.5461 -0.2506 1.5930 13 6 9.7561 0.2859 -0.5040 14 1 10.0350 1.2330 -0.9417 15 6 10.6473 -0.7661 -0.5115 16 7 10.3080 -1.9192 0.0219 17 14 12.3374 -0.5529 -1.2782 18 1 12.4713 0.8291 -1.8047 19 1 13.3814 -0.7947 -0.2502 20 1 12.5029 -1.5237 -2.3896 21 6 5.5520 2.5473 -0.0011 22 7 6.2764 3.8381 -0.0012 23 8 7.3069 3.9583 0.6370 24 8 5.8446 4.7787 -0.6434 25 6 4.1836 2.5232 0.0058 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.8197 -0.8512 0.0003 30 1 8.1136 2.2094 -0.0834 31 1 9.1057 -1.1819 1.6813 32 1 9.0822 0.5453 2.1099 33 1 7.5602 -0.3749 2.0407 34 1 10.9352 -2.6593 0.0170 35 1 3.6151 3.4415 0.0112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276616161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:54 Heat of formation + Delta-G solvation = -46.029877 kcal Electronic energy + Delta-G solvation = -23436.709315 eV Core-core repulsion = 19631.727860 eV Total energy + Delta-G solvation = -3804.981455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.15145 -40.81649 -39.81309 -36.85480 -36.49405 -36.05222 -33.33933 -33.13382 -31.24885 -28.98783 -27.77880 -26.47666 -25.48503 -24.08683 -23.41585 -21.49213 -20.66675 -19.35096 -18.81095 -18.34041 -17.52809 -17.21018 -16.93479 -16.53110 -16.38483 -15.93076 -15.03303 -14.63063 -14.35972 -13.83310 -13.70244 -13.42361 -13.30721 -12.71346 -12.38025 -12.25120 -11.48699 -11.43511 -11.35401 -11.21138 -11.01638 -11.00018 -10.94872 -10.80894 -10.60401 -10.51431 -10.39257 -10.15596 -9.67720 -9.25410 -8.70148 -7.83199 -6.32650 -4.43131 0.16473 0.55129 1.28031 1.49244 2.38943 2.50168 3.14650 3.20753 3.24448 3.32429 3.52802 4.12854 4.21544 4.45887 4.49256 4.68197 4.81946 4.89100 4.96550 5.01406 5.19636 5.33109 5.57131 5.89857 6.13528 6.42515 6.51864 6.71667 6.77679 6.94466 7.19198 7.41955 7.55041 7.58661 7.77303 7.78368 7.86450 8.17315 8.60795 9.24696 10.73241 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.004214 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.849790 B = 6643.475632 C = 7795.951893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.530 3.470 4 O -0.516 6.516 5 C -0.276 4.276 6 C 0.263 3.737 7 N -0.518 5.518 8 C 0.482 3.518 9 N -0.638 5.638 10 C 0.256 3.744 11 H 0.067 0.933 12 C -0.146 4.146 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.072 3.928 16 N -0.880 5.880 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.191 4.191 22 N 0.045 4.955 23 O -0.170 6.170 24 O -0.158 6.158 25 C 0.097 3.903 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.185 0.815 30 H 0.414 0.586 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.990 1.744 0.685 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 C 0.375 3.625 4 O -0.405 6.405 5 C -0.285 4.285 6 C 0.093 3.907 7 N -0.236 5.236 8 C 0.234 3.766 9 N -0.256 5.256 10 C 0.155 3.845 11 H 0.085 0.915 12 C -0.205 4.205 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.132 4.132 16 N -0.517 5.517 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.284 4.284 22 N 0.562 4.438 23 O -0.381 6.381 24 O -0.375 6.375 25 C 0.072 3.928 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.202 0.798 30 H 0.254 0.746 31 H 0.117 0.883 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.587 0.347 0.763 14.611 hybrid contribution 0.529 1.535 -0.382 1.668 sum -14.057 1.882 0.381 14.188 Atomic orbital electron populations 1.23279 0.75763 1.03805 1.02643 1.86525 1.23677 1.32334 1.84602 1.20469 0.88050 0.81525 0.72428 1.90847 1.66652 1.35953 1.47063 1.19352 0.90826 0.93964 1.24352 1.23372 0.87786 0.98422 0.81076 1.67999 1.10037 1.22809 1.22725 1.18432 0.87578 0.86382 0.84204 1.46635 1.00539 1.15081 1.63383 1.19282 0.90763 0.79626 0.94791 0.91524 1.22111 0.98607 1.03536 0.96225 1.21171 0.98126 0.99212 1.39699 0.91786 1.24832 0.98895 0.94725 0.94767 1.69873 1.36139 1.02334 1.43351 0.86314 0.82955 0.78485 0.78990 1.19557 1.20585 1.20685 1.20892 0.93170 0.83226 1.31137 1.43280 1.00488 1.01972 0.98068 1.94524 1.12771 1.89235 1.41532 1.94519 1.70746 1.31659 1.40588 1.20726 0.90447 0.99329 0.82329 0.91800 0.87864 0.91830 0.79806 0.74570 0.88329 0.94850 0.96448 0.92299 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.66 9.83 -40.65 -0.40 -4.06 16 3 C 0.53 6.66 7.89 34.46 0.27 6.93 16 4 O -0.52 -7.57 16.20 -19.28 -0.31 -7.88 16 5 C -0.28 -3.62 5.89 -104.83 -0.62 -4.24 16 6 C 0.26 3.45 10.79 -17.11 -0.18 3.26 16 7 N -0.52 -8.81 9.12 -12.13 -0.11 -8.92 16 8 C 0.48 8.78 7.41 -155.27 -1.15 7.63 16 9 N -0.64 -13.01 4.98 -55.09 -0.27 -13.28 16 10 C 0.26 5.95 2.61 -69.08 -0.18 5.77 16 11 H 0.07 1.68 7.44 -51.93 -0.39 1.30 16 12 C -0.15 -3.31 9.27 37.16 0.34 -2.97 16 13 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 16 N -0.88 -23.07 11.32 55.43 0.63 -22.44 16 17 Si 0.91 19.96 29.54 -169.99 -5.02 14.94 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.19 -3.18 6.49 -80.02 -0.52 -3.70 16 22 N 0.05 0.80 4.28 33.93 0.15 0.95 16 23 O -0.17 -3.19 16.73 -29.46 -0.49 -3.68 16 24 O -0.16 -2.75 18.98 -29.46 -0.56 -3.31 16 25 C 0.10 1.39 9.27 -39.28 -0.36 1.02 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.19 1.80 7.61 -52.49 -0.40 1.40 16 30 H 0.41 8.36 6.06 -40.82 -0.25 8.11 16 31 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.16 2.12 7.71 -52.48 -0.40 1.71 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -28.06 318.17 -6.74 -34.79 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.41 Total: 5.40 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.73 Total: 2.71 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.39 Total: -43.70 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.76 Total: -18.93 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.06 -6.74 -34.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276616161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.236 kcal (2) G-P(sol) polarization free energy of solvation -28.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds