Wall clock time and date at job start Tue Mar 31 2020 07:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34757 * 116.99850 * 2 1 4 4 O 1.21514 * 120.00288 * 359.97438 * 3 2 1 5 5 C 1.47403 * 120.00102 * 180.02562 * 3 2 1 6 6 C 1.39666 * 120.48011 * 359.97438 * 5 3 2 7 7 N 1.31628 * 120.51067 * 179.97438 * 6 5 3 8 8 C 1.32649 * 121.64373 * 0.02562 * 7 6 5 9 9 N 1.38433 * 119.53320 * 180.02562 * 8 7 6 10 10 C 1.46497 * 120.00083 * 354.57865 * 9 8 7 11 11 H 1.09002 * 109.46746 * 35.00706 * 10 9 8 12 12 C 1.53001 * 109.47279 * 275.00781 * 10 9 8 13 13 C 1.50699 * 109.47117 * 155.00281 * 10 9 8 14 14 H 1.08001 * 120.00017 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99853 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00318 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46813 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47199 * 119.99627 * 17 15 13 20 20 H 1.48497 * 109.47152 * 239.99995 * 17 15 13 21 21 C 1.39376 * 120.93072 * 0.02562 * 8 7 6 22 22 N 1.48022 * 120.30196 * 179.97438 * 21 8 7 23 23 O 1.21799 * 120.00243 * 322.72172 * 22 21 8 24 24 O 1.21798 * 119.99660 * 142.44539 * 22 21 8 25 25 C 1.36863 * 119.38845 * 0.25379 * 21 8 7 26 26 H 1.09004 * 109.47092 * 59.99791 * 1 2 3 27 27 H 1.08995 * 109.47152 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46729 * 300.00120 * 1 2 3 29 29 H 1.08002 * 119.74280 * 359.97438 * 6 5 3 30 30 H 0.96998 * 119.99682 * 174.58932 * 9 8 7 31 31 H 1.09006 * 109.46708 * 180.02562 * 12 10 9 32 32 H 1.08997 * 109.46791 * 299.99461 * 12 10 9 33 33 H 1.08994 * 109.47332 * 59.99824 * 12 10 9 34 34 H 0.97002 * 120.00465 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.75325 * 179.72238 * 25 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.3063 0.1130 -0.0006 7 7 5.6208 0.1813 -0.0016 8 6 6.2572 1.3451 -0.0021 9 7 7.6414 1.3659 -0.0037 10 6 8.3929 0.1140 0.1150 11 1 7.8569 -0.6819 -0.4019 12 6 8.5461 -0.2506 1.5930 13 6 9.7561 0.2859 -0.5040 14 1 10.0350 1.2330 -0.9417 15 6 10.6473 -0.7661 -0.5115 16 7 10.3080 -1.9192 0.0219 17 14 12.3374 -0.5529 -1.2782 18 1 12.4713 0.8291 -1.8047 19 1 13.3814 -0.7947 -0.2502 20 1 12.5029 -1.5237 -2.3896 21 6 5.5520 2.5473 -0.0011 22 7 6.2764 3.8381 -0.0012 23 8 7.3069 3.9583 0.6370 24 8 5.8446 4.7787 -0.6434 25 6 4.1836 2.5232 0.0058 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.8197 -0.8512 0.0003 30 1 8.1136 2.2094 -0.0834 31 1 9.1057 -1.1819 1.6813 32 1 9.0822 0.5453 2.1099 33 1 7.5602 -0.3749 2.0407 34 1 10.9352 -2.6593 0.0170 35 1 3.6151 3.4415 0.0112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276616161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:54 Heat of formation + Delta-G solvation = -61.347371 kcal Electronic energy + Delta-G solvation = -23437.373532 eV Core-core repulsion = 19631.727860 eV Total energy + Delta-G solvation = -3805.645672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.50969 -41.96204 -40.94681 -38.23317 -37.59781 -37.46321 -35.05222 -34.40638 -32.73443 -30.50852 -28.65350 -27.75873 -27.33976 -25.33378 -24.73635 -22.71426 -22.24308 -20.57027 -20.18812 -19.73078 -18.79796 -18.50980 -18.21559 -17.77972 -17.42646 -17.32023 -16.70847 -15.97110 -15.70162 -15.24452 -14.74886 -14.50555 -14.41441 -14.34834 -13.91630 -13.18189 -13.07973 -12.98387 -12.86858 -12.78520 -12.63847 -12.42825 -12.34778 -12.19240 -11.91094 -11.81122 -11.79239 -11.63839 -11.15046 -10.93414 -10.59512 -9.28603 -8.25500 -6.41940 -1.15066 -0.63975 -0.02027 0.17348 1.29073 1.40424 1.43420 1.53425 1.58134 1.86551 2.33105 2.38308 2.91063 3.06006 3.18664 3.39399 3.53556 3.64779 4.09742 4.37282 4.41866 4.44569 4.63795 4.78985 4.81184 4.89582 4.96117 5.09204 5.23966 5.28449 5.49733 5.63745 5.77521 6.01914 6.16120 6.38380 6.54351 6.60111 6.78761 7.28929 8.80116 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.004214 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.849790 B = 6643.475632 C = 7795.951893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.538 3.462 4 O -0.535 6.535 5 C -0.258 4.258 6 C 0.274 3.726 7 N -0.542 5.542 8 C 0.475 3.525 9 N -0.657 5.657 10 C 0.269 3.731 11 H 0.043 0.957 12 C -0.133 4.133 13 C -0.561 4.561 14 H 0.058 0.942 15 C 0.030 3.970 16 N -0.903 5.903 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.196 4.196 22 N 0.046 4.954 23 O -0.203 6.203 24 O -0.143 6.143 25 C 0.101 3.899 26 H 0.065 0.935 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.222 0.778 30 H 0.411 0.589 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.269 0.731 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.846 1.372 0.363 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.383 3.617 4 O -0.426 6.426 5 C -0.266 4.266 6 C 0.107 3.893 7 N -0.261 5.261 8 C 0.229 3.771 9 N -0.279 5.279 10 C 0.167 3.833 11 H 0.061 0.939 12 C -0.192 4.192 13 C -0.600 4.600 14 H 0.076 0.924 15 C -0.172 4.172 16 N -0.541 5.541 17 Si 0.789 3.211 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.288 4.288 22 N 0.561 4.439 23 O -0.406 6.406 24 O -0.366 6.366 25 C 0.076 3.924 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.083 0.917 29 H 0.238 0.762 30 H 0.252 0.748 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -16.465 -0.056 0.483 16.472 hybrid contribution 0.781 1.630 -0.322 1.836 sum -15.683 1.574 0.161 15.763 Atomic orbital electron populations 1.23644 0.73656 1.06117 1.02833 1.86516 1.25604 1.30683 1.83823 1.20246 0.87502 0.81962 0.71945 1.90854 1.66950 1.36869 1.47939 1.19496 0.91583 0.93440 1.22035 1.23954 0.86432 0.99994 0.78918 1.68046 1.11830 1.22517 1.23701 1.18545 0.86891 0.87369 0.84272 1.46251 1.01460 1.13712 1.66453 1.18828 0.89888 0.80280 0.94292 0.93910 1.21920 0.98735 1.02158 0.96342 1.21458 0.99445 0.99086 1.39962 0.92382 1.25549 1.01974 0.94504 0.95158 1.69966 1.37185 1.02848 1.44054 0.85409 0.79155 0.78249 0.78245 1.19571 1.20129 1.20287 1.20896 0.93722 0.82141 1.32086 1.43425 1.00382 1.02307 0.97776 1.94534 1.13671 1.89605 1.42768 1.94490 1.70317 1.32008 1.39809 1.20929 0.89430 1.00543 0.81528 0.91655 0.84563 0.91664 0.76152 0.74841 0.90432 0.95244 0.95314 0.92116 0.80639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -5.97 9.83 -56.68 -0.56 -6.53 16 3 C 0.54 11.89 7.89 70.24 0.55 12.44 16 4 O -0.53 -14.29 16.20 19.79 0.32 -13.97 16 5 C -0.26 -6.08 5.89 -20.00 -0.12 -6.20 16 6 C 0.27 6.51 10.79 85.07 0.92 7.43 16 7 N -0.54 -17.96 9.12 -192.28 -1.75 -19.72 16 8 C 0.48 17.25 7.41 133.24 0.99 18.24 16 9 N -0.66 -27.43 4.98 -328.21 -1.64 -29.07 16 10 C 0.27 12.83 2.61 44.25 0.12 12.94 16 11 H 0.04 2.23 7.44 -2.39 -0.02 2.21 16 12 C -0.13 -6.15 9.27 71.98 0.67 -5.48 16 13 C -0.56 -29.10 8.73 25.60 0.22 -28.88 16 14 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 15 C 0.03 1.55 5.30 84.65 0.45 1.99 16 16 N -0.90 -47.95 11.32 21.44 0.24 -47.71 16 17 Si 0.96 41.17 29.54 68.60 2.03 43.19 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 21 C -0.20 -6.37 6.49 36.33 0.24 -6.13 16 22 N 0.05 1.63 4.28 -46.57 -0.20 1.43 16 23 O -0.20 -7.75 16.73 18.89 0.32 -7.43 16 24 O -0.14 -4.88 18.98 18.89 0.36 -4.52 16 25 C 0.10 2.69 9.27 22.47 0.21 2.90 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.22 3.49 7.61 -2.91 -0.02 3.47 16 30 H 0.41 17.22 6.06 -92.71 -0.56 16.66 16 31 H 0.08 3.91 6.07 -2.38 -0.01 3.90 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 35 H 0.18 4.21 7.71 -2.91 -0.02 4.19 16 Total: -1.00 -60.50 318.17 5.15 -55.35 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.59 Total: 18.18 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.44 Total: 10.79 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -3.35 Total: -95.07 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: 0.44 Total: -32.45 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -60.50 5.15 -55.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276616161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.000 kcal (2) G-P(sol) polarization free energy of solvation -60.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds