Wall clock time and date at job start Tue Mar 31 2020 07:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47636 * 323.66873 * 3 2 1 5 5 C 1.36939 * 120.00378 * 263.93260 * 4 3 2 6 6 H 1.08001 * 119.99572 * 199.38458 * 5 4 3 7 7 C 1.38811 * 119.99960 * 19.38169 * 5 4 3 8 8 N 1.31625 * 119.99903 * 22.28367 * 7 5 4 9 9 Si 1.86797 * 119.99968 * 202.28562 * 7 5 4 10 10 H 1.48493 * 109.47339 * 59.99809 * 9 7 5 11 11 H 1.48495 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47079 * 300.00092 * 9 7 5 13 13 C 1.46510 * 119.99639 * 83.92544 * 4 3 2 14 14 C 1.52999 * 109.46620 * 90.00474 * 13 4 3 15 15 H 1.08993 * 109.47277 * 60.00086 * 14 13 4 16 16 O 1.42899 * 109.47157 * 299.99435 * 14 13 4 17 17 C 1.53002 * 109.46605 * 179.97438 * 14 13 4 18 18 O 1.42904 * 109.47148 * 184.99852 * 17 14 13 19 19 C 1.42900 * 114.00161 * 180.02562 * 18 17 14 20 20 C 1.50702 * 109.47114 * 180.02562 * 19 18 17 21 21 C 1.33393 * 125.20093 * 89.99631 * 20 19 18 22 22 C 1.38421 * 114.91812 * 179.97438 * 21 20 19 23 23 C 1.33389 * 114.91928 * 0.02562 * 22 21 20 24 24 S 1.75881 * 109.59774 * 359.75476 * 23 22 21 25 25 H 4.40647 * 5.51552 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.47051 * 203.66719 * 3 2 1 27 27 H 1.09000 * 109.47260 * 83.67393 * 3 2 1 28 28 H 0.96997 * 119.99951 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47005 * 210.00163 * 13 4 3 30 30 H 1.08993 * 109.47225 * 330.00528 * 13 4 3 31 31 H 0.96699 * 114.00522 * 300.00482 * 16 14 13 32 32 H 1.08993 * 109.47397 * 305.00071 * 17 14 13 33 33 H 1.09006 * 109.47102 * 65.00003 * 17 14 13 34 34 H 1.09004 * 109.46954 * 300.00014 * 19 18 17 35 35 H 1.08993 * 109.47515 * 59.99719 * 19 18 17 36 36 H 1.08002 * 122.53720 * 359.95823 * 21 20 19 37 37 H 1.07996 * 122.53859 * 180.02562 * 22 21 20 38 38 H 1.08005 * 125.20163 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1118 0.8182 5 6 3.4813 -0.8994 2.1260 6 1 4.1201 -1.6047 2.6367 7 6 3.0115 0.2224 2.7950 8 7 1.9266 0.8354 2.3708 9 14 3.9188 0.8622 4.2972 10 1 5.3080 1.2257 3.9189 11 1 3.2191 2.0610 4.8248 12 1 3.9504 -0.1920 5.3427 13 6 3.2531 -2.4516 0.2374 14 6 4.6465 -2.6225 -0.3709 15 1 5.4003 -2.4955 0.4061 16 8 4.8443 -1.6419 -1.3914 17 6 4.7702 -4.0219 -0.9769 18 8 6.1066 -4.2236 -1.4411 19 6 6.3304 -5.5067 -2.0289 20 6 7.7646 -5.6095 -2.4800 21 6 8.7747 -6.0602 -1.7345 22 6 10.0078 -6.0633 -2.3635 23 6 9.9990 -5.6145 -3.6196 24 16 8.3615 -5.1596 -4.0721 25 1 -1.0499 -0.0005 0.0001 26 1 3.0089 0.9421 0.4125 27 1 3.0094 -0.1124 -1.0214 28 1 1.5985 1.6195 2.8381 29 1 3.1023 -3.1996 1.0158 30 1 2.4994 -2.5786 -0.5395 31 1 4.2075 -1.6954 -2.1171 32 1 4.5323 -4.7683 -0.2191 33 1 4.0769 -4.1186 -1.8125 34 1 6.1247 -6.2843 -1.2932 35 1 5.6695 -5.6339 -2.8863 36 1 8.6407 -6.3970 -0.7171 37 1 10.9086 -6.4033 -1.8743 38 1 10.8644 -5.5455 -4.2621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281237998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:36 Heat of formation + Delta-G solvation = 4.333169 kcal Electronic energy + Delta-G solvation = -20707.371053 eV Core-core repulsion = 17450.866717 eV Total energy + Delta-G solvation = -3256.504335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.78700 -38.85798 -37.92201 -36.67815 -33.46893 -33.21660 -32.14462 -30.64524 -27.96012 -27.41015 -26.38425 -23.85143 -23.64524 -22.28809 -20.20922 -19.33781 -18.46030 -18.31024 -17.71088 -17.18662 -16.94645 -16.72896 -16.31229 -15.77051 -15.63645 -15.29030 -14.92229 -14.50614 -13.99360 -13.77359 -13.73084 -13.40260 -13.36341 -13.13305 -12.71041 -12.69436 -12.55683 -12.41794 -12.20006 -12.03577 -11.73809 -11.66452 -11.19913 -10.76835 -10.61397 -10.52715 -10.31378 -9.71210 -9.40431 -8.83600 -7.82647 -5.25076 -0.01693 0.69590 1.08386 1.46253 1.50680 1.56196 1.76933 2.31547 2.53435 2.59879 2.81639 3.29665 3.65834 3.76333 3.93147 4.12014 4.14855 4.18382 4.22841 4.29889 4.40873 4.52093 4.53772 4.58756 4.66176 4.72937 4.98568 5.03149 5.18436 5.27581 5.34336 5.34928 5.55540 5.64676 5.69589 6.20331 6.30916 7.01856 7.11280 7.37785 7.84414 8.26957 9.17801 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.003087 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.065748 B = 9067.956114 C = 9845.059982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.134 4.134 3 C 0.276 3.724 4 N -0.591 5.591 5 C -0.274 4.274 6 H 0.072 0.928 7 C -0.043 4.043 8 N -0.910 5.910 9 Si 0.956 3.044 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.277 1.277 13 C 0.125 3.875 14 C 0.102 3.898 15 H 0.072 0.928 16 O -0.564 6.564 17 C 0.040 3.960 18 O -0.397 6.397 19 C 0.128 3.872 20 C -0.202 4.202 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.209 4.209 24 S 0.095 5.905 25 H 0.222 0.778 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.246 0.754 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.376 0.624 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.633 -15.678 -12.976 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.137 4.137 3 C 0.151 3.849 4 N -0.311 5.311 5 C -0.404 4.404 6 H 0.090 0.910 7 C -0.240 4.240 8 N -0.555 5.555 9 Si 0.785 3.215 10 H -0.210 1.210 11 H -0.223 1.223 12 H -0.203 1.203 13 C -0.002 4.002 14 C 0.040 3.960 15 H 0.090 0.910 16 O -0.370 6.370 17 C -0.037 4.037 18 O -0.317 6.317 19 C 0.050 3.950 20 C -0.320 4.320 21 C -0.158 4.158 22 C -0.178 4.178 23 C -0.344 4.344 24 S 0.358 5.642 25 H 0.238 0.762 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.560 -14.658 -13.803 22.736 hybrid contribution 0.021 -0.206 2.078 2.088 sum 10.581 -14.865 -11.726 21.689 Atomic orbital electron populations 1.24994 0.96330 1.03467 1.06383 1.24756 0.96186 0.97573 0.95209 1.17601 0.82485 0.91732 0.93090 1.43933 1.74805 1.03976 1.08370 1.19403 1.23861 1.08209 0.88928 0.91048 1.25542 0.96844 1.00794 1.00812 1.70277 1.20504 1.21861 1.42815 0.85513 0.78349 0.77553 0.80057 1.21029 1.22307 1.20286 1.21439 0.94277 0.87026 0.97421 1.22503 0.98625 0.85519 0.89355 0.91003 1.86614 1.58467 1.56769 1.35104 1.23253 0.83584 0.97720 0.99146 1.88043 1.30054 1.34228 1.79414 1.20862 0.90049 0.86225 0.97824 1.24381 0.99717 1.09417 0.98440 1.20492 0.91975 1.01773 1.01550 1.20466 0.99214 1.03286 0.94852 1.26040 1.00338 1.07020 1.01020 1.84312 1.02315 1.64181 1.13372 0.76162 0.92684 0.91272 0.94410 0.92309 0.92221 0.77604 0.90985 0.91035 0.89945 0.91273 0.83250 0.81912 0.79368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.00 19.25 74.32 1.43 -11.57 16 2 C -0.13 -6.50 11.50 31.12 0.36 -6.15 16 3 C 0.28 13.25 5.20 84.57 0.44 13.69 16 4 N -0.59 -28.56 2.41 -712.55 -1.72 -30.28 16 5 C -0.27 -14.85 9.63 84.03 0.81 -14.04 16 6 H 0.07 3.78 7.92 -2.91 -0.02 3.75 16 7 C -0.04 -2.40 4.82 84.86 0.41 -1.99 16 8 N -0.91 -52.90 9.61 21.65 0.21 -52.69 16 9 Si 0.96 45.31 29.61 68.60 2.03 47.34 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.13 4.69 5.37 86.38 0.46 5.15 16 14 C 0.10 3.43 3.52 30.59 0.11 3.54 16 15 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 16 O -0.56 -19.81 11.93 -144.37 -1.72 -21.54 16 17 C 0.04 1.02 5.57 71.98 0.40 1.42 16 18 O -0.40 -11.29 10.29 -144.37 -1.49 -12.77 16 19 C 0.13 2.73 6.43 71.24 0.46 3.18 16 20 C -0.20 -4.47 6.14 24.59 0.15 -4.32 16 21 C -0.13 -2.54 10.05 21.22 0.21 -2.32 16 22 C -0.15 -2.51 10.18 21.22 0.22 -2.30 16 23 C -0.21 -3.43 11.23 66.72 0.75 -2.68 16 24 S 0.09 1.89 23.33 -56.49 -1.32 0.57 16 25 H 0.22 7.90 7.80 -4.42 -0.03 7.86 16 26 H 0.06 3.01 6.59 -2.38 -0.02 2.99 16 27 H 0.07 2.87 6.80 -2.39 -0.02 2.85 16 28 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 29 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 30 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 31 H 0.38 10.15 8.82 -74.06 -0.65 9.50 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -68.91 344.61 2.60 -66.31 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.40 Total: 21.43 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 6.21 Total: -18.37 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.51 Total: -82.97 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -3.21 Total: -34.31 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.57 kcal Total: -68.91 2.60 -66.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281237998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.641 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds