Wall clock time and date at job start Tue Mar 31 2020 07:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32564 * 1 3 3 C 1.50704 * 120.00383 * 2 1 4 4 N 1.46501 * 109.47103 * 94.99365 * 3 2 1 5 5 S 1.65600 * 119.99559 * 165.00188 * 4 3 2 6 6 O 1.42106 * 104.27505 * 181.07335 * 5 4 3 7 7 O 1.42099 * 104.27925 * 308.93177 * 5 4 3 8 8 C 1.81398 * 104.44932 * 65.00505 * 5 4 3 9 9 C 1.53004 * 109.47166 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.47305 * 179.97438 * 9 8 5 11 11 H 1.08002 * 119.99510 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99872 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00162 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99735 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47263 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47488 * 119.99964 * 14 12 10 17 17 H 1.48500 * 109.47076 * 239.99979 * 14 12 10 18 18 C 1.47817 * 120.00118 * 179.97438 * 2 1 3 19 19 C 1.39535 * 120.13929 * 65.00335 * 18 2 1 20 20 C 1.37972 * 119.85845 * 179.97438 * 19 18 2 21 21 C 1.38346 * 120.13996 * 359.97438 * 20 19 18 22 22 C 1.38346 * 120.28593 * 0.04440 * 21 20 19 23 23 C 1.37972 * 120.14034 * 359.95898 * 22 21 20 24 24 H 1.07998 * 119.99701 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99813 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47170 * 215.00030 * 3 2 1 27 27 H 1.09004 * 109.46680 * 334.99668 * 3 2 1 28 28 H 0.96993 * 120.00156 * 345.00789 * 4 3 2 29 29 H 1.09000 * 109.47127 * 299.99870 * 8 5 4 30 30 H 1.09005 * 109.47238 * 59.99918 * 8 5 4 31 31 H 1.09000 * 109.47347 * 300.00170 * 9 8 5 32 32 H 1.09005 * 109.46754 * 60.00057 * 9 8 5 33 33 H 0.97001 * 119.99987 * 180.02562 * 13 12 10 34 34 H 1.08002 * 120.06946 * 359.69988 * 19 18 2 35 35 H 1.08000 * 119.92912 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.85466 * 180.02562 * 21 20 19 37 37 H 1.07993 * 119.92695 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.07059 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 7 2.4276 1.6679 1.3760 5 16 3.5629 2.8392 1.6612 6 8 3.6547 2.9005 3.0780 7 8 4.6771 2.4471 0.8712 8 6 2.8204 4.3586 1.0051 9 6 3.7848 5.5282 1.2123 10 6 3.1683 6.7904 0.6666 11 1 2.1865 6.7613 0.2174 12 6 3.8575 7.9822 0.7409 13 7 5.0527 8.0176 1.2883 14 14 3.0929 9.5469 0.0652 15 1 1.7516 9.2410 -0.4939 16 1 2.9588 10.5441 1.1573 17 1 3.9607 10.0994 -1.0057 18 6 2.0648 -1.2801 0.0006 19 6 1.9735 -2.1423 -1.0927 20 6 2.6662 -3.3355 -1.0863 21 6 3.4506 -3.6775 0.0008 22 6 3.5450 -2.8272 1.0881 23 6 2.8571 -1.6312 1.0940 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.9899 1.1988 -0.5895 27 1 1.4543 2.0854 -0.4344 28 1 1.9933 1.2220 2.1199 29 1 2.6215 4.2354 -0.0595 30 1 1.8859 4.5617 1.5283 31 1 3.9834 5.6512 2.2769 32 1 4.7195 5.3254 0.6893 33 1 5.5374 8.8562 1.3409 34 1 1.3583 -1.8783 -1.9403 35 1 2.5961 -4.0039 -1.9317 36 1 3.9912 -4.6125 0.0008 37 1 4.1586 -3.1002 1.9338 38 1 2.9320 -0.9681 1.9432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286733524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:16 Heat of formation + Delta-G solvation = -42.654143 kcal Electronic energy + Delta-G solvation = -20776.974241 eV Core-core repulsion = 17518.432383 eV Total energy + Delta-G solvation = -3258.541858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.47589 -36.72774 -36.35991 -35.42162 -33.89585 -33.07451 -31.16811 -31.06716 -29.77778 -25.84238 -25.60581 -23.13657 -22.61180 -21.67291 -19.51252 -18.90250 -17.54710 -17.03255 -16.47744 -16.11405 -15.48262 -15.33682 -15.08151 -14.66990 -14.53560 -14.42960 -14.00380 -13.59060 -13.34565 -12.86870 -12.66898 -12.51416 -12.26115 -11.75625 -11.63385 -11.58190 -11.49195 -11.30314 -11.10068 -11.01083 -10.95878 -10.41049 -10.39012 -9.81224 -9.79042 -9.48278 -9.11362 -9.02060 -8.75617 -8.51178 -6.12987 -4.18544 0.74262 1.04258 1.24155 1.86733 3.24375 3.24924 3.32202 3.35515 3.59666 4.23395 4.36906 4.42549 4.58082 4.75766 4.78176 4.81440 4.94755 5.22321 5.25934 5.27581 5.34982 5.41031 5.49002 5.63666 5.66678 5.77323 5.85060 5.93022 6.10688 6.27133 6.33642 6.38387 6.47630 6.48746 6.81191 7.07780 7.29997 7.36071 7.80162 8.17029 8.85134 9.46323 10.98110 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.003213 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.135092 B = 8711.150970 C = 9126.228326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C 0.155 3.845 4 N -1.124 6.124 5 S 2.591 3.409 6 O -0.967 6.967 7 O -0.965 6.965 8 C -0.589 4.589 9 C 0.027 3.973 10 C -0.520 4.520 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.051 4.051 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.101 4.101 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.412 0.588 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 -21.227 -3.709 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.100 4.100 3 C 0.029 3.971 4 N -0.881 5.881 5 S 2.689 3.311 6 O -0.957 6.957 7 O -0.955 6.955 8 C -0.723 4.723 9 C -0.012 4.012 10 C -0.559 4.559 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.051 4.051 19 C -0.126 4.126 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.119 4.119 24 H 0.129 0.871 25 H 0.122 0.878 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.245 0.755 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.959 -21.198 -3.404 22.897 hybrid contribution -1.050 0.988 -0.342 1.482 sum -9.008 -20.209 -3.745 22.441 Atomic orbital electron populations 1.24323 0.94417 1.02631 0.97544 1.20477 0.94359 0.92679 1.02439 1.20251 1.00088 0.93422 0.83318 1.55879 1.62782 1.56826 1.12625 1.05607 0.74521 0.76354 0.74642 1.93555 1.85874 1.86840 1.29476 1.93546 1.49068 1.80979 1.71875 1.30446 1.12703 1.17530 1.11609 1.18973 0.92978 0.90429 0.98814 1.21041 1.03207 0.91903 1.39780 0.91990 1.25073 0.94910 0.99370 0.95184 1.69963 1.12110 1.26988 1.43760 0.86412 0.79279 0.82839 0.78740 1.19650 1.20802 1.20798 1.18916 0.97827 0.93710 0.94628 1.21261 0.99726 0.94035 0.97611 1.21070 0.97601 0.96870 0.98477 1.21210 0.99086 0.99695 0.93955 1.21134 0.99409 0.94502 0.98692 1.21314 0.95902 0.96576 0.98115 0.87116 0.87846 0.89489 0.90666 0.75481 0.86312 0.86072 0.94827 0.94798 0.92575 0.85883 0.86034 0.86181 0.85885 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 13.94 28.82 0.40 -0.80 16 2 C -0.10 -0.97 4.84 -102.61 -0.50 -1.47 16 3 C 0.16 1.75 6.27 -5.19 -0.03 1.72 16 4 N -1.12 -14.32 5.85 -11.65 -0.07 -14.39 16 5 S 2.59 45.72 5.46 -107.50 -0.59 45.13 16 6 O -0.97 -19.91 18.08 -57.54 -1.04 -20.95 16 7 O -0.96 -20.00 17.50 -57.54 -1.01 -21.01 16 8 C -0.59 -11.06 6.01 37.16 0.22 -10.84 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.05 -0.55 5.32 -105.01 -0.56 -1.10 16 19 C -0.11 -1.03 9.71 -39.20 -0.38 -1.42 16 20 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 21 C -0.12 -1.10 10.04 -39.50 -0.40 -1.50 16 22 C -0.12 -1.21 10.03 -39.64 -0.40 -1.60 16 23 C -0.10 -1.14 9.77 -39.20 -0.38 -1.52 16 24 H 0.11 0.76 8.01 -52.49 -0.42 0.34 16 25 H 0.10 0.73 8.05 -52.49 -0.42 0.31 16 26 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 27 H 0.08 0.70 8.00 -51.93 -0.42 0.29 16 28 H 0.41 4.50 8.57 -34.47 -0.30 4.20 16 29 H 0.12 1.97 8.14 -51.92 -0.42 1.54 16 30 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.36 7.99 -52.48 -0.42 0.95 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -35.23 345.70 -10.04 -45.27 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.30 Total: 2.93 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: -2.97 Total: -32.57 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.67 Total: -40.13 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -2.05 Total: -41.96 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 45.72 SS G_CDS: -0.59 Total: 45.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.23 -10.04 -45.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286733524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.619 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds