Wall clock time and date at job start Tue Mar 31 2020 07:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32564 * 1 3 3 C 1.50704 * 120.00383 * 2 1 4 4 N 1.46501 * 109.47103 * 94.99365 * 3 2 1 5 5 S 1.65600 * 119.99559 * 165.00188 * 4 3 2 6 6 O 1.42106 * 104.27505 * 181.07335 * 5 4 3 7 7 O 1.42099 * 104.27925 * 308.93177 * 5 4 3 8 8 C 1.81398 * 104.44932 * 65.00505 * 5 4 3 9 9 C 1.53004 * 109.47166 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.47305 * 179.97438 * 9 8 5 11 11 H 1.08002 * 119.99510 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99872 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00162 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99735 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47263 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47488 * 119.99964 * 14 12 10 17 17 H 1.48500 * 109.47076 * 239.99979 * 14 12 10 18 18 C 1.47817 * 120.00118 * 179.97438 * 2 1 3 19 19 C 1.39535 * 120.13929 * 65.00335 * 18 2 1 20 20 C 1.37972 * 119.85845 * 179.97438 * 19 18 2 21 21 C 1.38346 * 120.13996 * 359.97438 * 20 19 18 22 22 C 1.38346 * 120.28593 * 0.04440 * 21 20 19 23 23 C 1.37972 * 120.14034 * 359.95898 * 22 21 20 24 24 H 1.07998 * 119.99701 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99813 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47170 * 215.00030 * 3 2 1 27 27 H 1.09004 * 109.46680 * 334.99668 * 3 2 1 28 28 H 0.96993 * 120.00156 * 345.00789 * 4 3 2 29 29 H 1.09000 * 109.47127 * 299.99870 * 8 5 4 30 30 H 1.09005 * 109.47238 * 59.99918 * 8 5 4 31 31 H 1.09000 * 109.47347 * 300.00170 * 9 8 5 32 32 H 1.09005 * 109.46754 * 60.00057 * 9 8 5 33 33 H 0.97001 * 119.99987 * 180.02562 * 13 12 10 34 34 H 1.08002 * 120.06946 * 359.69988 * 19 18 2 35 35 H 1.08000 * 119.92912 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.85466 * 180.02562 * 21 20 19 37 37 H 1.07993 * 119.92695 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.07059 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 7 2.4276 1.6679 1.3760 5 16 3.5629 2.8392 1.6612 6 8 3.6547 2.9005 3.0780 7 8 4.6771 2.4471 0.8712 8 6 2.8204 4.3586 1.0051 9 6 3.7848 5.5282 1.2123 10 6 3.1683 6.7904 0.6666 11 1 2.1865 6.7613 0.2174 12 6 3.8575 7.9822 0.7409 13 7 5.0527 8.0176 1.2883 14 14 3.0929 9.5469 0.0652 15 1 1.7516 9.2410 -0.4939 16 1 2.9588 10.5441 1.1573 17 1 3.9607 10.0994 -1.0057 18 6 2.0648 -1.2801 0.0006 19 6 1.9735 -2.1423 -1.0927 20 6 2.6662 -3.3355 -1.0863 21 6 3.4506 -3.6775 0.0008 22 6 3.5450 -2.8272 1.0881 23 6 2.8571 -1.6312 1.0940 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.9899 1.1988 -0.5895 27 1 1.4543 2.0854 -0.4344 28 1 1.9933 1.2220 2.1199 29 1 2.6215 4.2354 -0.0595 30 1 1.8859 4.5617 1.5283 31 1 3.9834 5.6512 2.2769 32 1 4.7195 5.3254 0.6893 33 1 5.5374 8.8562 1.3409 34 1 1.3583 -1.8783 -1.9403 35 1 2.5961 -4.0039 -1.9317 36 1 3.9912 -4.6125 0.0008 37 1 4.1586 -3.1002 1.9338 38 1 2.9320 -0.9681 1.9432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286733524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:16 Heat of formation + Delta-G solvation = -66.891992 kcal Electronic energy + Delta-G solvation = -20778.025273 eV Core-core repulsion = 17518.432383 eV Total energy + Delta-G solvation = -3259.592890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18108 -38.17933 -37.35016 -36.98321 -35.88670 -33.97514 -33.11673 -31.77282 -30.48863 -27.58596 -26.72461 -23.84696 -23.60402 -23.30101 -20.42076 -20.14397 -19.08751 -18.35440 -17.75040 -17.20195 -17.03296 -16.53032 -16.33393 -15.83078 -15.78279 -15.28168 -15.07638 -14.67432 -14.47461 -14.27750 -13.75646 -13.61730 -13.56391 -13.22914 -13.19163 -13.09779 -12.94537 -12.76719 -12.53477 -12.24373 -12.09454 -11.99258 -11.75458 -11.73021 -11.17106 -10.65190 -10.55457 -10.29783 -9.83725 -9.46383 -8.25549 -6.39522 -0.68934 0.31065 0.51619 1.13954 1.41786 1.42317 1.55651 2.00003 2.38651 2.81527 2.87828 3.08165 3.28736 3.72008 3.84480 4.01752 4.10099 4.14621 4.15675 4.29655 4.43409 4.53562 4.61168 4.70203 4.77446 4.86936 4.88675 5.11635 5.16864 5.28371 5.29410 5.43855 5.56786 5.63142 5.69223 5.69764 5.76906 6.06482 6.11240 6.12701 6.74801 7.30827 8.87031 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.003213 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.135092 B = 8711.150970 C = 9126.228326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.147 3.853 4 N -1.104 6.104 5 S 2.618 3.382 6 O -1.000 7.000 7 O -0.999 6.999 8 C -0.586 4.586 9 C 0.018 3.982 10 C -0.537 4.537 11 H 0.078 0.922 12 C -0.006 4.006 13 N -0.935 5.935 14 Si 0.975 3.025 15 H -0.254 1.254 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.064 4.064 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.128 4.128 24 H 0.127 0.873 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.423 0.577 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.005 0.995 32 H 0.006 0.994 33 H 0.267 0.733 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 -21.895 -5.245 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.120 4.120 3 C 0.022 3.978 4 N -0.866 5.866 5 S 2.715 3.285 6 O -0.990 6.990 7 O -0.989 6.989 8 C -0.718 4.718 9 C -0.021 4.021 10 C -0.576 4.576 11 H 0.096 0.904 12 C -0.204 4.204 13 N -0.575 5.575 14 Si 0.798 3.202 15 H -0.177 1.177 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.064 4.064 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.146 4.146 24 H 0.145 0.855 25 H 0.133 0.867 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.259 0.741 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.623 -21.873 -4.935 24.812 hybrid contribution -0.268 1.072 0.121 1.112 sum -10.891 -20.800 -4.814 23.968 Atomic orbital electron populations 1.24567 0.93595 1.03984 0.94002 1.20306 0.94857 0.91483 1.05395 1.20499 1.00225 0.95348 0.81730 1.55378 1.61886 1.55089 1.14205 1.04510 0.74434 0.76351 0.73222 1.93501 1.86616 1.87447 1.31482 1.93502 1.51367 1.81551 1.72458 1.30322 1.11975 1.15559 1.13952 1.18840 0.93624 0.93026 0.96578 1.21563 1.03859 0.92766 1.39406 0.90386 1.26137 0.95331 1.03468 0.95464 1.70112 1.13904 1.28085 1.45411 0.85249 0.78992 0.77950 0.77961 1.17735 1.20488 1.20461 1.19116 0.98032 0.94447 0.94770 1.21544 1.00012 0.94148 0.97723 1.21435 0.96806 0.97013 0.99048 1.21522 0.99162 1.00318 0.93636 1.21377 0.99631 0.94578 0.99655 1.21456 0.97319 0.97275 0.98591 0.85463 0.86689 0.91079 0.87990 0.74072 0.83699 0.83612 0.97624 0.97562 0.92434 0.84193 0.83617 0.84085 0.85022 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 13.94 66.67 0.93 -0.62 16 2 C -0.12 -2.11 4.84 -18.48 -0.09 -2.20 16 3 C 0.15 3.06 6.27 85.63 0.54 3.60 16 4 N -1.10 -26.92 5.85 -190.78 -1.12 -28.03 16 5 S 2.62 92.84 5.46 -56.49 -0.31 92.54 16 6 O -1.00 -41.94 18.08 -127.65 -2.31 -44.25 16 7 O -1.00 -42.43 17.50 -127.65 -2.23 -44.66 16 8 C -0.59 -21.49 6.01 71.98 0.43 -21.05 16 9 C 0.02 0.95 4.98 29.85 0.15 1.10 16 10 C -0.54 -29.52 9.11 25.60 0.23 -29.28 16 11 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 12 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 13 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 14 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 15 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 18 C -0.06 -1.30 5.32 -20.12 -0.11 -1.41 16 19 C -0.12 -2.02 9.71 22.52 0.22 -1.80 16 20 C -0.13 -1.98 10.03 22.23 0.22 -1.75 16 21 C -0.13 -2.17 10.04 22.32 0.22 -1.94 16 22 C -0.13 -2.69 10.03 22.23 0.22 -2.46 16 23 C -0.13 -2.89 9.77 22.52 0.22 -2.67 16 24 H 0.13 1.20 8.01 -2.91 -0.02 1.18 16 25 H 0.11 1.22 8.05 -2.91 -0.02 1.19 16 26 H 0.07 1.72 7.69 -2.39 -0.02 1.70 16 27 H 0.10 1.58 8.00 -2.39 -0.02 1.56 16 28 H 0.42 8.74 8.57 -96.75 -0.83 7.91 16 29 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 30 H 0.15 4.60 8.14 -2.39 -0.02 4.58 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.12 2.63 7.99 -2.91 -0.02 2.61 16 Total: -1.00 -77.84 345.70 0.22 -77.62 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.22 Total: 18.83 kcal Atomic # 6 Polarization: -64.02 SS G_CDS: 3.66 Total: -60.36 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -0.83 Total: -84.80 kcal Atomic # 8 Polarization: -84.37 SS G_CDS: -4.54 Total: -88.91 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 92.84 SS G_CDS: -0.31 Total: 92.54 kcal Total: -77.84 0.22 -77.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286733524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.725 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds