Wall clock time and date at job start Tue Mar 31 2020 07:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34687 * 117.00082 * 2 1 4 4 O 1.21443 * 119.99527 * 0.02562 * 3 2 1 5 5 C 1.48044 * 120.00567 * 180.02562 * 3 2 1 6 6 C 1.39174 * 119.68363 * 180.02562 * 5 3 2 7 7 C 1.38800 * 119.22169 * 179.97438 * 6 5 3 8 8 C 1.38292 * 118.58217 * 359.97438 * 7 6 5 9 9 N 1.48019 * 120.35024 * 179.97438 * 8 7 6 10 10 O 1.21801 * 119.99782 * 5.92087 * 9 8 7 11 11 O 1.21797 * 119.99709 * 185.92887 * 9 8 7 12 12 C 1.39480 * 119.30002 * 359.97438 * 8 7 6 13 13 N 1.38981 * 119.63677 * 180.02562 * 12 8 7 14 14 C 1.46496 * 119.99963 * 174.49616 * 13 12 8 15 15 H 1.09004 * 109.47183 * 325.27698 * 14 13 12 16 16 C 1.52999 * 109.46895 * 85.27817 * 14 13 12 17 17 C 1.50702 * 109.47003 * 205.27665 * 14 13 12 18 18 H 1.07997 * 120.00001 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99597 * 180.02562 * 17 14 13 20 20 N 1.31508 * 120.00197 * 359.97438 * 19 17 14 21 21 Si 1.86808 * 119.99586 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47030 * 89.99909 * 21 19 17 23 23 H 1.48499 * 109.46938 * 210.00149 * 21 19 17 24 24 H 1.48499 * 109.46954 * 329.99893 * 21 19 17 25 25 N 1.32065 * 120.72805 * 0.27576 * 12 8 7 26 26 H 1.09004 * 109.46802 * 299.99567 * 1 2 3 27 27 H 1.08994 * 109.47478 * 59.99864 * 1 2 3 28 28 H 1.09007 * 109.46678 * 180.02562 * 1 2 3 29 29 H 1.07991 * 120.39184 * 359.97438 * 6 5 3 30 30 H 1.07994 * 120.70559 * 179.97438 * 7 6 5 31 31 H 0.97001 * 119.99363 * 354.77573 * 13 12 8 32 32 H 1.09004 * 109.47301 * 59.99954 * 16 14 13 33 33 H 1.09007 * 109.47033 * 179.97438 * 16 14 13 34 34 H 1.09005 * 109.47227 * 299.99583 * 16 14 13 35 35 H 0.97006 * 120.00026 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4020 2.2185 0.0005 5 6 3.5419 1.2777 -0.0006 6 6 4.1668 2.5212 0.0000 7 6 5.5534 2.5828 0.0000 8 6 6.2682 1.3990 0.0000 9 7 7.7483 1.4190 -0.0006 10 8 8.3431 2.4764 0.1077 11 8 8.3713 0.3781 -0.1096 12 6 5.5798 0.1859 0.0005 13 7 6.2912 -1.0080 0.0010 14 6 5.5813 -2.2836 0.1233 15 1 4.7178 -2.1577 0.7766 16 6 5.1123 -2.7408 -1.2594 17 6 6.5067 -3.3195 0.7078 18 1 7.5219 -3.0541 0.9630 19 6 6.0571 -4.6062 0.9166 20 7 4.8207 -4.9292 0.6062 21 14 7.2040 -5.8901 1.6417 22 1 7.0906 -5.8753 3.1223 23 1 6.8304 -7.2331 1.1300 24 1 8.6028 -5.5824 1.2493 25 7 4.2594 0.1593 -0.0044 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 3.5797 3.4277 0.0004 30 1 6.0631 3.5349 0.0000 31 1 7.2581 -0.9964 -0.0755 32 1 5.9757 -2.8666 -1.9127 33 1 4.5844 -3.6902 -1.1685 34 1 4.4429 -1.9915 -1.6822 35 1 4.5045 -5.8345 0.7528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287877739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:01 Heat of formation + Delta-G solvation = -50.406110 kcal Electronic energy + Delta-G solvation = -23790.429327 eV Core-core repulsion = 19985.258104 eV Total energy + Delta-G solvation = -3805.171223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44962 -42.05802 -40.95372 -38.29586 -37.71356 -37.35271 -34.94419 -34.39801 -32.47049 -30.07756 -29.42365 -27.77476 -27.34301 -25.16565 -24.54385 -22.79370 -22.33752 -20.45456 -20.17669 -19.65769 -18.75891 -18.72754 -18.43442 -17.62213 -17.58588 -17.10571 -16.63281 -15.84788 -15.41961 -15.32146 -14.93023 -14.47523 -14.39524 -14.35734 -13.86719 -13.13656 -13.08620 -13.01020 -12.83589 -12.69912 -12.42791 -12.39629 -12.26916 -12.20129 -12.11012 -11.86602 -11.68789 -11.59781 -11.11339 -10.99082 -10.57698 -9.13210 -8.22279 -6.38898 -1.55566 -0.17546 0.03218 0.25695 1.06632 1.36102 1.41781 1.42984 1.53618 1.99522 2.33926 2.40129 2.86809 3.07801 3.10491 3.52228 3.55440 3.86943 4.21944 4.33691 4.38990 4.45373 4.69055 4.70299 4.88246 4.93159 5.02596 5.06660 5.19571 5.31246 5.54370 5.70161 5.84406 6.03736 6.18467 6.39495 6.50461 6.64023 6.94646 7.31795 8.83161 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.006159 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.539178 B = 4545.197529 C = 6746.996874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.527 3.473 4 O -0.492 6.492 5 C 0.187 3.813 6 C -0.173 4.173 7 C 0.057 3.943 8 C -0.176 4.176 9 N 0.056 4.944 10 O -0.123 6.123 11 O -0.246 6.246 12 C 0.445 3.555 13 N -0.667 5.667 14 C 0.273 3.727 15 H 0.026 0.974 16 C -0.130 4.130 17 C -0.558 4.558 18 H 0.060 0.940 19 C 0.026 3.974 20 N -0.906 5.906 21 Si 0.965 3.035 22 H -0.276 1.276 23 H -0.277 1.277 24 H -0.268 1.268 25 N -0.508 5.508 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.201 0.799 30 H 0.211 0.789 31 H 0.420 0.580 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 14.334 -1.685 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C 0.369 3.631 4 O -0.379 6.379 5 C 0.043 3.957 6 C -0.198 4.198 7 C 0.030 3.970 8 C -0.271 4.271 9 N 0.564 4.436 10 O -0.351 6.351 11 O -0.432 6.432 12 C 0.199 3.801 13 N -0.302 5.302 14 C 0.170 3.830 15 H 0.044 0.956 16 C -0.189 4.189 17 C -0.596 4.596 18 H 0.078 0.922 19 C -0.175 4.175 20 N -0.544 5.544 21 Si 0.790 3.210 22 H -0.201 1.201 23 H -0.203 1.203 24 H -0.193 1.193 25 N -0.229 5.229 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.218 0.782 30 H 0.228 0.772 31 H 0.269 0.731 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.137 13.135 -1.703 15.046 hybrid contribution 1.374 -0.395 0.311 1.463 sum -5.764 12.740 -1.392 14.052 Atomic orbital electron populations 1.23722 0.73483 1.05927 1.03548 1.86770 1.25863 1.31292 1.82302 1.20630 0.87432 0.82130 0.72928 1.90841 1.65584 1.35999 1.45499 1.20601 0.91361 0.90065 0.93656 1.21983 0.93232 0.98324 1.06235 1.21670 0.93114 0.97302 0.84882 1.21842 0.79246 0.97110 1.28923 1.43367 1.03398 1.00043 0.96801 1.94432 1.70460 1.19419 1.50741 1.94292 1.67669 1.22251 1.58994 1.18336 0.88112 0.85947 0.87710 1.46877 1.11590 1.03709 1.67991 1.18632 0.91987 0.78291 0.94088 0.95629 1.21879 0.98783 1.01483 0.96749 1.21473 0.98716 0.95593 1.43845 0.92211 1.25615 0.96741 0.99918 0.95235 1.69996 1.16618 1.20534 1.47209 0.85443 0.79081 0.77989 0.78469 1.20141 1.20268 1.19287 1.67694 1.04001 1.31207 1.20044 0.90629 0.90462 0.85917 0.78244 0.77179 0.73081 0.95443 0.90784 0.95525 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.35 -10.33 10.38 -55.97 -0.58 -10.91 16 3 C 0.53 14.91 7.95 70.42 0.56 15.47 16 4 O -0.49 -13.29 16.10 20.02 0.32 -12.97 16 5 C 0.19 5.45 6.74 41.81 0.28 5.73 16 6 C -0.17 -3.56 9.63 22.63 0.22 -3.34 16 7 C 0.06 1.18 9.66 22.42 0.22 1.39 16 8 C -0.18 -5.45 6.89 36.69 0.25 -5.20 16 9 N 0.06 1.87 4.45 -45.72 -0.20 1.67 16 10 O -0.12 -3.66 18.52 18.88 0.35 -3.31 16 11 O -0.25 -9.51 15.73 18.89 0.30 -9.21 16 12 C 0.44 16.97 7.44 133.25 0.99 17.96 16 13 N -0.67 -29.53 5.10 -328.08 -1.67 -31.20 16 14 C 0.27 13.85 2.53 44.25 0.11 13.96 16 15 H 0.03 1.45 7.63 -2.39 -0.02 1.44 16 16 C -0.13 -6.40 9.28 71.98 0.67 -5.73 16 17 C -0.56 -30.27 8.73 25.60 0.22 -30.04 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 19 C 0.03 1.40 5.30 84.66 0.45 1.85 16 20 N -0.91 -50.14 11.32 21.45 0.24 -49.89 16 21 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 N -0.51 -18.90 8.95 -182.42 -1.63 -20.53 16 26 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.20 2.69 7.63 -2.92 -0.02 2.67 16 30 H 0.21 2.53 7.69 -2.91 -0.02 2.50 16 31 H 0.42 18.51 4.96 -98.69 -0.49 18.02 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 3.94 6.07 -2.38 -0.01 3.93 16 34 H 0.03 1.21 8.07 -2.38 -0.02 1.19 16 35 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -64.37 316.79 4.98 -59.39 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.66 Total: 18.73 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 5.17 Total: 13.76 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -3.27 Total: -99.96 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: 0.39 Total: -36.40 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -64.37 4.98 -59.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287877739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.986 kcal (2) G-P(sol) polarization free energy of solvation -64.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds