Wall clock time and date at job start Tue Mar 31 2020 07:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32559 * 1 3 3 C 1.47808 * 120.00471 * 2 1 4 4 C 1.39533 * 120.14631 * 180.02562 * 3 2 1 5 5 C 1.37972 * 119.85648 * 180.02562 * 4 3 2 6 6 C 1.38346 * 120.14436 * 0.02562 * 5 4 3 7 7 S 1.76201 * 119.85837 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.39915 * 336.46217 * 7 6 5 9 9 O 1.42093 * 106.40141 * 203.54525 * 7 6 5 10 10 N 1.65593 * 107.21631 * 90.00262 * 7 6 5 11 11 C 1.46498 * 120.00388 * 269.99756 * 10 7 6 12 12 C 1.46505 * 119.99939 * 90.00236 * 10 7 6 13 13 H 1.09002 * 109.47068 * 359.97438 * 12 10 7 14 14 C 1.52997 * 109.47212 * 239.99810 * 12 10 7 15 15 C 1.50699 * 109.47262 * 119.99723 * 12 10 7 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47319 * 60.00570 * 19 17 15 21 21 H 1.48503 * 109.46734 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 300.00384 * 19 17 15 23 23 C 1.38341 * 120.28274 * 0.26190 * 6 5 4 24 24 C 1.37976 * 120.14293 * 359.44454 * 23 6 5 25 25 H 1.08004 * 120.00525 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99957 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99957 * 180.02562 * 2 1 3 28 28 H 1.07996 * 120.07023 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.93115 * 179.97438 * 5 4 3 30 30 H 1.08992 * 109.47421 * 270.00337 * 11 10 7 31 31 H 1.09007 * 109.46720 * 30.00347 * 11 10 7 32 32 H 1.09003 * 109.47218 * 150.00128 * 11 10 7 33 33 H 1.08996 * 109.47853 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.47153 * 300.00008 * 14 12 10 35 35 H 1.08998 * 109.47533 * 59.99637 * 14 12 10 36 36 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 37 37 H 1.08000 * 119.92998 * 179.72602 * 23 6 5 38 38 H 1.08007 * 120.07217 * 180.25165 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2800 0.0000 4 6 3.4601 1.2834 -0.0005 5 6 4.1440 2.4817 0.0000 6 6 3.4493 3.6781 0.0016 7 16 4.3303 5.2041 0.0030 8 8 5.6135 4.9260 0.5466 9 8 3.4490 6.1758 0.5489 10 7 4.5747 5.6303 -1.5784 11 6 5.7815 5.1846 -2.2792 12 6 3.5841 6.4533 -2.2767 13 1 2.7618 6.6849 -1.5996 14 6 3.0469 5.6874 -3.4873 15 6 4.2306 7.7337 -2.7389 16 1 5.2751 7.9160 -2.5334 17 6 3.4890 8.6720 -3.4249 18 7 2.2172 8.4497 -3.6756 19 14 4.2906 10.2588 -3.9984 20 1 5.4105 9.9424 -4.9209 21 1 3.2864 11.0930 -4.7061 22 1 4.8121 11.0027 -2.8237 23 6 2.0659 3.6816 0.0081 24 6 1.3700 2.4901 0.0015 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8656 -0.9353 -0.0004 28 1 4.0035 0.3502 -0.0005 29 1 5.2239 2.4858 0.0000 30 1 6.5718 5.9237 -2.1480 31 1 6.1070 4.2282 -1.8698 32 1 5.5637 5.0701 -3.3410 33 1 2.3095 6.2994 -4.0067 34 1 3.8689 5.4555 -4.1645 35 1 2.5792 4.7613 -3.1531 36 1 1.6953 9.1100 -4.1579 37 1 1.5294 4.6189 0.0138 38 1 0.2900 2.4942 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289105749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:03 Heat of formation + Delta-G solvation = -24.089547 kcal Electronic energy + Delta-G solvation = -21921.212563 eV Core-core repulsion = 18663.475726 eV Total energy + Delta-G solvation = -3257.736837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.26858 -36.69018 -36.17419 -35.23281 -34.44381 -32.58307 -31.09674 -29.63322 -29.09320 -25.59975 -25.14168 -23.88619 -22.72640 -20.73358 -20.02827 -18.58397 -17.55985 -16.84803 -16.32027 -16.16478 -15.42553 -15.01193 -14.72562 -14.43029 -13.77895 -13.57942 -13.34772 -13.24108 -13.13243 -12.78981 -12.60655 -11.98638 -11.75519 -11.61375 -11.47667 -11.34789 -11.22452 -11.03420 -10.95873 -10.82967 -10.76444 -10.54414 -10.36091 -10.27139 -9.97510 -9.25957 -9.02048 -8.60058 -8.44660 -7.96144 -6.06831 -4.13394 0.46747 1.04050 1.35982 2.19722 3.31465 3.35688 3.38967 3.53952 3.84222 4.34165 4.41795 4.49047 4.58041 4.84038 4.88134 5.08600 5.24605 5.31587 5.36675 5.56632 5.60107 5.71070 5.94036 6.01575 6.10289 6.15103 6.21087 6.32242 6.35957 6.55761 6.62320 6.77403 6.80756 6.86082 7.01487 7.43359 7.62921 7.78524 8.03744 8.27210 8.88481 9.52254 10.98883 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.004771 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.560680 B = 5867.207375 C = 6462.331335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.126 4.126 3 C -0.016 4.016 4 C -0.136 4.136 5 C -0.022 4.022 6 C -0.672 4.672 7 S 2.682 3.318 8 O -0.975 6.975 9 O -0.952 6.952 10 N -0.980 5.980 11 C 0.108 3.892 12 C 0.267 3.733 13 H 0.061 0.939 14 C -0.150 4.150 15 C -0.520 4.520 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.012 4.012 24 C -0.138 4.138 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.034 0.966 35 H 0.010 0.990 36 H 0.264 0.736 37 H 0.143 0.857 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -15.607 4.362 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.016 4.016 4 C -0.154 4.154 5 C -0.041 4.041 6 C -0.756 4.756 7 S 2.772 3.228 8 O -0.965 6.965 9 O -0.943 6.943 10 N -0.820 5.820 11 C -0.038 4.038 12 C 0.164 3.836 13 H 0.079 0.921 14 C -0.209 4.209 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.031 4.031 24 C -0.157 4.157 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.951 -15.077 5.003 15.914 hybrid contribution -0.015 0.146 -0.754 0.768 sum -0.966 -14.931 4.249 15.554 Atomic orbital electron populations 1.24480 0.95714 1.02594 0.97676 1.21867 0.95336 0.95710 1.01494 1.19361 0.93569 0.93212 0.95458 1.21307 0.93346 0.98217 1.02557 1.20847 1.00098 0.91057 0.92133 1.31521 1.06686 1.21402 1.15992 1.02242 0.73485 0.73497 0.73594 1.93505 1.39447 1.86012 1.77538 1.93570 1.66960 1.56959 1.76776 1.57419 1.30144 1.63784 1.30659 1.21197 0.86481 0.97564 0.98586 1.18794 0.86242 0.87786 0.90766 0.92144 1.22139 1.01115 0.97581 1.00103 1.21286 0.97218 1.01376 1.36048 0.91878 1.24898 0.94856 0.98347 0.95704 1.69845 1.06700 1.35475 1.40918 0.86548 0.78943 0.82987 0.78875 1.20233 1.21232 1.20113 1.20940 0.92244 0.99284 0.90662 1.21402 1.00174 0.91754 1.02344 0.87529 0.87692 0.86137 0.85253 0.84398 0.92935 0.93178 0.90815 0.88770 0.94671 0.97052 0.92634 0.83898 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 14.15 28.82 0.41 -0.96 16 2 C -0.13 -1.20 9.91 -37.58 -0.37 -1.57 16 3 C -0.02 -0.19 5.87 -105.02 -0.62 -0.81 16 4 C -0.14 -1.68 9.79 -39.20 -0.38 -2.06 16 5 C -0.02 -0.32 9.50 -39.64 -0.38 -0.70 16 6 C -0.67 -11.27 5.98 -39.50 -0.24 -11.50 16 7 S 2.68 53.39 5.64 -107.50 -0.61 52.78 16 8 O -0.97 -20.00 16.34 -57.17 -0.93 -20.94 16 9 O -0.95 -21.96 15.82 -57.17 -0.90 -22.86 16 10 N -0.98 -20.34 3.06 -115.85 -0.35 -20.70 16 11 C 0.11 1.91 9.53 59.85 0.57 2.48 16 12 C 0.27 6.47 2.62 -69.08 -0.18 6.29 16 13 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 14 C -0.15 -3.39 8.95 37.16 0.33 -3.05 16 15 C -0.52 -13.87 8.37 -34.44 -0.29 -14.16 16 16 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C -0.01 -0.19 9.50 -39.64 -0.38 -0.57 16 24 C -0.14 -1.85 9.40 -39.19 -0.37 -2.22 16 25 H 0.11 0.65 8.06 -52.48 -0.42 0.23 16 26 H 0.10 0.84 6.04 -52.49 -0.32 0.52 16 27 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.14 1.78 7.60 -52.49 -0.40 1.38 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.73 7.79 -51.92 -0.40 0.33 16 32 H 0.07 1.26 6.43 -51.93 -0.33 0.92 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 34 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.14 2.28 7.60 -52.49 -0.40 1.89 16 38 H 0.13 1.42 6.17 -52.48 -0.32 1.10 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -31.59 329.60 -9.06 -40.65 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.85 Total: 1.24 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -1.98 Total: -27.21 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.27 Total: -44.59 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.84 Total: -43.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.61 Total: 52.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.59 -9.06 -40.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289105749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.559 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds