Wall clock time and date at job start Tue Mar 31 2020 07:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32559 * 1 3 3 C 1.47808 * 120.00471 * 2 1 4 4 C 1.39533 * 120.14631 * 180.02562 * 3 2 1 5 5 C 1.37972 * 119.85648 * 180.02562 * 4 3 2 6 6 C 1.38346 * 120.14436 * 0.02562 * 5 4 3 7 7 S 1.76201 * 119.85837 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.39915 * 336.46217 * 7 6 5 9 9 O 1.42093 * 106.40141 * 203.54525 * 7 6 5 10 10 N 1.65593 * 107.21631 * 90.00262 * 7 6 5 11 11 C 1.46498 * 120.00388 * 269.99756 * 10 7 6 12 12 C 1.46505 * 119.99939 * 90.00236 * 10 7 6 13 13 H 1.09002 * 109.47068 * 359.97438 * 12 10 7 14 14 C 1.52997 * 109.47212 * 239.99810 * 12 10 7 15 15 C 1.50699 * 109.47262 * 119.99723 * 12 10 7 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47319 * 60.00570 * 19 17 15 21 21 H 1.48503 * 109.46734 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 300.00384 * 19 17 15 23 23 C 1.38341 * 120.28274 * 0.26190 * 6 5 4 24 24 C 1.37976 * 120.14293 * 359.44454 * 23 6 5 25 25 H 1.08004 * 120.00525 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99957 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99957 * 180.02562 * 2 1 3 28 28 H 1.07996 * 120.07023 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.93115 * 179.97438 * 5 4 3 30 30 H 1.08992 * 109.47421 * 270.00337 * 11 10 7 31 31 H 1.09007 * 109.46720 * 30.00347 * 11 10 7 32 32 H 1.09003 * 109.47218 * 150.00128 * 11 10 7 33 33 H 1.08996 * 109.47853 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.47153 * 300.00008 * 14 12 10 35 35 H 1.08998 * 109.47533 * 59.99637 * 14 12 10 36 36 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 37 37 H 1.08000 * 119.92998 * 179.72602 * 23 6 5 38 38 H 1.08007 * 120.07217 * 180.25165 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2800 0.0000 4 6 3.4601 1.2834 -0.0005 5 6 4.1440 2.4817 0.0000 6 6 3.4493 3.6781 0.0016 7 16 4.3303 5.2041 0.0030 8 8 5.6135 4.9260 0.5466 9 8 3.4490 6.1758 0.5489 10 7 4.5747 5.6303 -1.5784 11 6 5.7815 5.1846 -2.2792 12 6 3.5841 6.4533 -2.2767 13 1 2.7618 6.6849 -1.5996 14 6 3.0469 5.6874 -3.4873 15 6 4.2306 7.7337 -2.7389 16 1 5.2751 7.9160 -2.5334 17 6 3.4890 8.6720 -3.4249 18 7 2.2172 8.4497 -3.6756 19 14 4.2906 10.2588 -3.9984 20 1 5.4105 9.9424 -4.9209 21 1 3.2864 11.0930 -4.7061 22 1 4.8121 11.0027 -2.8237 23 6 2.0659 3.6816 0.0081 24 6 1.3700 2.4901 0.0015 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8656 -0.9353 -0.0004 28 1 4.0035 0.3502 -0.0005 29 1 5.2239 2.4858 0.0000 30 1 6.5718 5.9237 -2.1480 31 1 6.1070 4.2282 -1.8698 32 1 5.5637 5.0701 -3.3410 33 1 2.3095 6.2994 -4.0067 34 1 3.8689 5.4555 -4.1645 35 1 2.5792 4.7613 -3.1531 36 1 1.6953 9.1100 -4.1579 37 1 1.5294 4.6189 0.0138 38 1 0.2900 2.4942 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289105749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:03 Heat of formation + Delta-G solvation = -44.027600 kcal Electronic energy + Delta-G solvation = -21922.077142 eV Core-core repulsion = 18663.475726 eV Total energy + Delta-G solvation = -3258.601416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30018 -38.34622 -37.90696 -36.89099 -35.29783 -34.52940 -32.15561 -30.92090 -30.58328 -27.29436 -27.00912 -24.88176 -23.80310 -22.53447 -20.88111 -19.99533 -19.02244 -18.57157 -18.11029 -17.31070 -16.90615 -16.49491 -15.96149 -15.76508 -15.25685 -14.85020 -14.63903 -14.63465 -14.33179 -14.18374 -13.72846 -13.62558 -13.37798 -13.17373 -13.14541 -12.98625 -12.78010 -12.59605 -12.46562 -12.28257 -12.17485 -11.99558 -11.92293 -11.67319 -11.60735 -11.15421 -10.49487 -10.09314 -9.68540 -9.46580 -8.10886 -6.24588 -0.65397 -0.39903 0.29762 1.36896 1.44135 1.46330 1.53257 2.13467 2.45177 2.67351 2.87592 3.17377 3.31315 3.69038 3.73425 3.89385 4.09744 4.26186 4.29436 4.38815 4.66824 4.67875 4.82416 4.84055 4.94763 4.97470 5.01906 5.06545 5.11584 5.13006 5.18519 5.24226 5.57547 5.61192 5.72597 5.74975 5.85924 5.87038 6.11863 6.29699 6.82232 7.44121 8.93315 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.004771 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.560680 B = 5867.207375 C = 6462.331335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C -0.007 4.007 4 C -0.133 4.133 5 C -0.029 4.029 6 C -0.684 4.684 7 S 2.689 3.311 8 O -0.987 6.987 9 O -0.998 6.998 10 N -0.989 5.989 11 C 0.100 3.900 12 C 0.271 3.729 13 H 0.028 0.972 14 C -0.136 4.136 15 C -0.540 4.540 16 H 0.058 0.942 17 C 0.019 3.981 18 N -0.914 5.914 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.279 1.279 23 C -0.034 4.034 24 C -0.146 4.146 25 H 0.133 0.867 26 H 0.103 0.897 27 H 0.146 0.854 28 H 0.168 0.832 29 H 0.151 0.849 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.127 0.873 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -18.542 4.006 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 C -0.007 4.007 4 C -0.151 4.151 5 C -0.048 4.048 6 C -0.774 4.774 7 S 2.784 3.216 8 O -0.977 6.977 9 O -0.988 6.988 10 N -0.828 5.828 11 C -0.046 4.046 12 C 0.167 3.833 13 H 0.046 0.954 14 C -0.195 4.195 15 C -0.579 4.579 16 H 0.076 0.924 17 C -0.181 4.181 18 N -0.553 5.553 19 Si 0.781 3.219 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.054 4.054 24 C -0.164 4.164 25 H 0.151 0.849 26 H 0.121 0.879 27 H 0.164 0.836 28 H 0.185 0.815 29 H 0.169 0.831 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.145 0.855 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.870 -17.971 4.640 18.581 hybrid contribution -0.140 0.868 -0.571 1.049 sum -1.010 -17.102 4.069 17.609 Atomic orbital electron populations 1.24816 0.95523 1.03850 0.94387 1.22003 0.95815 0.95072 1.03515 1.19805 0.94013 0.94091 0.92834 1.21728 0.93602 0.98759 1.01011 1.21115 1.00908 0.90920 0.91888 1.30809 1.06727 1.19969 1.19900 1.01581 0.73022 0.74049 0.72941 1.93472 1.40233 1.86419 1.77606 1.93504 1.67866 1.59791 1.77651 1.57280 1.30604 1.64276 1.30633 1.21422 0.85204 0.98934 0.98991 1.18461 0.86044 0.88042 0.90713 0.95446 1.21925 1.00748 0.97626 0.99234 1.21612 0.97182 1.02870 1.36250 0.92403 1.25631 0.95384 1.01188 0.95891 1.69964 1.07646 1.36329 1.41324 0.85649 0.78424 0.79430 0.78364 1.19075 1.20633 1.20473 1.20958 0.92203 0.99962 0.92257 1.21664 1.01398 0.91288 1.02085 0.84920 0.87902 0.83644 0.81479 0.83087 0.93472 0.89932 0.90233 0.91214 0.93665 0.95160 0.92583 0.85526 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 14.15 66.67 0.94 -0.86 16 2 C -0.15 -2.15 9.91 23.65 0.23 -1.91 16 3 C -0.01 -0.15 5.87 -20.12 -0.12 -0.27 16 4 C -0.13 -2.84 9.79 22.52 0.22 -2.62 16 5 C -0.03 -0.79 9.50 22.23 0.21 -0.58 16 6 C -0.68 -23.03 5.98 22.32 0.13 -22.89 16 7 S 2.69 110.64 5.64 -56.49 -0.32 110.32 16 8 O -0.99 -41.00 16.34 -128.00 -2.09 -43.09 16 9 O -1.00 -48.95 15.82 -128.00 -2.03 -50.98 16 10 N -0.99 -41.97 3.06 -520.44 -1.59 -43.56 16 11 C 0.10 3.48 9.53 127.77 1.22 4.70 16 12 C 0.27 13.61 2.62 44.24 0.12 13.73 16 13 H 0.03 1.55 6.91 -2.39 -0.02 1.54 16 14 C -0.14 -6.22 8.95 71.98 0.64 -5.58 16 15 C -0.54 -29.56 8.37 25.60 0.21 -29.35 16 16 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 17 C 0.02 1.04 5.30 84.65 0.45 1.49 16 18 N -0.91 -51.48 11.32 21.45 0.24 -51.24 16 19 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 C -0.03 -1.11 9.50 22.23 0.21 -0.90 16 24 C -0.15 -3.70 9.40 22.52 0.21 -3.49 16 25 H 0.13 0.95 8.06 -2.91 -0.02 0.93 16 26 H 0.10 1.28 6.04 -2.91 -0.02 1.27 16 27 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 28 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.15 3.58 7.60 -2.91 -0.02 3.56 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.30 7.79 -2.38 -0.02 2.28 16 32 H 0.08 2.66 6.43 -2.39 -0.02 2.64 16 33 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 34 H 0.04 1.92 6.66 -2.39 -0.02 1.91 16 35 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.13 4.38 7.60 -2.91 -0.02 4.36 16 38 H 0.15 3.05 6.17 -2.91 -0.02 3.03 16 Total: -1.00 -70.10 329.60 1.99 -68.11 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.06 Total: 13.49 kcal Atomic # 6 Polarization: -53.22 SS G_CDS: 4.69 Total: -48.53 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -1.35 Total: -94.80 kcal Atomic # 8 Polarization: -89.96 SS G_CDS: -4.12 Total: -94.07 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 110.64 SS G_CDS: -0.32 Total: 110.32 kcal Total: -70.10 1.99 -68.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289105749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.084 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds