Wall clock time and date at job start Tue Mar 31 2020 07:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32572 * 1 3 3 C 1.47805 * 120.00076 * 2 1 4 4 C 1.39538 * 120.14050 * 179.97438 * 3 2 1 5 5 C 1.37979 * 119.85507 * 180.02562 * 4 3 2 6 6 C 1.38347 * 120.14157 * 0.27879 * 5 4 3 7 7 S 1.76196 * 119.85491 * 179.72014 * 6 5 4 8 8 O 1.42100 * 106.40437 * 203.53906 * 7 6 5 9 9 O 1.42104 * 106.40527 * 336.46105 * 7 6 5 10 10 N 1.65603 * 107.21633 * 90.00135 * 7 6 5 11 11 C 1.46504 * 119.99876 * 269.99604 * 10 7 6 12 12 C 1.46495 * 119.99945 * 89.99951 * 10 7 6 13 13 H 1.08996 * 109.47346 * 0.02562 * 12 10 7 14 14 C 1.52999 * 109.47032 * 119.99892 * 12 10 7 15 15 C 1.50701 * 109.47185 * 239.99803 * 12 10 7 16 16 H 1.07999 * 119.99824 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00051 * 180.02562 * 15 12 10 18 18 N 1.31509 * 119.99795 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99841 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46735 * 90.00239 * 19 17 15 21 21 H 1.48496 * 109.47421 * 209.99825 * 19 17 15 22 22 H 1.48498 * 109.47584 * 330.00511 * 19 17 15 23 23 C 1.38343 * 120.28435 * 359.44577 * 6 5 4 24 24 C 1.37978 * 120.14370 * 0.55093 * 23 6 5 25 25 H 1.08004 * 119.99847 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99905 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99847 * 179.97438 * 2 1 3 28 28 H 1.08000 * 120.07257 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.92518 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46600 * 90.00224 * 11 10 7 31 31 H 1.08995 * 109.46830 * 209.99837 * 11 10 7 32 32 H 1.09000 * 109.47037 * 330.00355 * 11 10 7 33 33 H 1.08995 * 109.47424 * 299.99754 * 14 12 10 34 34 H 1.09000 * 109.47451 * 60.00388 * 14 12 10 35 35 H 1.09004 * 109.47117 * 179.97438 * 14 12 10 36 36 H 0.97002 * 119.99630 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.93009 * 180.25776 * 23 6 5 38 38 H 1.07995 * 120.07276 * 179.70103 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 3.4601 1.2834 0.0005 5 6 4.1441 2.4818 0.0011 6 6 3.4494 3.6781 0.0069 7 16 4.3304 5.2040 0.0150 8 8 3.4486 6.1737 0.5640 9 8 5.6132 4.9239 0.5585 10 7 4.5761 5.6365 -1.5646 11 6 5.7836 5.1935 -2.2660 12 6 3.5860 6.4622 -2.2604 13 1 2.7637 6.6919 -1.5828 14 6 4.2429 7.7640 -2.7239 15 6 3.0579 5.7125 -3.4562 16 1 3.4229 4.7200 -3.6757 17 6 2.1087 6.2936 -4.2701 18 7 1.6646 7.5023 -4.0031 19 14 1.4546 5.3645 -5.7528 20 1 0.2658 4.5692 -5.3534 21 1 1.0702 6.3310 -6.8126 22 1 2.5076 4.4546 -6.2709 23 6 2.0660 3.6816 0.0007 24 6 1.3701 2.4902 0.0001 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8657 -0.9354 0.0004 28 1 4.0036 0.3501 0.0014 29 1 5.2241 2.4857 0.0019 30 1 5.5922 4.2350 -2.7487 31 1 6.0573 5.9317 -3.0198 32 1 6.5994 5.0840 -1.5515 33 1 4.6249 8.3063 -1.8591 34 1 5.0654 7.5348 -3.4014 35 1 3.5063 8.3782 -3.2420 36 1 0.9971 7.9112 -4.5759 37 1 1.5294 4.6189 0.0010 38 1 0.2901 2.4942 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289105751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:06 Heat of formation + Delta-G solvation = -25.315869 kcal Electronic energy + Delta-G solvation = -22103.141645 eV Core-core repulsion = 18845.351631 eV Total energy + Delta-G solvation = -3257.790014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.13700 -36.71539 -36.17230 -35.27005 -34.33449 -32.61702 -30.96377 -29.52969 -29.07403 -25.59602 -25.14673 -23.77713 -22.60515 -20.73261 -19.94331 -18.56960 -17.44009 -16.82816 -16.45411 -16.00332 -15.45757 -14.97771 -14.61650 -14.43287 -13.68568 -13.56171 -13.30181 -13.20352 -13.03679 -12.76846 -12.52883 -11.95228 -11.79827 -11.55412 -11.48572 -11.36621 -11.15686 -11.00989 -10.91709 -10.85412 -10.66364 -10.45010 -10.43456 -10.25011 -10.01653 -9.26204 -8.87695 -8.49750 -8.47586 -7.95401 -6.10846 -4.18927 0.58602 1.08672 1.50277 2.30825 3.23308 3.30822 3.33212 3.58452 3.89427 4.34472 4.34992 4.59509 4.68466 4.90390 5.00448 5.17270 5.19778 5.43008 5.46660 5.67514 5.69341 5.84057 6.06367 6.13430 6.17980 6.21687 6.32145 6.34954 6.43533 6.63118 6.67692 6.82347 6.87463 6.99322 7.08332 7.44835 7.61887 7.76531 8.02749 8.24435 8.84654 9.47626 10.94163 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.007170 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.165797 B = 3904.342138 C = 5420.067618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.125 4.125 3 C -0.016 4.016 4 C -0.137 4.137 5 C -0.022 4.022 6 C -0.666 4.666 7 S 2.685 3.315 8 O -0.960 6.960 9 O -0.978 6.978 10 N -0.979 5.979 11 C 0.097 3.903 12 C 0.266 3.734 13 H 0.061 0.939 14 C -0.145 4.145 15 C -0.525 4.525 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.003 4.003 24 C -0.138 4.138 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.034 0.966 35 H 0.094 0.906 36 H 0.264 0.736 37 H 0.143 0.857 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -11.361 5.907 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.016 4.016 4 C -0.156 4.156 5 C -0.041 4.041 6 C -0.751 4.751 7 S 2.776 3.224 8 O -0.950 6.950 9 O -0.968 6.968 10 N -0.819 5.819 11 C -0.049 4.049 12 C 0.163 3.837 13 H 0.078 0.922 14 C -0.205 4.205 15 C -0.564 4.564 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.022 4.022 24 C -0.156 4.156 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.155 0.845 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.534 -10.767 6.565 12.704 hybrid contribution -0.851 -1.222 -1.368 2.022 sum 0.683 -11.988 5.197 13.084 Atomic orbital electron populations 1.24474 0.95739 1.02544 0.97863 1.21864 0.95318 0.95714 1.01380 1.19344 0.93569 0.93178 0.95513 1.21268 0.93328 0.98138 1.02857 1.20805 0.99962 0.91109 0.92247 1.31315 1.06635 1.20986 1.16203 1.02029 0.73265 0.73667 0.73476 1.93553 1.66966 1.57576 1.76914 1.93494 1.39613 1.86074 1.77654 1.57376 1.30128 1.64027 1.30418 1.21316 0.85687 1.00148 0.97750 1.18794 0.85145 0.87194 0.92564 0.92157 1.22069 1.00719 0.98983 0.98745 1.21392 1.22644 1.02082 1.10319 0.91950 1.24899 0.96202 0.94917 0.97720 1.69874 1.30052 1.13867 1.38747 0.86564 0.79247 0.79593 0.82404 1.20686 1.21137 1.19927 1.20901 0.92195 0.99260 0.89847 1.21381 1.00145 0.91780 1.02342 0.87684 0.87606 0.86205 0.85375 0.84525 0.93763 0.90308 0.91802 0.96659 0.94732 0.88741 0.92630 0.83921 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 14.15 28.83 0.41 -1.21 16 2 C -0.12 -1.35 9.91 -37.58 -0.37 -1.72 16 3 C -0.02 -0.22 5.87 -105.02 -0.62 -0.83 16 4 C -0.14 -1.88 9.79 -39.19 -0.38 -2.26 16 5 C -0.02 -0.34 9.50 -39.64 -0.38 -0.72 16 6 C -0.67 -11.93 5.98 -39.50 -0.24 -12.16 16 7 S 2.69 53.26 5.68 -107.50 -0.61 52.65 16 8 O -0.96 -21.53 15.84 -57.17 -0.91 -22.44 16 9 O -0.98 -19.61 15.87 -57.17 -0.91 -20.52 16 10 N -0.98 -20.25 3.06 -115.85 -0.35 -20.61 16 11 C 0.10 1.71 9.90 59.85 0.59 2.30 16 12 C 0.27 6.41 2.62 -69.08 -0.18 6.23 16 13 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 14 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 15 C -0.52 -13.44 8.37 -34.44 -0.29 -13.72 16 16 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 17 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 19 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.00 -0.05 9.50 -39.64 -0.38 -0.43 16 24 C -0.14 -2.08 9.40 -39.19 -0.37 -2.45 16 25 H 0.11 1.00 6.04 -52.48 -0.32 0.68 16 26 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.14 1.89 7.60 -52.49 -0.40 1.49 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.37 6.43 -51.93 -0.33 1.04 16 32 H 0.06 1.00 7.02 -51.93 -0.36 0.64 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 35 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.14 2.52 7.61 -52.49 -0.40 2.12 16 38 H 0.13 1.65 6.17 -52.49 -0.32 1.32 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -30.61 328.79 -8.99 -39.59 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.81 Total: 2.84 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -1.96 Total: -28.44 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.27 Total: -44.07 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.81 Total: -42.96 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 53.26 SS G_CDS: -0.61 Total: 52.65 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.61 -8.99 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289105751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.275 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds