Wall clock time and date at job start Tue Mar 31 2020 07:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32572 * 1 3 3 C 1.47805 * 120.00076 * 2 1 4 4 C 1.39538 * 120.14050 * 179.97438 * 3 2 1 5 5 C 1.37979 * 119.85507 * 180.02562 * 4 3 2 6 6 C 1.38347 * 120.14157 * 0.27879 * 5 4 3 7 7 S 1.76196 * 119.85491 * 179.72014 * 6 5 4 8 8 O 1.42100 * 106.40437 * 203.53906 * 7 6 5 9 9 O 1.42104 * 106.40527 * 336.46105 * 7 6 5 10 10 N 1.65603 * 107.21633 * 90.00135 * 7 6 5 11 11 C 1.46504 * 119.99876 * 269.99604 * 10 7 6 12 12 C 1.46495 * 119.99945 * 89.99951 * 10 7 6 13 13 H 1.08996 * 109.47346 * 0.02562 * 12 10 7 14 14 C 1.52999 * 109.47032 * 119.99892 * 12 10 7 15 15 C 1.50701 * 109.47185 * 239.99803 * 12 10 7 16 16 H 1.07999 * 119.99824 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00051 * 180.02562 * 15 12 10 18 18 N 1.31509 * 119.99795 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99841 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46735 * 90.00239 * 19 17 15 21 21 H 1.48496 * 109.47421 * 209.99825 * 19 17 15 22 22 H 1.48498 * 109.47584 * 330.00511 * 19 17 15 23 23 C 1.38343 * 120.28435 * 359.44577 * 6 5 4 24 24 C 1.37978 * 120.14370 * 0.55093 * 23 6 5 25 25 H 1.08004 * 119.99847 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99905 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99847 * 179.97438 * 2 1 3 28 28 H 1.08000 * 120.07257 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.92518 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46600 * 90.00224 * 11 10 7 31 31 H 1.08995 * 109.46830 * 209.99837 * 11 10 7 32 32 H 1.09000 * 109.47037 * 330.00355 * 11 10 7 33 33 H 1.08995 * 109.47424 * 299.99754 * 14 12 10 34 34 H 1.09000 * 109.47451 * 60.00388 * 14 12 10 35 35 H 1.09004 * 109.47117 * 179.97438 * 14 12 10 36 36 H 0.97002 * 119.99630 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.93009 * 180.25776 * 23 6 5 38 38 H 1.07995 * 120.07276 * 179.70103 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 3.4601 1.2834 0.0005 5 6 4.1441 2.4818 0.0011 6 6 3.4494 3.6781 0.0069 7 16 4.3304 5.2040 0.0150 8 8 3.4486 6.1737 0.5640 9 8 5.6132 4.9239 0.5585 10 7 4.5761 5.6365 -1.5646 11 6 5.7836 5.1935 -2.2660 12 6 3.5860 6.4622 -2.2604 13 1 2.7637 6.6919 -1.5828 14 6 4.2429 7.7640 -2.7239 15 6 3.0579 5.7125 -3.4562 16 1 3.4229 4.7200 -3.6757 17 6 2.1087 6.2936 -4.2701 18 7 1.6646 7.5023 -4.0031 19 14 1.4546 5.3645 -5.7528 20 1 0.2658 4.5692 -5.3534 21 1 1.0702 6.3310 -6.8126 22 1 2.5076 4.4546 -6.2709 23 6 2.0660 3.6816 0.0007 24 6 1.3701 2.4902 0.0001 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8657 -0.9354 0.0004 28 1 4.0036 0.3501 0.0014 29 1 5.2241 2.4857 0.0019 30 1 5.5922 4.2350 -2.7487 31 1 6.0573 5.9317 -3.0198 32 1 6.5994 5.0840 -1.5515 33 1 4.6249 8.3063 -1.8591 34 1 5.0654 7.5348 -3.4014 35 1 3.5063 8.3782 -3.2420 36 1 0.9971 7.9112 -4.5759 37 1 1.5294 4.6189 0.0010 38 1 0.2901 2.4942 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289105751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:05 Heat of formation + Delta-G solvation = -44.001386 kcal Electronic energy + Delta-G solvation = -22103.951910 eV Core-core repulsion = 18845.351631 eV Total energy + Delta-G solvation = -3258.600279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26942 -38.35451 -37.90706 -36.91213 -35.28762 -34.52256 -32.12843 -30.92558 -30.56211 -27.31036 -26.97952 -24.86281 -23.78558 -22.55471 -20.89350 -20.00753 -18.92238 -18.44998 -18.31045 -17.27614 -16.91635 -16.52391 -15.94687 -15.75338 -15.22925 -14.91510 -14.68615 -14.56489 -14.30371 -14.17850 -13.65716 -13.64719 -13.43914 -13.20718 -13.15640 -12.92582 -12.77990 -12.62460 -12.46463 -12.24747 -12.14418 -11.99152 -11.91770 -11.75675 -11.59046 -11.12342 -10.50172 -10.06302 -9.67911 -9.44808 -8.09714 -6.24112 -0.62590 -0.36616 0.32624 1.37310 1.42622 1.44694 1.53700 2.10609 2.44668 2.65706 2.86795 3.18462 3.32261 3.69652 3.74689 3.90726 4.14769 4.26896 4.29675 4.40490 4.69254 4.74421 4.80961 4.83262 4.96055 4.97659 5.03405 5.07339 5.14122 5.16937 5.17413 5.24221 5.56020 5.61403 5.73005 5.75772 5.85420 5.88089 6.09460 6.29129 6.84557 7.45300 8.94812 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.007170 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.165797 B = 3904.342138 C = 5420.067618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C -0.010 4.010 4 C -0.135 4.135 5 C -0.030 4.030 6 C -0.684 4.684 7 S 2.694 3.306 8 O -0.997 6.997 9 O -0.983 6.983 10 N -0.987 5.987 11 C 0.091 3.909 12 C 0.270 3.730 13 H 0.028 0.972 14 C -0.140 4.140 15 C -0.529 4.529 16 H 0.063 0.937 17 C 0.019 3.981 18 N -0.916 5.916 19 Si 0.953 3.047 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.267 1.267 23 C -0.029 4.029 24 C -0.150 4.150 25 H 0.100 0.900 26 H 0.134 0.866 27 H 0.147 0.853 28 H 0.168 0.832 29 H 0.153 0.847 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.022 0.978 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.264 0.736 37 H 0.124 0.876 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -14.754 5.387 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C -0.010 4.010 4 C -0.153 4.153 5 C -0.049 4.049 6 C -0.773 4.773 7 S 2.789 3.211 8 O -0.988 6.988 9 O -0.974 6.974 10 N -0.827 5.827 11 C -0.054 4.054 12 C 0.166 3.834 13 H 0.046 0.954 14 C -0.200 4.200 15 C -0.568 4.568 16 H 0.082 0.918 17 C -0.181 4.181 18 N -0.555 5.555 19 Si 0.779 3.221 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.049 4.049 24 C -0.169 4.169 25 H 0.118 0.882 26 H 0.152 0.848 27 H 0.165 0.835 28 H 0.185 0.815 29 H 0.170 0.830 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.674 -14.131 6.046 15.460 hybrid contribution -0.957 -0.299 -1.131 1.511 sum 0.717 -14.429 4.915 15.260 Atomic orbital electron populations 1.24806 0.95574 1.03759 0.94714 1.22016 0.95791 0.95089 1.03308 1.19795 0.94112 0.94017 0.93088 1.21721 0.93523 0.98844 1.01234 1.21112 1.00891 0.90963 0.91913 1.30845 1.06624 1.20383 1.19480 1.01430 0.72875 0.73941 0.72890 1.93498 1.67794 1.59825 1.77648 1.93470 1.39974 1.86318 1.77598 1.57258 1.30501 1.64421 1.30474 1.21529 0.85022 1.00634 0.98252 1.18469 0.85232 0.87959 0.91708 0.95422 1.21957 1.00405 0.98533 0.99060 1.21596 1.22596 1.02084 1.10529 0.91832 1.25625 0.96559 0.95637 1.00245 1.70003 1.30597 1.15173 1.39756 0.85629 0.78677 0.78456 0.79318 1.20521 1.20996 1.19102 1.20909 0.92437 0.99748 0.91769 1.21640 1.01260 0.91551 1.02401 0.88159 0.84797 0.83504 0.81479 0.82959 0.92554 0.90266 0.89848 0.95892 0.93402 0.90989 0.92673 0.85835 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 14.15 66.67 0.94 -1.36 16 2 C -0.14 -2.55 9.91 23.65 0.23 -2.31 16 3 C -0.01 -0.25 5.87 -20.12 -0.12 -0.36 16 4 C -0.13 -3.28 9.79 22.52 0.22 -3.06 16 5 C -0.03 -0.87 9.50 22.23 0.21 -0.66 16 6 C -0.68 -24.72 5.98 22.32 0.13 -24.59 16 7 S 2.69 109.68 5.68 -56.49 -0.32 109.36 16 8 O -1.00 -47.30 15.84 -128.00 -2.03 -49.33 16 9 O -0.98 -39.39 15.87 -128.00 -2.03 -41.42 16 10 N -0.99 -41.39 3.06 -520.45 -1.59 -42.98 16 11 C 0.09 3.12 9.90 127.77 1.27 4.38 16 12 C 0.27 13.43 2.62 44.25 0.12 13.55 16 13 H 0.03 1.56 6.91 -2.39 -0.02 1.54 16 14 C -0.14 -6.70 8.95 71.98 0.64 -6.06 16 15 C -0.53 -27.33 8.37 25.60 0.21 -27.12 16 16 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 17 C 0.02 1.01 5.30 84.66 0.45 1.46 16 18 N -0.92 -50.89 11.32 21.45 0.24 -50.65 16 19 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 C -0.03 -1.05 9.50 22.23 0.21 -0.84 16 24 C -0.15 -4.41 9.40 22.52 0.21 -4.20 16 25 H 0.10 1.61 6.04 -2.91 -0.02 1.59 16 26 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16 27 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.15 3.90 7.60 -2.91 -0.02 3.88 16 30 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.08 2.69 6.43 -2.39 -0.02 2.67 16 32 H 0.08 2.51 7.02 -2.39 -0.02 2.50 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 2.10 6.66 -2.39 -0.02 2.08 16 35 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 36 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 37 H 0.12 4.76 7.61 -2.91 -0.02 4.74 16 38 H 0.15 3.63 6.17 -2.91 -0.02 3.61 16 Total: -1.00 -66.80 328.79 2.09 -64.71 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.06 Total: 17.68 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 4.74 Total: -51.17 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -1.35 Total: -93.63 kcal Atomic # 8 Polarization: -86.69 SS G_CDS: -4.06 Total: -90.75 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 109.68 SS G_CDS: -0.32 Total: 109.36 kcal Total: -66.80 2.09 -64.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289105751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.710 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds