Wall clock time and date at job start Tue Mar 31 2020 07:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47129 * 2 1 4 4 N 1.46497 * 109.47260 * 239.99179 * 2 1 3 5 5 C 1.34775 * 119.99721 * 84.99984 * 4 2 1 6 6 O 1.21282 * 120.00112 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00156 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.47354 * 180.02562 * 7 5 4 9 9 C 1.76198 * 100.00085 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99859 * 359.97438 * 9 8 7 11 11 C 1.38796 * 119.99608 * 179.97438 * 9 8 7 12 12 N 1.31627 * 120.00612 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99573 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46896 * 60.00253 * 13 11 9 15 15 H 1.48496 * 109.47077 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47235 * 300.00133 * 13 11 9 17 17 C 1.53001 * 109.47103 * 119.99458 * 2 1 3 18 18 H 1.08999 * 109.47164 * 174.99895 * 17 2 1 19 19 O 1.42903 * 109.47171 * 54.99630 * 17 2 1 20 20 C 1.50707 * 109.47316 * 295.00314 * 17 2 1 21 21 C 1.38231 * 120.00284 * 84.72414 * 20 17 2 22 22 C 1.38234 * 120.00339 * 179.81128 * 21 20 17 23 23 C 1.38242 * 119.99550 * 0.39977 * 22 21 20 24 24 C 1.38236 * 120.00069 * 359.85298 * 23 22 21 25 25 C 1.38234 * 119.99895 * 359.96002 * 24 23 22 26 26 H 1.09006 * 109.47182 * 300.00121 * 1 2 3 27 27 H 1.08997 * 109.47046 * 60.00376 * 1 2 3 28 28 H 1.08996 * 109.47117 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00188 * 265.00462 * 4 2 1 30 30 H 1.09005 * 109.46824 * 299.99592 * 7 5 4 31 31 H 1.08996 * 109.47114 * 59.99984 * 7 5 4 32 32 H 0.96999 * 120.00467 * 179.97438 * 12 11 9 33 33 H 0.96700 * 114.00311 * 300.00378 * 19 17 2 34 34 H 1.08008 * 120.00078 * 359.97438 * 21 20 17 35 35 H 1.07989 * 120.00369 * 180.22807 * 22 21 20 36 36 H 1.08000 * 119.99884 * 179.83154 * 23 22 21 37 37 H 1.07998 * 120.00227 * 179.97438 * 24 23 22 38 38 H 1.08004 * 120.00055 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1471 -0.0185 -2.3571 6 8 1.8590 1.1583 -2.4115 7 6 2.6489 -0.7292 -3.5876 8 16 2.7106 0.4339 -4.9731 9 6 3.3137 -0.6314 -6.2403 10 1 3.5230 -1.6678 -6.0202 11 6 3.5198 -0.1386 -7.5214 12 7 3.2643 1.1245 -7.7898 13 14 4.1599 -1.2679 -8.8647 14 1 3.2092 -2.3916 -9.0612 15 1 4.2920 -0.5047 -10.1317 16 1 5.4865 -1.8051 -8.4693 17 6 2.0400 -0.7211 1.2493 18 1 3.1263 -0.7994 1.2057 19 8 1.4701 -2.0302 1.3097 20 6 1.6413 0.0572 2.4767 21 6 0.3906 -0.1270 3.0360 22 6 0.0263 0.5841 4.1640 23 6 0.9097 1.4856 4.7280 24 6 2.1584 1.6736 4.1656 25 6 2.5241 0.9597 3.0398 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.2490 -1.6319 -1.1524 30 1 3.6481 -1.1216 -3.3985 31 1 1.9760 -1.5510 -3.8324 32 1 3.4086 1.4690 -8.6850 33 1 0.5040 -2.0372 1.3506 34 1 -0.3010 -0.8285 2.5931 35 1 -0.9493 0.4374 4.6031 36 1 0.6241 2.0431 5.6077 37 1 2.8484 2.3782 4.6059 38 1 3.4999 1.1063 2.6006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290146101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:14 Heat of formation + Delta-G solvation = -68.215512 kcal Electronic energy + Delta-G solvation = -20610.256292 eV Core-core repulsion = 17350.606010 eV Total energy + Delta-G solvation = -3259.650282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43651 -39.07518 -37.43714 -34.42924 -32.42157 -32.15928 -31.29579 -30.53686 -28.40559 -26.76439 -25.46947 -22.95022 -22.57930 -20.89987 -20.22779 -18.16041 -17.88685 -16.74004 -16.37887 -15.99934 -15.65561 -15.24925 -14.93581 -14.79528 -14.40783 -14.05001 -14.04005 -13.73047 -13.27813 -13.00011 -12.78650 -12.55977 -12.43585 -12.01317 -11.96132 -11.56075 -11.42867 -11.22710 -11.03750 -11.03002 -10.77387 -10.44065 -9.81249 -9.40164 -9.22396 -9.16428 -9.05067 -8.82691 -8.23255 -6.49202 -6.20727 -3.91328 0.97271 1.07470 3.00496 3.09431 3.24351 3.27489 3.30382 3.43549 3.70678 4.10124 4.21517 4.36670 4.49908 4.53305 4.69023 4.77910 4.85473 5.11514 5.14290 5.15772 5.18130 5.23380 5.45820 5.54637 5.61505 5.64095 5.70764 5.89559 5.91061 6.09284 6.12647 6.16299 6.19001 6.24498 6.62209 6.66126 7.21530 7.60263 7.74314 8.36018 8.62483 9.24471 10.86651 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.002673 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.272752 B =10471.859451 C =10674.888842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 H 0.097 0.903 4 N -0.731 5.731 5 C 0.533 3.467 6 O -0.518 6.518 7 C -0.153 4.153 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.141 3.859 18 H 0.115 0.885 19 O -0.551 6.551 20 C -0.111 4.111 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.107 4.107 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.402 0.598 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.269 0.731 33 H 0.374 0.626 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -3.903 24.754 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 H 0.115 0.885 4 N -0.385 5.385 5 C 0.319 3.681 6 O -0.392 6.392 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.504 5.504 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.081 3.919 18 H 0.133 0.867 19 O -0.358 6.358 20 C -0.112 4.112 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.125 4.125 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.237 0.763 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.223 0.777 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.936 -1.959 24.486 25.055 hybrid contribution 0.249 -2.265 -0.732 2.393 sum -4.687 -4.224 23.754 24.577 Atomic orbital electron populations 1.22300 0.95340 1.02015 1.03571 1.21439 0.94746 0.98161 0.84349 0.88536 1.45997 1.69247 1.14222 1.09060 1.20340 0.76771 0.87215 0.83762 1.90698 1.48377 1.15769 1.84393 1.23533 1.03722 1.04841 0.98276 1.85376 1.86327 1.12888 0.98785 1.22831 1.51026 0.98155 0.96387 0.90966 1.24990 0.95101 0.95545 0.97945 1.70005 1.45504 1.13236 1.21606 0.86223 0.79329 0.80014 0.79931 1.19938 1.20821 1.19928 1.21130 0.98985 0.81893 0.89889 0.86716 1.86620 1.25725 1.26883 1.96583 1.20381 0.94958 0.98312 0.97515 1.20894 0.95646 0.99789 0.96354 1.21124 0.99719 0.96741 0.96097 1.21200 0.94132 0.98398 1.00044 1.21169 0.96720 0.99501 0.96142 1.21044 0.99561 0.95907 0.95984 0.91277 0.90974 0.92411 0.76310 0.89200 0.89203 0.92134 0.77652 0.86093 0.85915 0.86040 0.85827 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.38 37.16 0.31 -1.53 16 2 C 0.12 1.38 2.44 -67.93 -0.17 1.21 16 3 H 0.10 1.33 7.58 -51.93 -0.39 0.93 16 4 N -0.73 -9.83 5.06 -53.81 -0.27 -10.10 16 5 C 0.53 9.92 7.81 -10.98 -0.09 9.83 16 6 O -0.52 -11.66 15.52 5.56 0.09 -11.57 16 7 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 8 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 9 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 13 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 C 0.14 1.32 3.16 -27.88 -0.09 1.23 16 18 H 0.12 1.08 8.05 -51.93 -0.42 0.66 16 19 O -0.55 -5.00 12.77 -35.23 -0.45 -5.45 16 20 C -0.11 -1.00 4.73 -104.62 -0.49 -1.49 16 21 C -0.11 -0.86 7.38 -39.59 -0.29 -1.16 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.11 -0.94 9.68 -39.58 -0.38 -1.33 16 26 H 0.07 0.63 5.91 -51.93 -0.31 0.32 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.50 6.71 -51.93 -0.35 0.15 16 29 H 0.40 4.57 8.38 -40.82 -0.34 4.23 16 30 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 31 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.37 2.45 5.54 45.56 0.25 2.70 16 34 H 0.12 0.73 6.16 -52.48 -0.32 0.41 16 35 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -34.79 334.00 -8.46 -43.25 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.38 Total: 4.83 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -1.97 Total: -13.05 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.46 Total: -35.66 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.36 Total: -17.02 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.79 -8.46 -43.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290146101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.964 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds