Wall clock time and date at job start Tue Mar 31 2020 07:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47129 * 2 1 4 4 N 1.46497 * 109.47260 * 239.99179 * 2 1 3 5 5 C 1.34775 * 119.99721 * 84.99984 * 4 2 1 6 6 O 1.21282 * 120.00112 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00156 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.47354 * 180.02562 * 7 5 4 9 9 C 1.76198 * 100.00085 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99859 * 359.97438 * 9 8 7 11 11 C 1.38796 * 119.99608 * 179.97438 * 9 8 7 12 12 N 1.31627 * 120.00612 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99573 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46896 * 60.00253 * 13 11 9 15 15 H 1.48496 * 109.47077 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47235 * 300.00133 * 13 11 9 17 17 C 1.53001 * 109.47103 * 119.99458 * 2 1 3 18 18 H 1.08999 * 109.47164 * 174.99895 * 17 2 1 19 19 O 1.42903 * 109.47171 * 54.99630 * 17 2 1 20 20 C 1.50707 * 109.47316 * 295.00314 * 17 2 1 21 21 C 1.38231 * 120.00284 * 84.72414 * 20 17 2 22 22 C 1.38234 * 120.00339 * 179.81128 * 21 20 17 23 23 C 1.38242 * 119.99550 * 0.39977 * 22 21 20 24 24 C 1.38236 * 120.00069 * 359.85298 * 23 22 21 25 25 C 1.38234 * 119.99895 * 359.96002 * 24 23 22 26 26 H 1.09006 * 109.47182 * 300.00121 * 1 2 3 27 27 H 1.08997 * 109.47046 * 60.00376 * 1 2 3 28 28 H 1.08996 * 109.47117 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00188 * 265.00462 * 4 2 1 30 30 H 1.09005 * 109.46824 * 299.99592 * 7 5 4 31 31 H 1.08996 * 109.47114 * 59.99984 * 7 5 4 32 32 H 0.96999 * 120.00467 * 179.97438 * 12 11 9 33 33 H 0.96700 * 114.00311 * 300.00378 * 19 17 2 34 34 H 1.08008 * 120.00078 * 359.97438 * 21 20 17 35 35 H 1.07989 * 120.00369 * 180.22807 * 22 21 20 36 36 H 1.08000 * 119.99884 * 179.83154 * 23 22 21 37 37 H 1.07998 * 120.00227 * 179.97438 * 24 23 22 38 38 H 1.08004 * 120.00055 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1471 -0.0185 -2.3571 6 8 1.8590 1.1583 -2.4115 7 6 2.6489 -0.7292 -3.5876 8 16 2.7106 0.4339 -4.9731 9 6 3.3137 -0.6314 -6.2403 10 1 3.5230 -1.6678 -6.0202 11 6 3.5198 -0.1386 -7.5214 12 7 3.2643 1.1245 -7.7898 13 14 4.1599 -1.2679 -8.8647 14 1 3.2092 -2.3916 -9.0612 15 1 4.2920 -0.5047 -10.1317 16 1 5.4865 -1.8051 -8.4693 17 6 2.0400 -0.7211 1.2493 18 1 3.1263 -0.7994 1.2057 19 8 1.4701 -2.0302 1.3097 20 6 1.6413 0.0572 2.4767 21 6 0.3906 -0.1270 3.0360 22 6 0.0263 0.5841 4.1640 23 6 0.9097 1.4856 4.7280 24 6 2.1584 1.6736 4.1656 25 6 2.5241 0.9597 3.0398 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.2490 -1.6319 -1.1524 30 1 3.6481 -1.1216 -3.3985 31 1 1.9760 -1.5510 -3.8324 32 1 3.4086 1.4690 -8.6850 33 1 0.5040 -2.0372 1.3506 34 1 -0.3010 -0.8285 2.5931 35 1 -0.9493 0.4374 4.6031 36 1 0.6241 2.0431 5.6077 37 1 2.8484 2.3782 4.6059 38 1 3.4999 1.1063 2.6006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290146101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:13 Heat of formation + Delta-G solvation = -93.145601 kcal Electronic energy + Delta-G solvation = -20611.337342 eV Core-core repulsion = 17350.606010 eV Total energy + Delta-G solvation = -3260.731332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32006 -40.23079 -38.27803 -35.56592 -34.58684 -33.05083 -31.92953 -31.56259 -29.75249 -27.69422 -27.48878 -23.66530 -23.33177 -21.74392 -21.52785 -19.87857 -18.82905 -18.05804 -17.45030 -16.88122 -16.80554 -16.53060 -16.34351 -16.04998 -15.83128 -15.17007 -14.91862 -14.61329 -14.52075 -14.30066 -13.84912 -13.71684 -13.45975 -13.17359 -13.12285 -12.86761 -12.65671 -12.62815 -12.54602 -12.09535 -11.86583 -11.76348 -11.26949 -11.13112 -10.89381 -10.28692 -10.22340 -9.81466 -9.64191 -8.67115 -8.34731 -6.13000 0.35994 0.49081 1.26468 1.43958 1.46409 1.56385 1.60021 2.22027 2.28139 2.83746 2.99227 3.30728 3.40064 3.60862 3.70540 3.86871 4.00373 4.08664 4.14457 4.24985 4.30085 4.30146 4.49097 4.51310 4.61377 4.68545 4.81923 4.91090 5.03591 5.13125 5.21715 5.41398 5.44800 5.54990 5.61118 5.62227 6.08593 6.19496 6.49410 6.62844 7.06368 7.23624 8.74266 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.002673 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.272752 B =10471.859451 C =10674.888842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 H 0.072 0.928 4 N -0.705 5.705 5 C 0.535 3.465 6 O -0.564 6.564 7 C -0.130 4.130 8 S -0.150 6.150 9 C -0.547 4.547 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.912 5.912 13 Si 0.999 3.001 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.262 1.262 17 C 0.157 3.843 18 H 0.114 0.886 19 O -0.555 6.555 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.125 4.125 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.417 0.583 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.271 0.729 33 H 0.386 0.614 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 -6.161 26.121 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 H 0.091 0.909 4 N -0.359 5.359 5 C 0.321 3.679 6 O -0.442 6.442 7 C -0.281 4.281 8 S 0.077 5.923 9 C -0.695 4.695 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.187 1.187 17 C 0.097 3.903 18 H 0.131 0.869 19 O -0.364 6.364 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.143 4.143 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.254 0.746 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.238 0.762 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.218 -4.262 25.904 26.766 hybrid contribution 0.287 -1.570 -0.974 1.869 sum -4.931 -5.832 24.930 26.074 Atomic orbital electron populations 1.22244 0.94186 1.03401 1.02780 1.21581 0.95628 0.97152 0.84345 0.90943 1.45753 1.67448 1.14669 1.08073 1.20065 0.76639 0.86568 0.84589 1.90689 1.50711 1.17668 1.85135 1.23377 1.05507 1.03204 0.96013 1.85551 1.86726 1.17260 1.02751 1.23176 1.51002 0.98488 0.96856 0.89933 1.26135 0.95066 0.97224 1.00748 1.70174 1.46789 1.15502 1.22336 0.85001 0.79091 0.77737 0.76157 1.18641 1.20370 1.18652 1.20868 0.98829 0.81841 0.88751 0.86861 1.86611 1.26951 1.26326 1.96466 1.20383 0.95764 0.98843 0.97627 1.21168 0.95478 1.00110 0.96565 1.21462 1.00664 0.96312 0.95905 1.21537 0.93864 0.98367 1.00563 1.21427 0.97488 0.99736 0.96030 1.21241 0.99981 0.96418 0.96669 0.89614 0.94195 0.89913 0.74603 0.87299 0.87271 0.91973 0.76245 0.84182 0.83784 0.84087 0.84479 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 8.38 71.98 0.60 -2.73 16 2 C 0.12 2.65 2.44 44.99 0.11 2.76 16 3 H 0.07 2.03 7.58 -2.39 -0.02 2.02 16 4 N -0.71 -18.15 5.06 -442.54 -2.24 -20.39 16 5 C 0.54 19.91 7.81 87.66 0.68 20.60 16 6 O -0.56 -26.20 15.52 -3.04 -0.05 -26.25 16 7 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 8 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 9 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 10 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.74 5.49 84.86 0.47 1.21 16 12 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 13 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 14 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 15 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 17 C 0.16 2.69 3.16 29.85 0.09 2.79 16 18 H 0.11 1.98 8.05 -2.39 -0.02 1.96 16 19 O -0.55 -8.55 12.77 -148.98 -1.90 -10.45 16 20 C -0.13 -2.08 4.73 -19.86 -0.09 -2.17 16 21 C -0.12 -1.57 7.38 22.27 0.16 -1.40 16 22 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 23 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 25 C -0.12 -2.12 9.68 22.27 0.22 -1.91 16 26 H 0.09 1.42 5.91 -2.38 -0.01 1.41 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.20 6.71 -2.39 -0.02 1.19 16 29 H 0.42 8.49 8.38 -92.71 -0.78 7.71 16 30 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 31 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 32 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.39 3.76 5.54 -74.06 -0.41 3.34 16 34 H 0.14 1.25 6.16 -2.91 -0.02 1.23 16 35 H 0.14 1.12 8.06 -2.92 -0.02 1.09 16 36 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -77.55 334.00 0.86 -76.69 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.10 Total: 21.11 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.00 Total: -20.90 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -1.95 Total: -76.46 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.95 Total: -36.69 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -77.55 0.86 -76.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290146101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.457 kcal (2) G-P(sol) polarization free energy of solvation -77.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds