Wall clock time and date at job start Tue Mar 31 2020 07:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99941 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47035 * 59.99524 * 13 11 9 15 15 H 1.48499 * 109.47381 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46580 * 299.99884 * 13 11 9 17 17 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 18 18 H 1.08994 * 109.47535 * 64.99592 * 17 2 1 19 19 O 1.42907 * 109.46775 * 304.99893 * 17 2 1 20 20 C 1.50701 * 109.47109 * 185.00114 * 17 2 1 21 21 C 1.38236 * 119.99927 * 84.72341 * 20 17 2 22 22 C 1.38233 * 119.99880 * 179.80836 * 21 20 17 23 23 C 1.38238 * 119.99593 * 0.39827 * 22 21 20 24 24 C 1.38229 * 120.00261 * 359.85336 * 23 22 21 25 25 C 1.38230 * 120.00158 * 359.95749 * 24 23 22 26 26 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 28 28 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 29 29 H 0.97000 * 119.99484 * 94.99557 * 4 2 1 30 30 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 31 31 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 32 32 H 0.97002 * 120.00288 * 179.97438 * 12 11 9 33 33 H 0.96709 * 113.99746 * 299.99901 * 19 17 2 34 34 H 1.08004 * 120.00015 * 0.02562 * 21 20 17 35 35 H 1.08000 * 120.00194 * 180.23398 * 22 21 20 36 36 H 1.08010 * 119.99786 * 179.83872 * 23 22 21 37 37 H 1.08003 * 120.00113 * 179.97438 * 24 23 22 38 38 H 1.07998 * 120.00100 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6553 -0.7271 3.5861 8 16 2.7223 0.4375 4.9700 9 6 3.3309 -0.6263 6.2359 10 1 3.5396 -1.6629 6.0161 11 6 3.5431 -0.1319 7.5153 12 7 3.2902 1.1319 7.7829 13 14 4.1890 -1.2595 8.8572 14 1 5.5136 -1.7978 8.4563 15 1 4.3273 -0.4946 10.1225 16 1 3.2389 -2.3827 9.0597 17 6 2.0400 -0.7211 -1.2493 18 1 1.7516 -0.1583 -2.1370 19 8 1.4702 -2.0303 -1.3095 20 6 3.5419 -0.8293 -1.1889 21 6 4.1326 -1.8725 -0.5006 22 6 5.5103 -1.9739 -0.4485 23 6 6.2972 -1.0275 -1.0778 24 6 5.7065 0.0185 -1.7617 25 6 4.3289 0.1178 -1.8171 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.2490 -1.6317 1.1526 30 1 1.9840 -1.5491 3.8351 31 1 3.6536 -1.1193 3.3925 32 1 3.4381 1.4774 8.6771 33 1 1.6858 -2.5884 -0.5497 34 1 3.5178 -2.6102 -0.0064 35 1 5.9718 -2.7910 0.0861 36 1 7.3736 -1.1052 -1.0350 37 1 6.3213 0.7581 -2.2530 38 1 3.8674 0.9352 -2.3510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290146104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:18 Heat of formation + Delta-G solvation = -67.358943 kcal Electronic energy + Delta-G solvation = -21173.098203 eV Core-core repulsion = 17913.485065 eV Total energy + Delta-G solvation = -3259.613139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44083 -38.93064 -37.38812 -34.41811 -32.43624 -31.93387 -31.10582 -30.90566 -28.54249 -26.32802 -25.48983 -22.86848 -22.38583 -21.21443 -20.24130 -18.19511 -17.74447 -16.77022 -16.59468 -15.96131 -15.40617 -15.00720 -14.82144 -14.78801 -14.43342 -14.10387 -13.73795 -13.51000 -13.39705 -13.10611 -12.75503 -12.58532 -12.31754 -12.06868 -11.88825 -11.66533 -11.28889 -11.11693 -11.05139 -11.04299 -10.77722 -10.36862 -9.83205 -9.41987 -9.14323 -9.06856 -8.96824 -8.86814 -8.25035 -6.50735 -6.22276 -3.92951 1.12638 1.21611 2.98461 3.08379 3.22663 3.26403 3.29325 3.53920 3.66813 4.09067 4.19737 4.28361 4.58446 4.62315 4.77537 4.91897 5.08593 5.11091 5.12806 5.23234 5.28050 5.35335 5.47217 5.58558 5.69748 5.76176 5.81092 5.86872 5.97332 6.11482 6.22127 6.25300 6.30090 6.33955 6.58735 6.78670 7.19220 7.58095 7.62346 8.34060 8.58778 9.22885 10.85101 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.003911 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.932802 B = 7158.122665 C = 7975.837767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.097 0.903 4 N -0.733 5.733 5 C 0.536 3.464 6 O -0.515 6.515 7 C -0.153 4.153 8 S -0.058 6.058 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.142 3.858 18 H 0.120 0.880 19 O -0.548 6.548 20 C -0.112 4.112 21 C -0.109 4.109 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.110 4.110 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.390 0.610 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.269 0.731 33 H 0.371 0.629 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -6.811 -20.424 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 H 0.115 0.885 4 N -0.388 5.388 5 C 0.322 3.678 6 O -0.388 6.388 7 C -0.304 4.304 8 S 0.168 5.832 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.744 3.256 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.082 3.918 18 H 0.138 0.862 19 O -0.353 6.353 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.134 4.134 25 C -0.128 4.128 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.224 0.776 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.219 0.781 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.445 -4.452 -20.755 21.232 hybrid contribution 1.223 -2.689 1.391 3.265 sum 1.669 -7.141 -19.365 20.707 Atomic orbital electron populations 1.22082 0.94283 1.02692 1.02591 1.21573 0.94948 0.98271 0.84076 0.88507 1.46047 1.69620 1.13539 1.09643 1.20268 0.76686 0.87209 0.83612 1.90699 1.48219 1.15660 1.84263 1.23529 1.03523 1.04906 0.98448 1.85398 1.86102 1.12785 0.98886 1.22823 1.50970 0.98114 0.96557 0.91020 1.24981 0.95081 0.95512 0.97915 1.70008 1.45467 1.13159 1.21672 0.86234 0.79324 0.80030 0.79980 1.19947 1.20789 1.19930 1.21208 0.87637 0.84542 0.98414 0.86243 1.86645 1.75665 1.24610 1.48424 1.20430 0.96078 0.96217 0.98561 1.20779 0.95081 0.97896 0.98999 1.21131 0.93626 0.99207 0.99130 1.21191 0.99995 0.94858 0.97667 1.21144 0.94768 0.98197 0.99301 1.20947 0.93854 0.98407 0.99564 0.91846 0.91577 0.91830 0.77555 0.89305 0.89342 0.92121 0.78103 0.86641 0.85815 0.86013 0.85943 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.29 37.16 0.35 -1.42 16 2 C 0.12 1.34 2.47 -67.93 -0.17 1.17 16 3 H 0.10 1.30 7.58 -51.93 -0.39 0.91 16 4 N -0.73 -9.40 4.26 -53.81 -0.23 -9.63 16 5 C 0.54 9.81 7.81 -10.98 -0.09 9.72 16 6 O -0.51 -11.50 15.52 5.55 0.09 -11.41 16 7 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 9 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 10 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 11 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 13 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C 0.14 1.31 3.12 -27.88 -0.09 1.23 16 18 H 0.12 0.97 8.05 -51.93 -0.42 0.55 16 19 O -0.55 -5.00 12.26 -35.23 -0.43 -5.43 16 20 C -0.11 -1.14 4.78 -104.62 -0.50 -1.64 16 21 C -0.11 -1.07 8.17 -39.58 -0.32 -1.39 16 22 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 25 C -0.11 -1.09 9.68 -39.59 -0.38 -1.48 16 26 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.39 3.89 5.61 -40.82 -0.23 3.67 16 30 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.37 2.51 6.26 45.56 0.29 2.80 16 34 H 0.12 0.87 5.62 -52.48 -0.30 0.57 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -34.97 334.91 -8.37 -43.35 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.37 Total: 5.14 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.98 Total: -14.16 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.50 Total: -35.03 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.35 Total: -16.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.97 -8.37 -43.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290146104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.012 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds