Wall clock time and date at job start Tue Mar 31 2020 07:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46978 * 2 1 4 4 N 1.46496 * 109.46970 * 119.99270 * 2 1 3 5 5 C 1.34775 * 120.00844 * 274.99974 * 4 2 1 6 6 O 1.21284 * 119.99502 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00534 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47001 * 180.02562 * 7 5 4 9 9 C 1.76201 * 99.99709 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00076 * 0.02562 * 9 8 7 11 11 C 1.38796 * 119.99787 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00161 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00154 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47400 * 89.99552 * 13 11 9 15 15 H 1.48498 * 109.47282 * 209.99635 * 13 11 9 16 16 H 1.48505 * 109.46957 * 329.99502 * 13 11 9 17 17 C 1.52993 * 109.46831 * 239.99595 * 2 1 3 18 18 H 1.09003 * 109.47203 * 184.99872 * 17 2 1 19 19 O 1.42898 * 109.47517 * 304.99950 * 17 2 1 20 20 C 1.50702 * 109.47442 * 65.00365 * 17 2 1 21 21 C 1.38234 * 120.00271 * 99.99361 * 20 17 2 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 17 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 279.97488 * 20 17 2 26 26 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47046 * 300.00450 * 1 2 3 28 28 H 1.08999 * 109.47274 * 59.99954 * 1 2 3 29 29 H 0.97005 * 119.99603 * 95.00177 * 4 2 1 30 30 H 1.08994 * 109.47029 * 299.99898 * 7 5 4 31 31 H 1.08998 * 109.46681 * 60.00180 * 7 5 4 32 32 H 0.96999 * 120.00253 * 180.02562 * 12 11 9 33 33 H 0.96700 * 114.00054 * 59.99589 * 19 17 2 34 34 H 1.08001 * 119.99769 * 359.97438 * 21 20 17 35 35 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 37 37 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 38 38 H 1.07997 * 120.00489 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6904 1.1962 5 6 2.1471 -0.0181 2.3572 6 8 1.8582 1.1586 2.4117 7 6 2.6499 -0.7283 3.5876 8 16 2.7100 0.4347 4.9732 9 6 3.3132 -0.6305 6.2406 10 1 3.5234 -1.6667 6.0205 11 6 3.5192 -0.1375 7.5216 12 7 3.9703 -0.9331 8.4684 13 14 3.1563 1.6549 7.9023 14 1 1.7454 1.7912 8.3448 15 1 4.0613 2.1248 8.9818 16 1 3.3739 2.4738 6.6826 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.7996 -1.2056 19 8 1.4702 -2.0304 -1.3093 20 6 1.6414 0.0569 -2.4766 21 6 2.5588 0.8815 -3.1004 22 6 2.1933 1.5949 -4.2265 23 6 0.9104 1.4833 -4.7293 24 6 -0.0067 0.6579 -4.1061 25 6 0.3583 -0.0542 -2.9789 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.2490 -1.6317 1.1527 30 1 1.9778 -1.5505 3.8327 31 1 3.6493 -1.1200 3.3979 32 1 4.1139 -0.5887 9.3637 33 1 0.5041 -2.0374 -1.3502 34 1 3.5612 0.9684 -2.7078 35 1 2.9101 2.2389 -4.7142 36 1 0.6235 2.0440 -5.6066 37 1 -1.0091 0.5709 -4.4986 38 1 -0.3586 -0.6984 -2.4915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290146105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:21 Heat of formation + Delta-G solvation = -67.349195 kcal Electronic energy + Delta-G solvation = -20662.906637 eV Core-core repulsion = 17403.293921 eV Total energy + Delta-G solvation = -3259.612716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.50178 -39.17424 -37.49669 -34.50900 -32.43574 -32.22592 -31.37806 -30.59972 -28.52625 -26.83391 -25.60530 -22.98960 -22.63474 -20.97844 -20.33337 -18.19735 -17.92185 -16.78119 -16.47460 -16.05681 -15.74138 -15.31823 -15.05039 -14.93975 -14.45710 -14.12288 -13.95882 -13.77050 -13.39503 -13.04239 -12.82523 -12.79052 -12.53872 -12.09674 -12.02438 -11.64525 -11.47673 -11.26955 -11.25217 -11.00705 -10.66672 -10.42422 -9.85259 -9.52639 -9.25914 -9.22984 -9.00384 -8.90758 -8.49770 -6.91415 -6.28420 -4.00162 0.93102 1.03625 2.75022 2.96320 3.23876 3.33268 3.42672 3.50639 3.65133 4.07502 4.30802 4.33542 4.44767 4.48005 4.64533 4.73434 4.76402 4.80886 5.07114 5.10529 5.11507 5.16142 5.29515 5.43205 5.50248 5.57823 5.66704 5.77495 5.80617 6.02295 6.04443 6.08455 6.15235 6.20136 6.53418 6.61363 7.18000 7.63446 7.94717 8.42496 8.49332 9.17703 10.80829 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.036848 B = 0.002836 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.692911 B = 9869.248719 C =10139.494335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 H 0.097 0.903 4 N -0.728 5.728 5 C 0.532 3.468 6 O -0.520 6.520 7 C -0.124 4.124 8 S -0.142 6.142 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.881 5.881 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C 0.141 3.859 18 H 0.115 0.885 19 O -0.551 6.551 20 C -0.112 4.112 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.109 4.109 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.404 0.596 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.271 0.729 33 H 0.374 0.626 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 0.781 -26.877 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.115 0.885 4 N -0.383 5.383 5 C 0.318 3.682 6 O -0.395 6.395 7 C -0.274 4.274 8 S 0.084 5.916 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.114 4.114 12 N -0.517 5.517 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.159 1.159 17 C 0.081 3.919 18 H 0.133 0.867 19 O -0.357 6.357 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.127 4.127 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.239 0.761 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.549 2.545 -26.557 27.471 hybrid contribution -0.226 -0.952 0.325 1.031 sum -6.775 1.592 -26.232 27.140 Atomic orbital electron populations 1.22351 0.95313 1.02116 1.03653 1.21451 0.94774 0.98160 0.84320 0.88519 1.45958 1.69028 1.14312 1.08998 1.20312 0.76851 0.87204 0.83849 1.90695 1.48572 1.15773 1.84439 1.23278 1.04545 1.03437 0.96170 1.84772 1.87169 1.16573 1.03090 1.22321 1.50518 0.98736 0.95275 0.89367 1.24719 0.93382 0.98289 0.94962 1.69941 1.43468 1.35790 1.02513 0.86730 0.79291 0.85245 0.80542 1.19231 1.19957 1.15929 1.21122 0.99023 0.81927 0.89808 0.86718 1.86627 1.25731 1.26794 1.96574 1.20371 0.94615 0.98754 0.97528 1.21049 0.99436 0.96273 0.95645 1.21171 0.96601 0.99406 0.96408 1.21204 0.93750 0.98739 1.00002 1.21134 0.99688 0.97078 0.95805 1.20940 0.95514 0.99735 0.96554 0.92307 0.91020 0.91066 0.76132 0.88471 0.88423 0.91948 0.77645 0.85680 0.85823 0.86017 0.85883 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.23 37.16 0.31 -1.44 16 2 C 0.12 1.30 2.44 -67.93 -0.17 1.13 16 3 H 0.10 1.26 7.58 -51.93 -0.39 0.87 16 4 N -0.73 -9.26 5.06 -53.81 -0.27 -9.53 16 5 C 0.53 9.35 7.81 -10.99 -0.09 9.27 16 6 O -0.52 -11.05 15.53 5.55 0.09 -10.97 16 7 C -0.12 -2.40 6.16 36.00 0.22 -2.17 16 8 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 9 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 10 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 11 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 12 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 13 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 14 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 17 C 0.14 1.25 3.18 -27.89 -0.09 1.16 16 18 H 0.12 1.02 8.00 -51.93 -0.42 0.61 16 19 O -0.55 -4.80 12.82 -35.23 -0.45 -5.25 16 20 C -0.11 -0.96 4.82 -104.62 -0.50 -1.46 16 21 C -0.11 -0.89 9.67 -39.59 -0.38 -1.27 16 22 C -0.12 -0.90 10.05 -39.59 -0.40 -1.29 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 25 C -0.11 -0.83 7.30 -39.58 -0.29 -1.12 16 26 H 0.06 0.47 6.72 -51.93 -0.35 0.12 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.60 5.57 -51.93 -0.29 0.31 16 29 H 0.40 4.33 8.38 -40.82 -0.34 3.99 16 30 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 31 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 32 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.37 2.31 5.66 45.56 0.26 2.57 16 34 H 0.13 0.91 8.04 -52.49 -0.42 0.48 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.12 0.70 5.87 -52.49 -0.31 0.39 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -34.49 330.65 -7.93 -42.43 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.38 Total: 4.44 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.97 Total: -11.74 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.50 Total: -35.42 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.37 Total: -16.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.49 -7.93 -42.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290146105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.924 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds