Wall clock time and date at job start Tue Mar 31 2020 07:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46978 * 2 1 4 4 N 1.46496 * 109.46970 * 119.99270 * 2 1 3 5 5 C 1.34775 * 120.00844 * 274.99974 * 4 2 1 6 6 O 1.21284 * 119.99502 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00534 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47001 * 180.02562 * 7 5 4 9 9 C 1.76201 * 99.99709 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00076 * 0.02562 * 9 8 7 11 11 C 1.38796 * 119.99787 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00161 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00154 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47400 * 89.99552 * 13 11 9 15 15 H 1.48498 * 109.47282 * 209.99635 * 13 11 9 16 16 H 1.48505 * 109.46957 * 329.99502 * 13 11 9 17 17 C 1.52993 * 109.46831 * 239.99595 * 2 1 3 18 18 H 1.09003 * 109.47203 * 184.99872 * 17 2 1 19 19 O 1.42898 * 109.47517 * 304.99950 * 17 2 1 20 20 C 1.50702 * 109.47442 * 65.00365 * 17 2 1 21 21 C 1.38234 * 120.00271 * 99.99361 * 20 17 2 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 17 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 279.97488 * 20 17 2 26 26 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47046 * 300.00450 * 1 2 3 28 28 H 1.08999 * 109.47274 * 59.99954 * 1 2 3 29 29 H 0.97005 * 119.99603 * 95.00177 * 4 2 1 30 30 H 1.08994 * 109.47029 * 299.99898 * 7 5 4 31 31 H 1.08998 * 109.46681 * 60.00180 * 7 5 4 32 32 H 0.96999 * 120.00253 * 180.02562 * 12 11 9 33 33 H 0.96700 * 114.00054 * 59.99589 * 19 17 2 34 34 H 1.08001 * 119.99769 * 359.97438 * 21 20 17 35 35 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 37 37 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 38 38 H 1.07997 * 120.00489 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6904 1.1962 5 6 2.1471 -0.0181 2.3572 6 8 1.8582 1.1586 2.4117 7 6 2.6499 -0.7283 3.5876 8 16 2.7100 0.4347 4.9732 9 6 3.3132 -0.6305 6.2406 10 1 3.5234 -1.6667 6.0205 11 6 3.5192 -0.1375 7.5216 12 7 3.9703 -0.9331 8.4684 13 14 3.1563 1.6549 7.9023 14 1 1.7454 1.7912 8.3448 15 1 4.0613 2.1248 8.9818 16 1 3.3739 2.4738 6.6826 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.7996 -1.2056 19 8 1.4702 -2.0304 -1.3093 20 6 1.6414 0.0569 -2.4766 21 6 2.5588 0.8815 -3.1004 22 6 2.1933 1.5949 -4.2265 23 6 0.9104 1.4833 -4.7293 24 6 -0.0067 0.6579 -4.1061 25 6 0.3583 -0.0542 -2.9789 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.2490 -1.6317 1.1527 30 1 1.9778 -1.5505 3.8327 31 1 3.6493 -1.1200 3.3979 32 1 4.1139 -0.5887 9.3637 33 1 0.5041 -2.0374 -1.3502 34 1 3.5612 0.9684 -2.7078 35 1 2.9101 2.2389 -4.7142 36 1 0.6235 2.0440 -5.6066 37 1 -1.0091 0.5709 -4.4986 38 1 -0.3586 -0.6984 -2.4915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290146105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:20 Heat of formation + Delta-G solvation = -92.157875 kcal Electronic energy + Delta-G solvation = -20663.982422 eV Core-core repulsion = 17403.293921 eV Total energy + Delta-G solvation = -3260.688501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34532 -40.25908 -38.28542 -35.58016 -34.67568 -33.07680 -31.97540 -31.57163 -29.78086 -27.86464 -27.53775 -23.66996 -23.33956 -21.77941 -21.54867 -19.93454 -18.82053 -18.10817 -17.47084 -17.10322 -16.83031 -16.53126 -16.36627 -16.07372 -15.75103 -15.14380 -15.01150 -14.86782 -14.61568 -14.34291 -13.89953 -13.75129 -13.47703 -13.34824 -13.13494 -13.01327 -12.66709 -12.64575 -12.54835 -12.10074 -11.87734 -11.85338 -11.27404 -11.17574 -10.93018 -10.54481 -10.24353 -9.81362 -9.65383 -9.00146 -8.51912 -6.22827 0.35427 0.48762 0.98366 1.31020 1.46254 1.54764 1.55288 2.17793 2.25161 2.70135 2.83890 2.86195 3.40967 3.59685 3.67368 3.85632 3.92869 4.08430 4.14122 4.23227 4.25021 4.29594 4.46250 4.49580 4.61129 4.68809 4.81647 4.90547 5.03311 5.12931 5.22191 5.42287 5.54552 5.60869 5.62025 5.70433 6.08321 6.11222 6.45170 6.63011 6.93130 7.17993 8.60547 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.036848 B = 0.002836 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.692911 B = 9869.248719 C =10139.494335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 H 0.075 0.925 4 N -0.705 5.705 5 C 0.537 3.463 6 O -0.561 6.561 7 C -0.112 4.112 8 S -0.174 6.174 9 C -0.529 4.529 10 H 0.062 0.938 11 C 0.045 3.955 12 N -0.917 5.917 13 Si 0.915 3.085 14 H -0.262 1.262 15 H -0.259 1.259 16 H -0.237 1.237 17 C 0.156 3.844 18 H 0.114 0.886 19 O -0.556 6.556 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.116 4.116 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.417 0.583 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.277 0.723 33 H 0.386 0.614 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 0.878 -28.904 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 H 0.093 0.907 4 N -0.359 5.359 5 C 0.323 3.677 6 O -0.439 6.439 7 C -0.263 4.263 8 S 0.052 5.948 9 C -0.677 4.677 10 H 0.080 0.920 11 C -0.161 4.161 12 N -0.555 5.555 13 Si 0.737 3.263 14 H -0.187 1.187 15 H -0.183 1.183 16 H -0.161 1.161 17 C 0.096 3.904 18 H 0.131 0.869 19 O -0.364 6.364 20 C -0.127 4.127 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.134 4.134 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.254 0.746 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.551 2.596 -28.621 29.714 hybrid contribution 0.061 -1.091 0.778 1.341 sum -7.490 1.505 -27.843 28.873 Atomic orbital electron populations 1.22304 0.94122 1.03435 1.03002 1.21591 0.95678 0.97209 0.84194 0.90660 1.45749 1.67270 1.14745 1.08094 1.19951 0.76749 0.86564 0.84475 1.90687 1.50758 1.17381 1.85088 1.23273 1.06151 1.02276 0.94559 1.84684 1.86954 1.18394 1.04731 1.22465 1.50306 0.98207 0.96692 0.91990 1.25580 0.93251 1.02328 0.94917 1.70018 1.44563 1.37748 1.03187 0.85854 0.79558 0.80326 0.80548 1.18670 1.18327 1.16061 1.20883 0.98869 0.81839 0.88803 0.86876 1.86618 1.26947 1.26387 1.96472 1.20380 0.95354 0.99318 0.97626 1.21255 0.99879 0.96734 0.96280 1.21432 0.97381 0.99572 0.96331 1.21537 0.93562 0.98677 1.00539 1.21465 1.00703 0.96653 0.95609 1.21205 0.95419 0.99962 0.96832 0.89999 0.93950 0.89411 0.74567 0.86913 0.86901 0.91355 0.76259 0.85362 0.84446 0.84128 0.83846 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 8.23 71.98 0.59 -2.47 16 2 C 0.12 2.43 2.44 44.99 0.11 2.54 16 3 H 0.08 1.94 7.58 -2.39 -0.02 1.92 16 4 N -0.70 -16.79 5.06 -442.55 -2.24 -19.03 16 5 C 0.54 18.41 7.81 87.66 0.68 19.09 16 6 O -0.56 -23.80 15.53 -3.04 -0.05 -23.84 16 7 C -0.11 -4.23 6.16 71.24 0.44 -3.79 16 8 S -0.17 -8.83 18.55 -56.49 -1.05 -9.88 16 9 C -0.53 -30.98 10.04 67.95 0.68 -30.29 16 10 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 11 C 0.04 2.63 5.50 84.86 0.47 3.10 16 12 N -0.92 -56.13 13.97 21.65 0.30 -55.83 16 13 Si 0.92 45.20 27.74 68.60 1.90 47.11 16 14 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16 15 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 17 C 0.16 2.49 3.18 29.85 0.09 2.59 16 18 H 0.11 1.85 8.00 -2.39 -0.02 1.83 16 19 O -0.56 -8.19 12.82 -148.98 -1.91 -10.10 16 20 C -0.13 -1.95 4.82 -19.87 -0.10 -2.05 16 21 C -0.12 -1.95 9.67 22.27 0.22 -1.73 16 22 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 23 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 24 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 25 C -0.12 -1.48 7.30 22.27 0.16 -1.32 16 26 H 0.08 1.07 6.72 -2.39 -0.02 1.06 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.29 5.57 -2.39 -0.01 1.28 16 29 H 0.42 7.94 8.38 -92.70 -0.78 7.16 16 30 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 31 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 32 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.39 3.51 5.66 -74.06 -0.42 3.09 16 34 H 0.13 1.80 8.04 -2.91 -0.02 1.78 16 35 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.14 1.15 5.87 -2.91 -0.02 1.13 16 Total: -1.00 -74.84 330.65 0.84 -73.99 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.14 Total: 16.04 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 4.02 Total: -18.46 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.94 Total: -74.85 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.96 Total: -33.95 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -74.84 0.84 -73.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290146105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.163 kcal (2) G-P(sol) polarization free energy of solvation -74.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds