Wall clock time and date at job start Tue Mar 31 2020 07:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 O 1.21453 * 119.99684 * 0.02562 * 5 4 2 7 7 C 1.41225 * 120.00121 * 180.02562 * 5 4 2 8 8 C 1.37189 * 125.48237 * 179.97438 * 7 5 4 9 9 C 1.37207 * 113.24148 * 180.02562 * 8 7 5 10 10 C 1.34016 * 115.14862 * 0.02562 * 9 8 7 11 11 S 1.70616 * 111.00238 * 359.72370 * 10 9 8 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47398 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99463 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31524 * 120.00004 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00395 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46636 * 59.99870 * 21 19 17 23 23 H 1.48498 * 109.47594 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47239 * 300.00311 * 21 19 17 25 25 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 26 26 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 28 28 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 29 29 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 30 30 H 1.07995 * 123.37855 * 359.96894 * 8 7 5 31 31 H 1.08002 * 122.42309 * 180.02562 * 9 8 7 32 32 H 1.08005 * 124.50344 * 180.02562 * 10 9 8 33 33 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 34 34 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 35 35 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 36 36 H 1.08998 * 109.47508 * 300.00200 * 16 15 13 37 37 H 1.09011 * 109.47182 * 60.00188 * 16 15 13 38 38 H 0.96991 * 119.99897 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 8 4.1458 -0.0195 0.4433 7 6 4.2472 -1.2076 2.3831 8 6 5.6084 -1.1805 2.5519 9 6 6.0272 -1.8378 3.6811 10 6 5.0501 -2.3867 4.4159 11 16 3.5214 -2.0941 3.7171 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8533 1.1572 -2.4129 15 6 2.6382 -0.7314 -3.5905 16 6 2.6849 0.2505 -4.7628 17 6 3.1807 -0.4615 -5.9951 18 1 3.4373 -1.5095 -5.9466 19 6 3.3079 0.2251 -7.1839 20 7 2.9959 1.5015 -7.2427 21 14 3.9232 -0.6572 -8.7110 22 1 3.0044 -1.7767 -9.0397 23 1 3.9684 0.2957 -9.8490 24 1 5.2850 -1.1925 -8.4585 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 6.2827 -0.6918 1.8643 31 1 7.0688 -1.9077 3.9577 32 1 5.2088 -2.9369 5.3317 33 1 2.2490 -1.6318 -1.1527 34 1 3.6381 -1.1236 -3.4054 35 1 1.9643 -1.5536 -3.8314 36 1 1.6851 0.6431 -4.9481 37 1 3.3591 1.0725 -4.5217 38 1 3.0857 1.9846 -8.0789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292194048.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:47 Heat of formation + Delta-G solvation = -55.868974 kcal Electronic energy + Delta-G solvation = -20640.072082 eV Core-core repulsion = 17380.957185 eV Total energy + Delta-G solvation = -3259.114896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22335 -38.91218 -37.66906 -35.47495 -33.33809 -31.84575 -30.97319 -30.17097 -28.24704 -25.68141 -25.25896 -22.60104 -21.51334 -20.38723 -19.60056 -19.49578 -17.85261 -16.83726 -16.34001 -16.05293 -15.65601 -15.26640 -14.98345 -14.53756 -14.37189 -14.34515 -13.32132 -13.21235 -13.12410 -13.05529 -12.77927 -12.52493 -12.26143 -12.11140 -11.91877 -11.76051 -11.37333 -11.06099 -10.99686 -10.84149 -10.55369 -9.97322 -9.83988 -9.55456 -9.26822 -9.07131 -9.01567 -8.86599 -8.63105 -8.23940 -5.88448 -3.92475 -0.05409 1.10175 1.47947 1.86540 2.66741 3.39304 3.43362 3.45067 3.45735 3.66929 3.82473 4.49875 4.53754 4.55974 4.90695 4.93104 5.02089 5.07823 5.29885 5.40747 5.46042 5.46534 5.57162 5.66598 5.77171 5.84668 5.93524 6.15568 6.27175 6.35785 6.39056 6.91677 7.02051 7.36227 7.82681 7.97658 8.05596 8.16886 8.48047 8.97167 9.16752 9.70340 11.22583 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.002951 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.665295 B = 9486.933120 C =10278.656490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.412 3.588 6 O -0.423 6.423 7 C -0.299 4.299 8 C -0.048 4.048 9 C -0.155 4.155 10 C -0.228 4.228 11 S 0.219 5.781 12 N -0.734 5.734 13 C 0.516 3.484 14 O -0.535 6.535 15 C -0.130 4.130 16 C 0.038 3.962 17 C -0.526 4.526 18 H 0.054 0.946 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -10.631 28.327 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.110 0.890 4 C -0.216 4.216 5 C 0.287 3.713 6 O -0.298 6.298 7 C -0.417 4.417 8 C -0.081 4.081 9 C -0.186 4.186 10 C -0.366 4.366 11 S 0.486 5.514 12 N -0.387 5.387 13 C 0.305 3.695 14 O -0.411 6.411 15 C -0.170 4.170 16 C 0.001 3.999 17 C -0.564 4.564 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.225 0.775 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.414 -9.664 28.106 29.755 hybrid contribution 2.070 -0.733 -0.892 2.370 sum 0.656 -10.397 27.215 29.140 Atomic orbital electron populations 1.22190 0.95120 1.02018 1.02795 1.20579 0.93586 0.98026 0.83088 0.88982 1.22460 0.94307 1.03836 1.00979 1.20059 0.91006 0.77323 0.82868 1.90728 1.71135 1.32129 1.35774 1.24302 0.98613 1.13904 1.04860 1.21109 0.93985 0.96167 0.96827 1.20102 1.01213 1.01458 0.95850 1.25516 0.98187 1.06951 1.05969 1.83004 1.06747 1.47112 1.14495 1.46117 1.69515 1.13473 1.09598 1.21407 0.76109 0.87547 0.84440 1.90646 1.49047 1.16323 1.85035 1.21841 1.00843 1.00911 0.93373 1.18877 0.98280 0.93382 0.89404 1.21208 1.44420 0.96258 0.94532 0.92730 1.25026 0.95629 0.94847 0.98919 1.69995 1.48270 1.08134 1.26517 0.86658 0.79333 0.79349 0.82613 1.20296 1.21314 1.20278 0.91346 0.92534 0.92008 0.87292 0.87991 0.82807 0.83725 0.81358 0.77480 0.90426 0.90506 0.95890 0.95825 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 2 C 0.15 1.98 2.13 -67.93 -0.14 1.84 16 3 H 0.09 1.50 7.39 -51.93 -0.38 1.11 16 4 C -0.18 -1.60 4.53 -27.88 -0.13 -1.72 16 5 C 0.41 4.76 6.79 -33.17 -0.23 4.53 16 6 O -0.42 -6.84 15.73 5.41 0.09 -6.76 16 7 C -0.30 -2.84 6.23 -38.83 -0.24 -3.08 16 8 C -0.05 -0.44 9.95 -40.34 -0.40 -0.85 16 9 C -0.16 -1.10 10.14 -41.44 -0.42 -1.52 16 10 C -0.23 -1.34 10.93 29.25 0.32 -1.02 16 11 S 0.22 1.34 22.42 -107.50 -2.41 -1.07 16 12 N -0.73 -11.19 4.22 -53.81 -0.23 -11.41 16 13 C 0.52 10.72 7.79 -10.98 -0.09 10.64 16 14 O -0.54 -13.40 15.65 5.55 0.09 -13.31 16 15 C -0.13 -2.83 5.64 -27.89 -0.16 -2.99 16 16 C 0.04 1.08 4.26 -27.89 -0.12 0.96 16 17 C -0.53 -15.52 9.11 -34.44 -0.31 -15.83 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -28.29 13.29 55.43 0.74 -27.56 16 21 Si 0.89 22.30 29.54 -169.99 -5.02 17.27 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.15 1.48 8.02 -52.49 -0.42 1.06 16 31 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.39 4.86 8.60 -40.82 -0.35 4.51 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.73 8.10 -51.92 -0.42 0.31 16 38 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -37.48 343.99 -8.57 -46.05 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.34 Total: 0.50 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.66 Total: -8.90 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.51 Total: -38.97 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.17 Total: -20.07 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.41 Total: -1.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.48 -8.57 -46.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292194048.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.816 kcal (2) G-P(sol) polarization free energy of solvation -37.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds