Wall clock time and date at job start Tue Mar 31 2020 07:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99570 * 2 1 4 4 N 1.46503 * 109.47139 * 125.00021 * 3 2 1 5 5 C 1.46498 * 119.99725 * 274.99675 * 4 3 2 6 6 C 1.50699 * 109.46938 * 274.99831 * 5 4 3 7 7 H 1.07996 * 120.00477 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00270 * 180.02562 * 6 5 4 9 9 N 1.31526 * 119.99747 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00387 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47155 * 90.00128 * 10 8 6 12 12 H 1.48506 * 109.46922 * 210.00340 * 10 8 6 13 13 H 1.48497 * 109.47064 * 329.99727 * 10 8 6 14 14 S 1.65602 * 119.99847 * 94.99698 * 4 3 2 15 15 O 1.42105 * 104.27475 * 153.92783 * 14 4 3 16 16 O 1.42091 * 104.27856 * 26.07285 * 14 4 3 17 17 C 1.81396 * 104.44582 * 269.99687 * 14 4 3 18 18 C 1.50707 * 109.47003 * 180.02562 * 17 14 4 19 19 C 1.38238 * 119.99792 * 90.00226 * 18 17 14 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98162 * 18 17 14 24 24 H 1.08004 * 120.00090 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00494 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00299 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47296 * 4.99308 * 3 2 1 28 28 H 1.08997 * 109.46680 * 244.99650 * 3 2 1 29 29 H 1.08994 * 109.47168 * 34.99562 * 5 4 3 30 30 H 1.08994 * 109.47174 * 155.00010 * 5 4 3 31 31 H 0.96996 * 119.99961 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.47589 * 60.00672 * 17 14 4 33 33 H 1.09000 * 109.47576 * 299.99830 * 17 14 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5283 1.7623 2.4522 6 6 2.5990 3.2648 2.5448 7 1 2.9545 3.8416 1.7038 8 6 2.2097 3.9032 3.7032 9 7 1.7772 3.2008 4.7276 10 14 2.2966 5.7657 3.8177 11 1 1.0113 6.3504 3.3582 12 1 2.5460 6.1639 5.2265 13 1 3.4017 6.2634 2.9597 14 16 4.5712 0.8761 0.9173 15 8 5.2787 1.5740 1.9331 16 8 4.8254 1.1283 -0.4578 17 6 4.5758 -0.9073 1.2489 18 6 5.9740 -1.4452 1.0847 19 6 6.8341 -1.4762 2.1665 20 6 8.1164 -1.9700 2.0160 21 6 8.5385 -2.4334 0.7839 22 6 7.6802 -2.3975 -0.2991 23 6 6.3963 -1.9079 -0.1475 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1317 0.0894 28 1 2.6212 1.4026 -0.9314 29 1 1.4982 1.4374 2.5981 30 1 3.1611 1.3207 3.2220 31 1 1.5030 3.6499 5.5424 32 1 3.9086 -1.4090 0.5480 33 1 4.2348 -1.0883 2.2683 34 1 6.5042 -1.1145 3.1292 35 1 8.7885 -1.9938 2.8610 36 1 9.5402 -2.8196 0.6665 37 1 8.0113 -2.7555 -1.2627 38 1 5.7241 -1.8844 -0.9925 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292490771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:32 Heat of formation + Delta-G solvation = -23.958964 kcal Electronic energy + Delta-G solvation = -21724.266731 eV Core-core repulsion = 18466.535557 eV Total energy + Delta-G solvation = -3257.731174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.29166 -36.62789 -36.32980 -35.26659 -33.23503 -32.99171 -31.88454 -30.97691 -27.50619 -27.30107 -24.91124 -22.67196 -22.32899 -21.60026 -19.74293 -18.23259 -17.01684 -16.98137 -16.44653 -15.92099 -15.72575 -15.24083 -15.12860 -14.55570 -14.41318 -13.70807 -13.49657 -13.34481 -13.10685 -12.81641 -12.54049 -12.37990 -12.08469 -11.73140 -11.46221 -11.38602 -11.30103 -11.10272 -11.08193 -10.91685 -10.75513 -10.66186 -10.47469 -9.99320 -9.76073 -9.15148 -9.00836 -8.77318 -8.42324 -8.05634 -6.04661 -4.07711 0.61951 1.31824 1.37390 2.48645 3.33020 3.38720 3.39764 3.47208 3.70150 4.30122 4.45748 4.46770 4.61443 4.88436 4.91851 5.04407 5.14036 5.29381 5.31156 5.38832 5.41306 5.49715 5.53967 5.66395 5.91702 5.96259 6.07678 6.27993 6.34917 6.41580 6.44678 6.46199 6.82341 6.88851 6.95451 7.21897 7.38391 7.58846 7.93187 8.22318 8.94613 9.57041 11.04116 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.005143 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.153639 B = 5443.073069 C = 6402.298675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.174 4.174 3 C 0.143 3.857 4 N -0.979 5.979 5 C 0.255 3.745 6 C -0.523 4.523 7 H 0.061 0.939 8 C 0.062 3.938 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.272 1.272 14 S 2.603 3.397 15 O -0.930 6.930 16 O -0.968 6.968 17 C -0.602 4.602 18 C -0.082 4.082 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -12.930 -8.320 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.194 4.194 3 C 0.017 3.983 4 N -0.817 5.817 5 C 0.134 3.866 6 C -0.563 4.563 7 H 0.079 0.921 8 C -0.140 4.140 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.197 1.197 14 S 2.694 3.306 15 O -0.920 6.920 16 O -0.958 6.958 17 C -0.726 4.726 18 C -0.083 4.083 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.129 4.129 24 H 0.111 0.889 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.190 -12.334 -8.340 16.125 hybrid contribution -0.493 0.243 0.492 0.738 sum 5.697 -12.091 -7.849 15.500 Atomic orbital electron populations 1.23805 0.95809 1.01755 1.00320 1.23509 0.96740 0.98990 1.00171 1.20377 0.93313 0.95297 0.89292 1.57511 1.27374 1.78673 1.18112 1.19092 0.96126 0.95434 0.75973 1.21468 1.43232 0.91740 0.99858 0.92077 1.24919 0.95052 0.98647 0.95398 1.69920 1.44050 1.35576 1.04130 0.86523 0.78414 0.85308 0.77394 1.20650 1.21092 1.19674 1.05359 0.74260 0.76587 0.74407 1.93630 1.71284 1.67678 1.59399 1.93500 1.84449 1.83586 1.34308 1.29979 1.00537 1.29408 1.12668 1.19082 0.93104 1.01457 0.94692 1.21274 0.93959 0.98480 0.98831 1.21181 0.95854 0.98714 0.97815 1.21225 0.99703 0.99770 0.93079 1.21143 0.93668 0.99985 0.98999 1.21175 0.96845 0.98176 0.96685 0.88900 0.88130 0.88147 0.88948 0.89258 0.94451 0.94466 0.92744 0.84820 0.84167 0.84951 0.85494 0.85828 0.85623 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 14.32 29.01 0.42 -1.93 16 2 C -0.17 -2.48 9.84 -36.02 -0.35 -2.84 16 3 C 0.14 2.46 6.09 -5.19 -0.03 2.43 16 4 N -0.98 -19.89 2.68 -116.95 -0.31 -20.20 16 5 C 0.26 6.28 5.01 -5.20 -0.03 6.25 16 6 C -0.52 -14.62 9.38 -34.44 -0.32 -14.95 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 10 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 S 2.60 50.75 5.35 -107.50 -0.58 50.18 16 15 O -0.93 -22.08 16.99 -57.54 -0.98 -23.05 16 16 O -0.97 -19.82 16.53 -57.54 -0.95 -20.77 16 17 C -0.60 -8.74 6.31 36.01 0.23 -8.51 16 18 C -0.08 -1.19 5.14 -104.62 -0.54 -1.72 16 19 C -0.11 -1.49 9.70 -39.58 -0.38 -1.87 16 20 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 21 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 22 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 23 C -0.11 -1.43 9.70 -39.58 -0.38 -1.81 16 24 H 0.09 1.03 8.06 -52.48 -0.42 0.60 16 25 H 0.10 1.32 7.84 -52.48 -0.41 0.91 16 26 H 0.10 1.23 7.24 -52.49 -0.38 0.85 16 27 H 0.09 1.64 7.76 -51.93 -0.40 1.24 16 28 H 0.09 1.45 6.82 -51.93 -0.35 1.10 16 29 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.13 1.57 7.27 -51.92 -0.38 1.19 16 33 H 0.14 1.89 8.08 -51.92 -0.42 1.47 16 34 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -33.80 341.99 -9.88 -43.68 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.24 Total: 1.96 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -2.69 Total: -28.50 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.42 Total: -45.49 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -1.93 Total: -43.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 50.75 SS G_CDS: -0.58 Total: 50.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.80 -9.88 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292490771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.718 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds