Wall clock time and date at job start Tue Mar 31 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99570 * 2 1 4 4 N 1.46503 * 109.47139 * 125.00021 * 3 2 1 5 5 C 1.46498 * 119.99725 * 274.99675 * 4 3 2 6 6 C 1.50699 * 109.46938 * 274.99831 * 5 4 3 7 7 H 1.07996 * 120.00477 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00270 * 180.02562 * 6 5 4 9 9 N 1.31526 * 119.99747 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00387 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47155 * 90.00128 * 10 8 6 12 12 H 1.48506 * 109.46922 * 210.00340 * 10 8 6 13 13 H 1.48497 * 109.47064 * 329.99727 * 10 8 6 14 14 S 1.65602 * 119.99847 * 94.99698 * 4 3 2 15 15 O 1.42105 * 104.27475 * 153.92783 * 14 4 3 16 16 O 1.42091 * 104.27856 * 26.07285 * 14 4 3 17 17 C 1.81396 * 104.44582 * 269.99687 * 14 4 3 18 18 C 1.50707 * 109.47003 * 180.02562 * 17 14 4 19 19 C 1.38238 * 119.99792 * 90.00226 * 18 17 14 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98162 * 18 17 14 24 24 H 1.08004 * 120.00090 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00494 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00299 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47296 * 4.99308 * 3 2 1 28 28 H 1.08997 * 109.46680 * 244.99650 * 3 2 1 29 29 H 1.08994 * 109.47168 * 34.99562 * 5 4 3 30 30 H 1.08994 * 109.47174 * 155.00010 * 5 4 3 31 31 H 0.96996 * 119.99961 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.47589 * 60.00672 * 17 14 4 33 33 H 1.09000 * 109.47576 * 299.99830 * 17 14 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5283 1.7623 2.4522 6 6 2.5990 3.2648 2.5448 7 1 2.9545 3.8416 1.7038 8 6 2.2097 3.9032 3.7032 9 7 1.7772 3.2008 4.7276 10 14 2.2966 5.7657 3.8177 11 1 1.0113 6.3504 3.3582 12 1 2.5460 6.1639 5.2265 13 1 3.4017 6.2634 2.9597 14 16 4.5712 0.8761 0.9173 15 8 5.2787 1.5740 1.9331 16 8 4.8254 1.1283 -0.4578 17 6 4.5758 -0.9073 1.2489 18 6 5.9740 -1.4452 1.0847 19 6 6.8341 -1.4762 2.1665 20 6 8.1164 -1.9700 2.0160 21 6 8.5385 -2.4334 0.7839 22 6 7.6802 -2.3975 -0.2991 23 6 6.3963 -1.9079 -0.1475 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1317 0.0894 28 1 2.6212 1.4026 -0.9314 29 1 1.4982 1.4374 2.5981 30 1 3.1611 1.3207 3.2220 31 1 1.5030 3.6499 5.5424 32 1 3.9086 -1.4090 0.5480 33 1 4.2348 -1.0883 2.2683 34 1 6.5042 -1.1145 3.1292 35 1 8.7885 -1.9938 2.8610 36 1 9.5402 -2.8196 0.6665 37 1 8.0113 -2.7555 -1.2627 38 1 5.7241 -1.8844 -0.9925 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292490771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:31 Heat of formation + Delta-G solvation = -45.654938 kcal Electronic energy + Delta-G solvation = -21725.207539 eV Core-core repulsion = 18466.535557 eV Total energy + Delta-G solvation = -3258.671982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22102 -38.19602 -37.90596 -36.90085 -35.00866 -34.04975 -33.50452 -31.88503 -29.33771 -28.40748 -26.52093 -24.19370 -23.58937 -22.60797 -20.88832 -19.78635 -18.75066 -18.37970 -17.91076 -17.45757 -17.14600 -16.53614 -16.16037 -16.08608 -15.82136 -15.20953 -14.63782 -14.38536 -14.36846 -14.19451 -13.83671 -13.77714 -13.58937 -13.35708 -13.11475 -13.08557 -12.91647 -12.46324 -12.42230 -12.35064 -12.26118 -12.07011 -11.97737 -11.79327 -11.66695 -10.58509 -10.28287 -9.94622 -9.93226 -9.57883 -8.19555 -6.30122 -0.81712 0.37586 0.39707 1.34402 1.37890 1.40099 1.50898 1.92696 2.41385 2.74897 2.95400 3.10893 3.18711 3.38190 3.75820 3.92820 4.07329 4.13289 4.18306 4.23837 4.33478 4.49937 4.54273 4.62580 4.81966 4.95583 4.97680 5.07526 5.09974 5.20949 5.44327 5.45756 5.48441 5.52509 5.67668 5.73631 5.83055 6.00190 6.02705 6.13438 6.77180 7.37901 8.87955 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.005143 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.153639 B = 5443.073069 C = 6402.298675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.188 4.188 3 C 0.137 3.863 4 N -0.987 5.987 5 C 0.272 3.728 6 C -0.545 4.545 7 H 0.047 0.953 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.953 3.047 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.277 1.277 14 S 2.595 3.405 15 O -0.987 6.987 16 O -0.986 6.986 17 C -0.566 4.566 18 C -0.113 4.113 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.122 4.122 24 H 0.121 0.879 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.168 0.832 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -14.799 -9.378 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C 0.012 3.988 4 N -0.824 5.824 5 C 0.149 3.851 6 C -0.584 4.584 7 H 0.065 0.935 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.778 3.222 11 H -0.190 1.190 12 H -0.202 1.202 13 H -0.203 1.203 14 S 2.693 3.307 15 O -0.977 6.977 16 O -0.977 6.977 17 C -0.696 4.696 18 C -0.115 4.115 19 C -0.150 4.150 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.141 4.141 24 H 0.139 0.861 25 H 0.112 0.888 26 H 0.144 0.856 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.701 -14.134 -9.431 18.265 hybrid contribution -0.562 0.693 0.758 1.171 sum 6.139 -13.441 -8.673 17.133 Atomic orbital electron populations 1.24041 0.95535 1.02839 0.98160 1.23443 0.97114 0.98235 1.02018 1.20513 0.92974 0.96922 0.88377 1.57328 1.27869 1.79987 1.17201 1.18607 0.95228 0.93560 0.77734 1.21801 1.43195 0.93737 0.99677 0.93454 1.25687 0.94746 1.02989 0.95138 1.70000 1.44631 1.37189 1.04540 0.85635 0.78725 0.80294 0.77546 1.19011 1.20227 1.20251 1.05299 0.73321 0.78738 0.73305 1.93554 1.72468 1.71108 1.60610 1.93460 1.84403 1.85161 1.34671 1.29570 1.02377 1.23315 1.14309 1.19202 0.92943 1.03446 0.95872 1.21474 0.95277 0.99518 0.98757 1.21533 0.95291 0.98148 0.99398 1.21696 1.01096 0.98097 0.92247 1.21591 0.92901 0.98942 1.00613 1.21497 0.98167 0.98066 0.96390 0.86081 0.88792 0.85637 0.90530 0.88743 0.95129 0.96304 0.92404 0.81400 0.83141 0.85658 0.83318 0.82409 0.82506 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 14.32 67.78 0.97 -3.12 16 2 C -0.19 -5.11 9.84 25.65 0.25 -4.86 16 3 C 0.14 4.78 6.09 85.63 0.52 5.31 16 4 N -0.99 -41.21 2.68 -523.93 -1.41 -42.62 16 5 C 0.27 13.89 5.01 85.63 0.43 14.32 16 6 C -0.54 -31.53 9.38 25.60 0.24 -31.29 16 7 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 8 C 0.01 0.79 5.46 84.65 0.46 1.25 16 9 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 10 Si 0.95 45.48 29.54 68.60 2.03 47.51 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 14 S 2.60 103.51 5.35 -56.49 -0.30 103.21 16 15 O -0.99 -49.26 16.99 -127.65 -2.17 -51.43 16 16 O -0.99 -40.95 16.53 -127.65 -2.11 -43.06 16 17 C -0.57 -15.86 6.31 71.24 0.45 -15.42 16 18 C -0.11 -3.13 5.14 -19.86 -0.10 -3.24 16 19 C -0.13 -3.58 9.70 22.27 0.22 -3.37 16 20 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 21 C -0.11 -2.05 10.05 22.27 0.22 -1.83 16 22 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 23 C -0.12 -2.90 9.70 22.27 0.22 -2.68 16 24 H 0.12 2.29 8.06 -2.91 -0.02 2.26 16 25 H 0.09 2.39 7.84 -2.91 -0.02 2.37 16 26 H 0.13 2.73 7.24 -2.91 -0.02 2.71 16 27 H 0.08 2.83 7.76 -2.39 -0.02 2.81 16 28 H 0.09 3.12 6.82 -2.39 -0.02 3.11 16 29 H 0.03 1.58 8.11 -2.39 -0.02 1.56 16 30 H 0.02 1.03 7.61 -2.39 -0.02 1.01 16 31 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.17 3.49 7.27 -2.39 -0.02 3.48 16 33 H 0.15 3.96 8.08 -2.39 -0.02 3.94 16 34 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -75.43 341.99 1.69 -73.74 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.03 Total: 16.42 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 4.33 Total: -49.55 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -1.12 Total: -96.84 kcal Atomic # 8 Polarization: -90.21 SS G_CDS: -4.28 Total: -94.49 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 103.51 SS G_CDS: -0.30 Total: 103.21 kcal Total: -75.43 1.69 -73.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292490771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.087 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds