Wall clock time and date at job start Tue Mar 31 2020 07:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47039 * 2 1 4 4 C 1.50698 * 109.47313 * 120.00531 * 2 1 3 5 5 O 1.21294 * 119.99984 * 105.57740 * 4 2 1 6 6 N 1.34775 * 119.99843 * 285.56818 * 4 2 1 7 7 C 1.46501 * 120.00027 * 185.25809 * 6 4 2 8 8 C 1.37103 * 119.99862 * 5.26505 * 6 4 2 9 9 H 1.07996 * 119.99826 * 19.54345 * 8 6 4 10 10 C 1.38947 * 119.99600 * 199.54314 * 8 6 4 11 11 N 1.31415 * 120.00422 * 353.77092 * 10 8 6 12 12 Si 1.86804 * 119.99630 * 173.76885 * 10 8 6 13 13 H 1.48503 * 109.47154 * 180.02562 * 12 10 8 14 14 H 1.48504 * 109.47152 * 300.00002 * 12 10 8 15 15 H 1.48497 * 109.47246 * 60.00103 * 12 10 8 16 16 C 1.53005 * 109.46966 * 240.00636 * 2 1 3 17 17 H 1.09001 * 109.68683 * 184.45864 * 16 2 1 18 18 O 1.43020 * 109.68740 * 304.99332 * 16 2 1 19 19 C 1.43040 * 114.24701 * 171.77756 * 18 16 2 20 20 C 1.53439 * 109.08248 * 288.74323 * 19 18 16 21 21 C 1.51404 * 107.89880 * 47.45994 * 20 19 18 22 22 S 1.75514 * 126.26851 * 164.51384 * 21 20 19 23 23 C 1.75808 * 91.03403 * 179.97438 * 22 21 20 24 24 C 1.33072 * 109.61302 * 359.97438 * 23 22 21 25 25 C 1.34871 * 123.68691 * 344.48399 * 21 20 19 26 26 H 1.08992 * 109.47350 * 50.17617 * 1 2 3 27 27 H 1.09002 * 109.46962 * 170.17596 * 1 2 3 28 28 H 1.09001 * 109.46956 * 290.17195 * 1 2 3 29 29 H 1.08998 * 109.47321 * 234.60118 * 7 6 4 30 30 H 1.08996 * 109.47368 * 354.60652 * 7 6 4 31 31 H 1.09005 * 109.46608 * 114.60455 * 7 6 4 32 32 H 0.97001 * 119.99825 * 180.02562 * 11 10 8 33 33 H 1.09005 * 109.53691 * 48.62267 * 19 18 16 34 34 H 1.08998 * 109.53871 * 168.86154 * 19 18 16 35 35 H 1.08999 * 109.77248 * 167.06267 * 20 19 18 36 36 H 1.09003 * 109.77192 * 287.80380 * 20 19 18 37 37 H 1.08003 * 125.19381 * 180.02562 * 23 22 21 38 38 H 1.08000 * 122.18224 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5005 -1.8257 1.1381 6 7 1.9617 -0.1067 2.4332 7 6 2.5534 -0.7474 3.6103 8 6 1.3358 1.1070 2.5553 9 1 0.6394 1.4340 1.7974 10 6 1.5976 1.9162 3.6541 11 7 2.3483 1.4689 4.6356 12 14 0.8824 3.6399 3.7360 13 1 1.3074 4.2926 5.0004 14 1 1.3717 4.4343 2.5807 15 1 -0.5999 3.5634 3.6918 16 6 2.0400 -0.7211 -1.2494 17 1 3.1271 -0.7928 -1.2140 18 8 1.4725 -2.0323 -1.3143 19 6 1.7355 -2.7264 -2.5370 20 6 0.9221 -2.0798 -3.6659 21 6 1.1128 -0.5804 -3.5770 22 16 0.7275 0.5911 -4.8258 23 6 1.2777 1.9105 -3.8024 24 6 1.6993 1.4259 -2.6370 25 6 1.6159 0.0468 -2.4941 26 1 -0.3633 0.6581 -0.7892 27 1 -0.3633 -1.0126 -0.1753 28 1 -0.3633 0.3544 0.9647 29 1 1.7996 -0.8376 4.3925 30 1 2.9171 -1.7388 3.3402 31 1 3.3840 -0.1424 3.9742 32 1 2.5307 2.0338 5.4028 33 1 2.7983 -2.6627 -2.7709 34 1 1.4463 -3.7721 -2.4321 35 1 1.2788 -2.4404 -4.6307 36 1 -0.1332 -2.3258 -3.5476 37 1 1.2734 2.9550 -4.0773 38 1 2.0824 2.0632 -1.8537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293199466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:32 Heat of formation + Delta-G solvation = -32.942713 kcal Electronic energy + Delta-G solvation = -22435.239905 eV Core-core repulsion = 19177.119166 eV Total energy + Delta-G solvation = -3258.120739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.92850 -38.20891 -36.26165 -34.68765 -33.41913 -31.69521 -31.23331 -28.63767 -26.25115 -25.61237 -24.69520 -23.94997 -21.81505 -21.42817 -18.90240 -17.96788 -17.39985 -17.03283 -16.44755 -15.56267 -14.94621 -14.72684 -14.47971 -14.28992 -13.94337 -13.79337 -13.42363 -13.08259 -12.78629 -12.57422 -12.13570 -12.03771 -11.87293 -11.66638 -11.37419 -11.26979 -11.00433 -10.99354 -10.75261 -10.67738 -10.43187 -10.36962 -10.22733 -10.01484 -9.22398 -9.03699 -8.49381 -8.26809 -8.12596 -7.74026 -6.23899 -3.88995 1.04639 1.66929 2.02848 2.76988 3.11820 3.19260 3.20143 3.95443 4.08671 4.19211 4.70788 4.74000 4.99829 5.07900 5.12651 5.25208 5.31871 5.51716 5.54289 5.69655 5.75912 5.84258 5.94288 6.00788 6.08242 6.28352 6.33180 6.43835 6.58363 6.59272 6.66249 6.91707 7.01830 7.26089 7.45384 7.59814 7.64693 7.86539 8.46548 9.12904 9.63173 10.03657 10.69088 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.005283 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.151139 B = 5299.032931 C = 6446.246787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 H 0.099 0.901 4 C 0.461 3.539 5 O -0.598 6.598 6 N -0.449 5.449 7 C 0.115 3.885 8 C -0.333 4.333 9 H 0.103 0.897 10 C 0.036 3.964 11 N -0.874 5.874 12 Si 0.920 3.080 13 H -0.283 1.283 14 H -0.273 1.273 15 H -0.273 1.273 16 C 0.178 3.822 17 H 0.072 0.928 18 O -0.343 6.343 19 C 0.064 3.936 20 C -0.080 4.080 21 C -0.178 4.178 22 S 0.079 5.921 23 C -0.217 4.217 24 C -0.113 4.113 25 C -0.127 4.127 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.266 0.734 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 -0.185 -15.256 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.117 0.883 4 C 0.249 3.751 5 O -0.484 6.484 6 N -0.168 5.168 7 C -0.028 4.028 8 C -0.461 4.461 9 H 0.121 0.879 10 C -0.168 4.168 11 N -0.513 5.513 12 Si 0.746 3.254 13 H -0.208 1.208 14 H -0.198 1.198 15 H -0.198 1.198 16 C 0.117 3.883 17 H 0.090 0.910 18 O -0.260 6.260 19 C -0.015 4.015 20 C -0.120 4.120 21 C -0.295 4.295 22 S 0.345 5.655 23 C -0.352 4.352 24 C -0.143 4.143 25 C -0.139 4.139 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.181 0.819 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.838 -0.770 -16.392 16.653 hybrid contribution 0.274 1.482 1.319 2.003 sum -2.564 0.713 -15.073 15.306 Atomic orbital electron populations 1.21709 0.93510 1.02081 1.02229 1.21029 0.97867 0.99444 0.91566 0.88341 1.19819 0.83745 0.87109 0.84404 1.90541 1.51691 1.20107 1.86013 1.43610 1.48893 1.18448 1.05823 1.21613 0.99311 0.95073 0.86767 1.19811 1.23335 0.93696 1.09282 0.87942 1.25396 0.96307 0.99493 0.95583 1.70116 1.37018 1.36251 1.07961 0.86110 0.79210 0.82227 0.77820 1.20834 1.19789 1.19849 1.20765 0.96555 0.81449 0.89522 0.91004 1.88177 1.75722 1.27228 1.34906 1.22568 0.98115 0.96359 0.84446 1.20998 1.02346 0.88295 1.00339 1.24676 1.08108 0.99434 0.97267 1.83883 1.64991 0.97543 1.19127 1.25343 1.09338 1.02253 0.98246 1.20005 1.01852 0.94469 0.97999 1.20411 1.02466 0.93921 0.97119 0.93338 0.92114 0.90863 0.93639 0.94667 0.90189 0.92280 0.93035 0.88424 0.90050 0.89622 0.81887 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.36 37.16 0.31 -2.29 16 2 C -0.08 -1.56 1.54 -91.77 -0.14 -1.70 16 3 H 0.10 1.92 6.61 -51.93 -0.34 1.57 16 4 C 0.46 11.38 6.83 -10.99 -0.08 11.31 16 5 O -0.60 -16.13 14.67 -12.68 -0.19 -16.32 16 6 N -0.45 -11.63 3.03 -122.19 -0.37 -12.00 16 7 C 0.12 2.96 8.94 59.85 0.53 3.50 16 8 C -0.33 -8.40 8.45 -14.93 -0.13 -8.53 16 9 H 0.10 2.40 4.83 -52.49 -0.25 2.15 16 10 C 0.04 0.91 5.46 -17.47 -0.10 0.81 16 11 N -0.87 -22.89 9.78 55.50 0.54 -22.35 16 12 Si 0.92 19.34 29.56 -169.99 -5.02 14.31 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 16 C 0.18 3.25 2.28 -27.10 -0.06 3.19 16 17 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 18 O -0.34 -6.43 8.27 -53.45 -0.44 -6.87 16 19 C 0.06 0.89 6.83 37.39 0.26 1.15 16 20 C -0.08 -0.97 6.55 -27.31 -0.18 -1.14 16 21 C -0.18 -2.48 6.44 -35.16 -0.23 -2.70 16 22 S 0.08 0.94 23.32 -107.50 -2.51 -1.57 16 23 C -0.22 -2.64 11.21 28.94 0.32 -2.31 16 24 C -0.11 -1.59 9.36 -41.13 -0.39 -1.98 16 25 C -0.13 -1.97 4.59 -104.79 -0.48 -2.45 16 26 H 0.05 0.82 7.61 -51.93 -0.40 0.42 16 27 H 0.06 1.18 7.26 -51.93 -0.38 0.81 16 28 H 0.07 1.47 5.77 -51.93 -0.30 1.17 16 29 H 0.04 1.18 7.78 -51.93 -0.40 0.78 16 30 H 0.03 0.89 6.91 -51.93 -0.36 0.53 16 31 H 0.08 2.12 6.44 -51.93 -0.33 1.79 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.14 1.93 7.29 -52.49 -0.38 1.55 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -29.76 314.29 -8.41 -38.17 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.82 Total: 5.04 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.35 Total: -3.16 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.17 Total: -34.35 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.63 Total: -23.18 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.76 -8.41 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293199466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.230 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds