Wall clock time and date at job start Tue Mar 31 2020 07:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47039 * 2 1 4 4 C 1.50698 * 109.47313 * 120.00531 * 2 1 3 5 5 O 1.21294 * 119.99984 * 105.57740 * 4 2 1 6 6 N 1.34775 * 119.99843 * 285.56818 * 4 2 1 7 7 C 1.46501 * 120.00027 * 185.25809 * 6 4 2 8 8 C 1.37103 * 119.99862 * 5.26505 * 6 4 2 9 9 H 1.07996 * 119.99826 * 19.54345 * 8 6 4 10 10 C 1.38947 * 119.99600 * 199.54314 * 8 6 4 11 11 N 1.31415 * 120.00422 * 353.77092 * 10 8 6 12 12 Si 1.86804 * 119.99630 * 173.76885 * 10 8 6 13 13 H 1.48503 * 109.47154 * 180.02562 * 12 10 8 14 14 H 1.48504 * 109.47152 * 300.00002 * 12 10 8 15 15 H 1.48497 * 109.47246 * 60.00103 * 12 10 8 16 16 C 1.53005 * 109.46966 * 240.00636 * 2 1 3 17 17 H 1.09001 * 109.68683 * 184.45864 * 16 2 1 18 18 O 1.43020 * 109.68740 * 304.99332 * 16 2 1 19 19 C 1.43040 * 114.24701 * 171.77756 * 18 16 2 20 20 C 1.53439 * 109.08248 * 288.74323 * 19 18 16 21 21 C 1.51404 * 107.89880 * 47.45994 * 20 19 18 22 22 S 1.75514 * 126.26851 * 164.51384 * 21 20 19 23 23 C 1.75808 * 91.03403 * 179.97438 * 22 21 20 24 24 C 1.33072 * 109.61302 * 359.97438 * 23 22 21 25 25 C 1.34871 * 123.68691 * 344.48399 * 21 20 19 26 26 H 1.08992 * 109.47350 * 50.17617 * 1 2 3 27 27 H 1.09002 * 109.46962 * 170.17596 * 1 2 3 28 28 H 1.09001 * 109.46956 * 290.17195 * 1 2 3 29 29 H 1.08998 * 109.47321 * 234.60118 * 7 6 4 30 30 H 1.08996 * 109.47368 * 354.60652 * 7 6 4 31 31 H 1.09005 * 109.46608 * 114.60455 * 7 6 4 32 32 H 0.97001 * 119.99825 * 180.02562 * 11 10 8 33 33 H 1.09005 * 109.53691 * 48.62267 * 19 18 16 34 34 H 1.08998 * 109.53871 * 168.86154 * 19 18 16 35 35 H 1.08999 * 109.77248 * 167.06267 * 20 19 18 36 36 H 1.09003 * 109.77192 * 287.80380 * 20 19 18 37 37 H 1.08003 * 125.19381 * 180.02562 * 23 22 21 38 38 H 1.08000 * 122.18224 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5005 -1.8257 1.1381 6 7 1.9617 -0.1067 2.4332 7 6 2.5534 -0.7474 3.6103 8 6 1.3358 1.1070 2.5553 9 1 0.6394 1.4340 1.7974 10 6 1.5976 1.9162 3.6541 11 7 2.3483 1.4689 4.6356 12 14 0.8824 3.6399 3.7360 13 1 1.3074 4.2926 5.0004 14 1 1.3717 4.4343 2.5807 15 1 -0.5999 3.5634 3.6918 16 6 2.0400 -0.7211 -1.2494 17 1 3.1271 -0.7928 -1.2140 18 8 1.4725 -2.0323 -1.3143 19 6 1.7355 -2.7264 -2.5370 20 6 0.9221 -2.0798 -3.6659 21 6 1.1128 -0.5804 -3.5770 22 16 0.7275 0.5911 -4.8258 23 6 1.2777 1.9105 -3.8024 24 6 1.6993 1.4259 -2.6370 25 6 1.6159 0.0468 -2.4941 26 1 -0.3633 0.6581 -0.7892 27 1 -0.3633 -1.0126 -0.1753 28 1 -0.3633 0.3544 0.9647 29 1 1.7996 -0.8376 4.3925 30 1 2.9171 -1.7388 3.3402 31 1 3.3840 -0.1424 3.9742 32 1 2.5307 2.0338 5.4028 33 1 2.7983 -2.6627 -2.7709 34 1 1.4463 -3.7721 -2.4321 35 1 1.2788 -2.4404 -4.6307 36 1 -0.1332 -2.3258 -3.5476 37 1 1.2734 2.9550 -4.0773 38 1 2.0824 2.0632 -1.8537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293199466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:32 Heat of formation + Delta-G solvation = -49.109903 kcal Electronic energy + Delta-G solvation = -22435.940966 eV Core-core repulsion = 19177.119166 eV Total energy + Delta-G solvation = -3258.821801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31023 -39.95219 -37.40712 -36.65536 -34.91332 -33.34134 -32.72979 -29.87822 -28.20078 -27.01446 -26.46810 -25.16490 -23.21848 -22.62422 -20.78810 -19.14985 -18.97653 -18.27381 -17.98635 -17.18321 -16.42115 -16.15518 -15.96891 -15.61735 -15.57645 -15.42516 -14.60372 -14.54078 -14.33724 -13.99795 -13.54222 -13.35490 -13.24985 -13.09968 -13.01913 -12.81026 -12.67944 -12.49654 -12.24431 -12.16384 -12.06825 -11.97642 -11.72534 -11.49028 -10.96833 -10.48250 -10.12178 -9.77922 -9.46762 -9.22516 -8.17250 -5.89249 0.04089 0.69853 1.04303 1.46689 1.48305 1.58475 1.69251 2.08584 2.31614 2.91258 3.02393 3.19383 3.71063 3.76670 3.91590 4.12811 4.22625 4.25307 4.32689 4.44132 4.54130 4.58946 4.68991 4.80473 4.83582 4.87061 5.00530 5.03840 5.08334 5.11886 5.19683 5.31971 5.40603 5.47471 5.52860 5.61271 5.88339 6.36588 6.48616 7.16589 7.66073 8.06387 8.77583 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.005283 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.151139 B = 5299.032931 C = 6446.246787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 H 0.104 0.896 4 C 0.451 3.549 5 O -0.628 6.628 6 N -0.464 5.464 7 C 0.129 3.871 8 C -0.351 4.351 9 H 0.119 0.881 10 C -0.010 4.010 11 N -0.905 5.905 12 Si 0.990 3.010 13 H -0.285 1.285 14 H -0.260 1.260 15 H -0.265 1.265 16 C 0.183 3.817 17 H 0.049 0.951 18 O -0.375 6.375 19 C 0.055 3.945 20 C -0.075 4.075 21 C -0.190 4.190 22 S 0.132 5.868 23 C -0.210 4.210 24 C -0.136 4.136 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.268 0.732 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.191 0.809 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 1.467 -17.875 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.122 0.878 4 C 0.240 3.760 5 O -0.516 6.516 6 N -0.183 5.183 7 C -0.015 4.015 8 C -0.478 4.478 9 H 0.137 0.863 10 C -0.211 4.211 11 N -0.545 5.545 12 Si 0.813 3.187 13 H -0.211 1.211 14 H -0.185 1.185 15 H -0.189 1.189 16 C 0.123 3.877 17 H 0.066 0.934 18 O -0.294 6.294 19 C -0.023 4.023 20 C -0.114 4.114 21 C -0.308 4.308 22 S 0.398 5.602 23 C -0.345 4.345 24 C -0.166 4.166 25 C -0.159 4.159 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.208 0.792 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.271 0.877 -19.032 19.525 hybrid contribution 0.744 0.880 2.079 2.377 sum -3.527 1.757 -16.953 17.405 Atomic orbital electron populations 1.21565 0.92321 1.01937 1.02233 1.20971 0.98618 0.99265 0.90214 0.87844 1.20674 0.83020 0.86924 0.85346 1.90503 1.52865 1.21558 1.86637 1.43900 1.49186 1.19064 1.06131 1.21382 0.98578 0.94606 0.86906 1.20248 1.23938 0.93499 1.10069 0.86349 1.26323 0.96559 1.03283 0.94935 1.70241 1.38137 1.37621 1.08472 0.85031 0.78723 0.77048 0.77887 1.21077 1.18484 1.18934 1.20458 0.95154 0.81977 0.90141 0.93370 1.88105 1.75966 1.27683 1.37648 1.22840 0.98717 0.97045 0.83724 1.21022 1.02466 0.87205 1.00721 1.25014 1.07201 1.00861 0.97702 1.83723 1.63473 0.95887 1.17110 1.25721 1.07509 1.03866 0.97434 1.20023 1.03520 0.93911 0.99154 1.20154 1.04694 0.94551 0.96527 0.90873 0.93114 0.92186 0.94698 0.95177 0.91245 0.92235 0.93098 0.86784 0.87136 0.88853 0.79164 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 8.36 71.98 0.60 -3.98 16 2 C -0.07 -2.82 1.54 -11.54 -0.02 -2.84 16 3 H 0.10 4.05 6.61 -2.38 -0.02 4.03 16 4 C 0.45 22.93 6.83 87.66 0.60 23.53 16 5 O -0.63 -35.23 14.67 14.35 0.21 -35.02 16 6 N -0.46 -24.72 3.03 -658.89 -1.99 -26.71 16 7 C 0.13 6.90 8.94 127.77 1.14 8.04 16 8 C -0.35 -17.76 8.45 84.04 0.71 -17.05 16 9 H 0.12 5.48 4.83 -2.91 -0.01 5.47 16 10 C -0.01 -0.51 5.46 84.93 0.46 -0.05 16 11 N -0.91 -48.12 9.78 21.66 0.21 -47.91 16 12 Si 0.99 38.94 29.56 68.60 2.03 40.96 16 13 H -0.29 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 15 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 16 C 0.18 6.80 2.28 30.36 0.07 6.86 16 17 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 18 O -0.38 -14.24 8.27 -131.56 -1.09 -15.32 16 19 C 0.05 1.48 6.83 72.13 0.49 1.98 16 20 C -0.07 -1.62 6.55 30.22 0.20 -1.43 16 21 C -0.19 -4.85 6.44 25.14 0.16 -4.69 16 22 S 0.13 2.64 23.32 -56.49 -1.32 1.33 16 23 C -0.21 -4.41 11.21 66.66 0.75 -3.66 16 24 C -0.14 -3.59 9.36 21.27 0.20 -3.39 16 25 C -0.15 -4.38 4.59 -19.97 -0.09 -4.47 16 26 H 0.07 2.34 7.61 -2.39 -0.02 2.32 16 27 H 0.05 1.97 7.26 -2.39 -0.02 1.95 16 28 H 0.06 2.37 5.77 -2.39 -0.01 2.36 16 29 H 0.03 1.88 7.78 -2.39 -0.02 1.87 16 30 H 0.03 1.59 6.91 -2.39 -0.02 1.57 16 31 H 0.07 3.84 6.44 -2.38 -0.02 3.83 16 32 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.05 1.35 8.09 -2.38 -0.02 1.33 16 34 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.19 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.14 3.66 7.29 -2.91 -0.02 3.63 16 Total: -1.00 -65.02 314.29 4.41 -60.62 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.08 Total: 23.21 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 5.28 Total: -1.15 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.78 Total: -74.62 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.88 Total: -50.34 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.32 Total: 1.33 kcal Total: -65.02 4.41 -60.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293199466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.506 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds