Wall clock time and date at job start Tue Mar 31 2020 07:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46739 * 2 1 4 4 C 1.50694 * 109.47022 * 239.99889 * 2 1 3 5 5 O 1.21291 * 120.00284 * 258.69606 * 4 2 1 6 6 N 1.34781 * 120.00081 * 78.70468 * 4 2 1 7 7 C 1.46499 * 120.00188 * 183.28184 * 6 4 2 8 8 C 1.37102 * 119.99656 * 3.27551 * 6 4 2 9 9 H 1.07995 * 120.00311 * 20.32350 * 8 6 4 10 10 C 1.38954 * 119.99783 * 200.31521 * 8 6 4 11 11 N 1.31412 * 119.99858 * 9.62687 * 10 8 6 12 12 Si 1.86796 * 120.00053 * 189.62107 * 10 8 6 13 13 H 1.48499 * 109.46912 * 94.93858 * 12 10 8 14 14 H 1.48497 * 109.47204 * 214.94268 * 12 10 8 15 15 H 1.48506 * 109.46956 * 334.94239 * 12 10 8 16 16 C 1.52997 * 109.46948 * 119.99804 * 2 1 3 17 17 H 1.08994 * 109.68935 * 180.53604 * 16 2 1 18 18 O 1.43024 * 109.68924 * 60.00256 * 16 2 1 19 19 C 1.43039 * 114.24841 * 188.22370 * 18 16 2 20 20 C 1.53443 * 109.14748 * 71.21982 * 19 18 16 21 21 C 1.51447 * 107.87852 * 312.65593 * 20 19 18 22 22 S 1.75515 * 126.24429 * 195.46744 * 21 20 19 23 23 C 1.75816 * 91.03113 * 179.89278 * 22 21 20 24 24 C 1.33068 * 109.61370 * 0.02562 * 23 22 21 25 25 C 1.34872 * 123.70755 * 15.36259 * 21 20 19 26 26 H 1.08997 * 109.47647 * 298.84318 * 1 2 3 27 27 H 1.09002 * 109.47234 * 58.84369 * 1 2 3 28 28 H 1.09001 * 109.47162 * 178.84043 * 1 2 3 29 29 H 1.08998 * 109.47285 * 94.38536 * 7 6 4 30 30 H 1.09001 * 109.47011 * 214.38863 * 7 6 4 31 31 H 1.09004 * 109.46674 * 334.38726 * 7 6 4 32 32 H 0.96996 * 119.99607 * 180.02562 * 11 10 8 33 33 H 1.08995 * 109.54005 * 191.14592 * 19 18 16 34 34 H 1.09003 * 109.53268 * 311.30458 * 19 18 16 35 35 H 1.08997 * 109.76683 * 72.18345 * 20 19 18 36 36 H 1.08999 * 109.77062 * 192.98335 * 20 19 18 37 37 H 1.08003 * 125.19134 * 180.02562 * 23 22 21 38 38 H 1.08003 * 122.17688 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.4286 -1.8540 -1.1512 6 7 2.0414 -0.0750 -2.4190 7 6 2.4618 -0.7881 -3.6277 8 6 1.6571 1.2388 -2.4968 9 1 1.6639 1.8568 -1.6112 10 6 1.2590 1.7752 -3.7153 11 7 1.0685 0.9869 -4.7493 12 14 0.9945 3.6167 -3.8833 13 1 2.2308 4.2482 -4.4105 14 1 -0.1297 3.8719 -4.8194 15 1 0.6721 4.1938 -2.5535 16 6 2.0400 -0.7212 1.2493 17 1 3.1299 -0.7150 1.2577 18 8 1.5658 -2.0705 1.2540 19 6 1.8288 -2.7814 2.4670 20 6 0.9278 -2.2290 3.5795 21 6 1.0125 -0.7174 3.5388 22 16 0.4951 0.3852 4.8025 23 6 0.9905 1.7708 3.8403 24 6 1.4918 1.3530 2.6806 25 6 1.5123 -0.0236 2.4959 26 1 -0.3634 0.4957 0.9001 27 1 -0.3634 0.5317 -0.8794 28 1 -0.3633 -1.0275 -0.0208 29 1 1.5855 -1.1929 -4.1340 30 1 2.9805 -0.0990 -4.2942 31 1 3.1321 -1.6029 -3.3541 32 1 0.7910 1.3614 -5.5999 33 1 1.6198 -3.8411 2.3212 34 1 2.8743 -2.6511 2.7464 35 1 -0.1017 -2.5445 3.4108 36 1 1.2720 -2.5930 4.5476 37 1 0.9015 2.8034 4.1441 38 1 1.8589 2.0395 1.9320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293199470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:35 Heat of formation + Delta-G solvation = -36.858572 kcal Electronic energy + Delta-G solvation = -22442.150199 eV Core-core repulsion = 19183.859656 eV Total energy + Delta-G solvation = -3258.290543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92298 -38.18260 -36.25211 -34.67466 -33.37488 -31.66107 -31.24716 -28.57839 -26.33042 -25.53433 -24.68196 -23.98934 -21.83351 -21.43686 -18.92460 -17.97740 -17.34093 -16.96192 -16.39018 -15.55551 -14.95387 -14.77644 -14.46256 -14.23452 -14.00788 -13.78142 -13.39786 -13.10321 -12.76100 -12.58432 -12.10031 -11.97240 -11.78086 -11.52564 -11.47430 -11.26146 -11.00071 -10.99112 -10.75072 -10.69266 -10.54143 -10.38339 -10.21697 -10.09935 -9.20730 -9.06605 -8.49467 -8.24810 -8.13583 -7.67278 -6.29306 -3.89645 1.04734 1.66914 2.02852 2.76542 3.11426 3.20335 3.22321 3.96837 4.10227 4.21076 4.71008 4.73924 4.98859 5.08570 5.12576 5.25300 5.32774 5.51604 5.54939 5.68317 5.75442 5.86141 5.95635 6.03068 6.08020 6.28007 6.34935 6.43904 6.55691 6.60848 6.73090 6.94489 7.03010 7.16378 7.42469 7.49120 7.64790 7.84636 8.43857 9.13352 9.62650 10.03536 10.71612 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.005225 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.174410 B = 5357.539224 C = 6495.911803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 H 0.095 0.905 4 C 0.463 3.537 5 O -0.591 6.591 6 N -0.449 5.449 7 C 0.126 3.874 8 C -0.330 4.330 9 H 0.095 0.905 10 C 0.035 3.965 11 N -0.873 5.873 12 Si 0.919 3.081 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.175 3.825 17 H 0.069 0.931 18 O -0.336 6.336 19 C 0.063 3.937 20 C -0.080 4.080 21 C -0.177 4.177 22 S 0.079 5.921 23 C -0.217 4.217 24 C -0.113 4.113 25 C -0.126 4.126 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.164 0.836 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 0.262 15.384 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.099 4.099 3 H 0.113 0.887 4 C 0.251 3.749 5 O -0.477 6.477 6 N -0.167 5.167 7 C -0.017 4.017 8 C -0.458 4.458 9 H 0.113 0.887 10 C -0.169 4.169 11 N -0.512 5.512 12 Si 0.746 3.254 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.194 1.194 16 C 0.114 3.886 17 H 0.087 0.913 18 O -0.254 6.254 19 C -0.016 4.016 20 C -0.120 4.120 21 C -0.294 4.294 22 S 0.345 5.655 23 C -0.352 4.352 24 C -0.143 4.143 25 C -0.139 4.139 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.181 0.819 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.150 -0.485 16.475 16.523 hybrid contribution 0.456 1.612 -1.330 2.139 sum -0.695 1.127 15.145 15.203 Atomic orbital electron populations 1.21513 0.93052 1.02265 1.01630 1.21055 0.98221 0.99095 0.91489 0.88686 1.19866 0.83481 0.86617 0.84947 1.90556 1.52781 1.18223 1.86108 1.43590 1.56433 1.10827 1.05895 1.21254 0.98825 0.94907 0.86695 1.19611 1.44105 0.85655 0.96462 0.88708 1.25295 0.96119 0.99754 0.95751 1.70061 1.44463 1.34634 1.02031 0.86027 0.78038 0.82810 0.78494 1.20439 1.20887 1.19389 1.20816 0.96541 0.81512 0.89699 0.91346 1.88259 1.80093 1.23117 1.33918 1.22571 0.97326 0.96754 0.84955 1.21012 1.02361 0.88227 1.00402 1.24691 1.07648 0.99451 0.97626 1.83892 1.63700 0.97178 1.20743 1.25339 1.09100 1.01873 0.98906 1.19984 1.01582 0.94964 0.97748 1.20392 1.02573 0.93518 0.97410 0.93339 0.91089 0.92455 0.92913 0.91958 0.94932 0.92241 0.88424 0.93161 0.89598 0.90051 0.81897 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.70 37.16 0.32 -2.15 16 2 C -0.08 -1.55 1.58 -91.77 -0.15 -1.70 16 3 H 0.10 1.82 5.70 -51.93 -0.30 1.52 16 4 C 0.46 11.42 6.77 -10.99 -0.07 11.34 16 5 O -0.59 -15.94 14.56 -15.28 -0.22 -16.16 16 6 N -0.45 -11.57 3.02 -122.19 -0.37 -11.94 16 7 C 0.13 3.22 8.74 59.85 0.52 3.74 16 8 C -0.33 -8.30 8.28 -14.93 -0.12 -8.42 16 9 H 0.10 2.22 6.05 -52.49 -0.32 1.90 16 10 C 0.04 0.88 5.18 -17.47 -0.09 0.79 16 11 N -0.87 -23.05 10.38 55.50 0.58 -22.48 16 12 Si 0.92 19.37 29.56 -169.99 -5.03 14.35 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 16 C 0.18 3.19 2.46 -27.10 -0.07 3.12 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 O -0.34 -6.41 8.26 -56.06 -0.46 -6.87 16 19 C 0.06 0.89 6.83 37.39 0.26 1.14 16 20 C -0.08 -0.98 6.55 -27.29 -0.18 -1.16 16 21 C -0.18 -2.48 6.44 -35.14 -0.23 -2.70 16 22 S 0.08 0.94 23.32 -107.50 -2.51 -1.56 16 23 C -0.22 -2.62 11.21 28.94 0.32 -2.30 16 24 C -0.11 -1.57 9.01 -41.13 -0.37 -1.94 16 25 C -0.13 -1.96 4.29 -104.78 -0.45 -2.41 16 26 H 0.05 0.84 6.79 -51.93 -0.35 0.49 16 27 H 0.07 1.48 7.32 -51.93 -0.38 1.10 16 28 H 0.06 1.18 7.73 -51.93 -0.40 0.78 16 29 H 0.05 1.40 7.48 -51.93 -0.39 1.01 16 30 H 0.06 1.59 7.00 -51.93 -0.36 1.23 16 31 H 0.03 0.80 7.25 -51.93 -0.38 0.42 16 32 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.14 1.87 7.39 -52.48 -0.39 1.48 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -29.98 316.20 -8.48 -38.45 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.93 Total: 4.08 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.30 Total: -2.63 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.21 Total: -34.42 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.69 Total: -23.03 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.98 -8.48 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293199470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.596 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds