Wall clock time and date at job start Tue Mar 31 2020 07:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46739 * 2 1 4 4 C 1.50694 * 109.47022 * 239.99889 * 2 1 3 5 5 O 1.21291 * 120.00284 * 258.69606 * 4 2 1 6 6 N 1.34781 * 120.00081 * 78.70468 * 4 2 1 7 7 C 1.46499 * 120.00188 * 183.28184 * 6 4 2 8 8 C 1.37102 * 119.99656 * 3.27551 * 6 4 2 9 9 H 1.07995 * 120.00311 * 20.32350 * 8 6 4 10 10 C 1.38954 * 119.99783 * 200.31521 * 8 6 4 11 11 N 1.31412 * 119.99858 * 9.62687 * 10 8 6 12 12 Si 1.86796 * 120.00053 * 189.62107 * 10 8 6 13 13 H 1.48499 * 109.46912 * 94.93858 * 12 10 8 14 14 H 1.48497 * 109.47204 * 214.94268 * 12 10 8 15 15 H 1.48506 * 109.46956 * 334.94239 * 12 10 8 16 16 C 1.52997 * 109.46948 * 119.99804 * 2 1 3 17 17 H 1.08994 * 109.68935 * 180.53604 * 16 2 1 18 18 O 1.43024 * 109.68924 * 60.00256 * 16 2 1 19 19 C 1.43039 * 114.24841 * 188.22370 * 18 16 2 20 20 C 1.53443 * 109.14748 * 71.21982 * 19 18 16 21 21 C 1.51447 * 107.87852 * 312.65593 * 20 19 18 22 22 S 1.75515 * 126.24429 * 195.46744 * 21 20 19 23 23 C 1.75816 * 91.03113 * 179.89278 * 22 21 20 24 24 C 1.33068 * 109.61370 * 0.02562 * 23 22 21 25 25 C 1.34872 * 123.70755 * 15.36259 * 21 20 19 26 26 H 1.08997 * 109.47647 * 298.84318 * 1 2 3 27 27 H 1.09002 * 109.47234 * 58.84369 * 1 2 3 28 28 H 1.09001 * 109.47162 * 178.84043 * 1 2 3 29 29 H 1.08998 * 109.47285 * 94.38536 * 7 6 4 30 30 H 1.09001 * 109.47011 * 214.38863 * 7 6 4 31 31 H 1.09004 * 109.46674 * 334.38726 * 7 6 4 32 32 H 0.96996 * 119.99607 * 180.02562 * 11 10 8 33 33 H 1.08995 * 109.54005 * 191.14592 * 19 18 16 34 34 H 1.09003 * 109.53268 * 311.30458 * 19 18 16 35 35 H 1.08997 * 109.76683 * 72.18345 * 20 19 18 36 36 H 1.08999 * 109.77062 * 192.98335 * 20 19 18 37 37 H 1.08003 * 125.19134 * 180.02562 * 23 22 21 38 38 H 1.08003 * 122.17688 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.4286 -1.8540 -1.1512 6 7 2.0414 -0.0750 -2.4190 7 6 2.4618 -0.7881 -3.6277 8 6 1.6571 1.2388 -2.4968 9 1 1.6639 1.8568 -1.6112 10 6 1.2590 1.7752 -3.7153 11 7 1.0685 0.9869 -4.7493 12 14 0.9945 3.6167 -3.8833 13 1 2.2308 4.2482 -4.4105 14 1 -0.1297 3.8719 -4.8194 15 1 0.6721 4.1938 -2.5535 16 6 2.0400 -0.7212 1.2493 17 1 3.1299 -0.7150 1.2577 18 8 1.5658 -2.0705 1.2540 19 6 1.8288 -2.7814 2.4670 20 6 0.9278 -2.2290 3.5795 21 6 1.0125 -0.7174 3.5388 22 16 0.4951 0.3852 4.8025 23 6 0.9905 1.7708 3.8403 24 6 1.4918 1.3530 2.6806 25 6 1.5123 -0.0236 2.4959 26 1 -0.3634 0.4957 0.9001 27 1 -0.3634 0.5317 -0.8794 28 1 -0.3633 -1.0275 -0.0208 29 1 1.5855 -1.1929 -4.1340 30 1 2.9805 -0.0990 -4.2942 31 1 3.1321 -1.6029 -3.3541 32 1 0.7910 1.3614 -5.5999 33 1 1.6198 -3.8411 2.3212 34 1 2.8743 -2.6511 2.7464 35 1 -0.1017 -2.5445 3.4108 36 1 1.2720 -2.5930 4.5476 37 1 0.9015 2.8034 4.1441 38 1 1.8589 2.0395 1.9320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293199470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:34 Heat of formation + Delta-G solvation = -53.126378 kcal Electronic energy + Delta-G solvation = -22442.855624 eV Core-core repulsion = 19183.859656 eV Total energy + Delta-G solvation = -3258.995968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29955 -39.93046 -37.39932 -36.63485 -34.87627 -33.33749 -32.72485 -29.81011 -28.29990 -26.90683 -26.50558 -25.20887 -23.24938 -22.61284 -20.81224 -19.15929 -18.77716 -18.31387 -17.99985 -17.12922 -16.46085 -16.22892 -15.86317 -15.62414 -15.60808 -15.42970 -14.59542 -14.52761 -14.34179 -13.95759 -13.42859 -13.34303 -13.19145 -13.12333 -12.98747 -12.84920 -12.70189 -12.55595 -12.47571 -12.14132 -12.02698 -11.96456 -11.75225 -11.48677 -11.00916 -10.48323 -10.09978 -9.71111 -9.46465 -9.22079 -8.22483 -5.89949 0.04698 0.70105 1.05100 1.45214 1.49255 1.60757 1.69954 2.09081 2.33079 2.91377 3.02306 3.20292 3.71116 3.76172 3.92254 4.11420 4.22658 4.26772 4.35007 4.45044 4.49756 4.55648 4.69487 4.80466 4.82748 4.85731 5.00418 5.03376 5.05507 5.11423 5.19327 5.34733 5.35981 5.42175 5.48982 5.56123 5.88560 6.39203 6.46530 7.17210 7.65988 8.06574 8.80045 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.005225 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.174410 B = 5357.539224 C = 6495.911803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 H 0.105 0.895 4 C 0.453 3.547 5 O -0.621 6.621 6 N -0.464 5.464 7 C 0.140 3.860 8 C -0.344 4.344 9 H 0.111 0.889 10 C -0.010 4.010 11 N -0.907 5.907 12 Si 0.990 3.010 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.252 1.252 16 C 0.180 3.820 17 H 0.053 0.947 18 O -0.373 6.373 19 C 0.054 3.946 20 C -0.075 4.075 21 C -0.192 4.192 22 S 0.129 5.871 23 C -0.210 4.210 24 C -0.135 4.135 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.268 0.732 33 H 0.111 0.889 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.192 0.808 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 2.075 18.012 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.123 0.877 4 C 0.242 3.758 5 O -0.508 6.508 6 N -0.182 5.182 7 C -0.004 4.004 8 C -0.472 4.472 9 H 0.129 0.871 10 C -0.211 4.211 11 N -0.547 5.547 12 Si 0.813 3.187 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.175 1.175 16 C 0.119 3.881 17 H 0.070 0.930 18 O -0.291 6.291 19 C -0.024 4.024 20 C -0.115 4.115 21 C -0.309 4.309 22 S 0.395 5.605 23 C -0.345 4.345 24 C -0.165 4.165 25 C -0.158 4.158 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.209 0.791 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.935 1.326 19.129 19.272 hybrid contribution 0.706 0.954 -2.091 2.404 sum -1.229 2.280 17.038 17.234 Atomic orbital electron populations 1.21353 0.92434 1.01120 1.01939 1.20999 0.98430 0.99296 0.90292 0.87680 1.20712 0.82621 0.86556 0.85910 1.90519 1.53858 1.19674 1.86747 1.43880 1.56725 1.11490 1.06150 1.21020 0.97813 0.94662 0.86892 1.20025 1.44260 0.85494 0.97385 0.87128 1.26218 0.95485 1.04266 0.95172 1.70189 1.45262 1.36647 1.02555 0.84948 0.77627 0.77083 0.79005 1.20145 1.21228 1.17533 1.20554 0.95662 0.81737 0.90144 0.92956 1.88185 1.80451 1.23750 1.36734 1.22830 0.98156 0.97185 0.84221 1.21026 1.02176 0.87366 1.00886 1.25015 1.07010 1.00688 0.98177 1.83747 1.62204 0.95765 1.18789 1.25725 1.07264 1.03473 0.98051 1.20024 1.03161 0.94323 0.98956 1.20158 1.04519 0.94344 0.96789 0.90850 0.92764 0.94179 0.94740 0.92505 0.95016 0.92191 0.87062 0.92903 0.89141 0.87107 0.79119 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 8.70 71.98 0.63 -3.67 16 2 C -0.07 -2.80 1.58 -11.54 -0.02 -2.82 16 3 H 0.11 3.98 5.70 -2.39 -0.01 3.97 16 4 C 0.45 22.91 6.77 87.65 0.59 23.51 16 5 O -0.62 -34.66 14.56 16.85 0.25 -34.41 16 6 N -0.46 -24.51 3.02 -658.89 -1.99 -26.50 16 7 C 0.14 7.41 8.74 127.77 1.12 8.53 16 8 C -0.34 -17.33 8.28 84.04 0.70 -16.64 16 9 H 0.11 5.09 6.05 -2.91 -0.02 5.07 16 10 C -0.01 -0.52 5.18 84.93 0.44 -0.08 16 11 N -0.91 -48.66 10.38 21.66 0.22 -48.43 16 12 Si 0.99 39.05 29.56 68.60 2.03 41.08 16 13 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 14 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 16 C 0.18 6.58 2.46 30.36 0.07 6.65 16 17 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 18 O -0.37 -14.37 8.26 -129.06 -1.07 -15.44 16 19 C 0.05 1.49 6.83 72.13 0.49 1.98 16 20 C -0.08 -1.67 6.55 30.23 0.20 -1.47 16 21 C -0.19 -4.90 6.44 25.15 0.16 -4.74 16 22 S 0.13 2.59 23.32 -56.49 -1.32 1.27 16 23 C -0.21 -4.32 11.21 66.66 0.75 -3.58 16 24 C -0.13 -3.46 9.01 21.27 0.19 -3.26 16 25 C -0.15 -4.29 4.29 -19.97 -0.09 -4.38 16 26 H 0.07 2.45 6.79 -2.39 -0.02 2.44 16 27 H 0.05 2.25 7.32 -2.39 -0.02 2.24 16 28 H 0.04 1.66 7.73 -2.39 -0.02 1.64 16 29 H 0.03 1.91 7.48 -2.39 -0.02 1.89 16 30 H 0.06 3.01 7.00 -2.39 -0.02 2.99 16 31 H 0.03 1.63 7.25 -2.39 -0.02 1.61 16 32 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 33 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.05 1.39 8.09 -2.39 -0.02 1.37 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.14 3.52 7.39 -2.91 -0.02 3.50 16 Total: -1.00 -65.36 316.20 4.43 -60.93 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 1.07 Total: 21.47 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.23 Total: 0.03 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.77 Total: -74.93 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.82 Total: -49.85 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.32 Total: 1.27 kcal Total: -65.36 4.43 -60.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293199470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.807 kcal (2) G-P(sol) polarization free energy of solvation -65.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds