Wall clock time and date at job start Tue Mar 31 2020 07:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47405 * 2 1 4 4 C 1.50700 * 109.47029 * 239.99579 * 2 1 3 5 5 O 1.21297 * 119.99695 * 255.60054 * 4 2 1 6 6 N 1.34770 * 120.00355 * 75.60120 * 4 2 1 7 7 C 1.46496 * 120.00436 * 174.41626 * 6 4 2 8 8 C 1.37104 * 119.99686 * 354.41752 * 6 4 2 9 9 H 1.07994 * 120.00109 * 3.94742 * 8 6 4 10 10 C 1.38952 * 120.00039 * 183.93545 * 8 6 4 11 11 N 1.31413 * 119.99736 * 8.06257 * 10 8 6 12 12 Si 1.86801 * 120.00123 * 188.05403 * 10 8 6 13 13 H 1.48506 * 109.46992 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.46921 * 120.00771 * 12 10 8 15 15 H 1.48499 * 109.47151 * 240.00518 * 12 10 8 16 16 C 1.52998 * 109.46829 * 119.99840 * 2 1 3 17 17 H 1.09004 * 109.72205 * 301.16632 * 16 2 1 18 18 O 1.43022 * 109.69519 * 61.72466 * 16 2 1 19 19 C 1.43039 * 114.24782 * 171.78410 * 18 16 2 20 20 C 1.53435 * 109.08027 * 288.73704 * 19 18 16 21 21 C 1.51403 * 107.90509 * 47.45665 * 20 19 18 22 22 S 1.75508 * 126.27573 * 164.80375 * 21 20 19 23 23 C 1.75810 * 91.03684 * 180.02562 * 22 21 20 24 24 C 1.33071 * 109.61392 * 359.68269 * 23 22 21 25 25 C 1.34881 * 123.68113 * 344.49556 * 21 20 19 26 26 H 1.08998 * 109.47379 * 184.12762 * 1 2 3 27 27 H 1.09002 * 109.47084 * 304.13127 * 1 2 3 28 28 H 1.09001 * 109.46874 * 64.12438 * 1 2 3 29 29 H 1.09004 * 109.47047 * 354.38492 * 7 6 4 30 30 H 1.09009 * 109.46965 * 114.38279 * 7 6 4 31 31 H 1.09000 * 109.47756 * 234.37812 * 7 6 4 32 32 H 0.97003 * 119.99633 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.53518 * 168.86178 * 19 18 16 34 34 H 1.08998 * 109.60324 * 48.65484 * 19 18 16 35 35 H 1.09004 * 109.77416 * 287.85554 * 20 19 18 36 36 H 1.08994 * 109.77493 * 167.05605 * 20 19 18 37 37 H 1.08003 * 125.19546 * 179.88797 * 23 22 21 38 38 H 1.07998 * 122.18508 * 180.25503 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4807 -1.8340 -1.1413 6 7 1.9833 -0.0977 -2.4297 7 6 2.5819 -0.7370 -3.6041 8 6 1.3732 1.1242 -2.5507 9 1 0.9884 1.6247 -1.6745 10 6 1.2503 1.7186 -3.8006 11 7 1.5727 1.0461 -4.8826 12 14 0.6264 3.4736 -3.9429 13 1 0.3347 4.0067 -2.5879 14 1 1.6620 4.3158 -4.5935 15 1 -0.6131 3.4936 -4.7605 16 6 2.0399 -0.7212 1.2493 17 1 1.6618 -0.2227 2.1419 18 8 1.5992 -2.0817 1.2340 19 6 2.1722 -2.8964 2.2607 20 6 3.6520 -3.1423 1.9383 21 6 4.2766 -1.8118 1.5748 22 16 5.9938 -1.4604 1.4861 23 6 5.6620 0.2039 1.0270 24 6 4.3468 0.3954 0.9611 25 6 3.5627 -0.7110 1.2620 26 1 -0.3634 -1.0250 0.0740 27 1 -0.3633 0.5766 0.8507 28 1 -0.3633 0.4485 -0.9247 29 1 3.1020 -1.6447 -3.2980 30 1 1.7986 -0.9903 -4.3186 31 1 3.2903 -0.0516 -4.0695 32 1 1.4865 1.4610 -5.7552 33 1 1.6458 -3.8498 2.3058 34 1 2.0880 -2.3876 3.2209 35 1 3.7369 -3.8314 1.0980 36 1 4.1550 -3.5597 2.8106 37 1 6.4113 0.9553 0.8256 38 1 3.9171 1.3488 0.6914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293199476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:37 Heat of formation + Delta-G solvation = -28.746730 kcal Electronic energy + Delta-G solvation = -22856.692278 eV Core-core repulsion = 19598.753490 eV Total energy + Delta-G solvation = -3257.938787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.83114 -37.98810 -36.09599 -34.61992 -33.40312 -31.54151 -31.15741 -28.60039 -26.28242 -25.50902 -24.52148 -23.68353 -21.54733 -21.47394 -18.88003 -18.16357 -17.09970 -16.91777 -16.37636 -15.52612 -14.68193 -14.65368 -14.35004 -14.10332 -13.90677 -13.72670 -13.12362 -12.85722 -12.79429 -12.61630 -12.04187 -11.68787 -11.63630 -11.55404 -11.51574 -11.20630 -11.02206 -10.81532 -10.74588 -10.56672 -10.36527 -10.31313 -10.18362 -10.08900 -9.16169 -9.03276 -8.21409 -8.11591 -7.88617 -7.73403 -6.20205 -3.78088 1.34309 1.94452 2.28897 3.04995 3.11562 3.20922 3.23565 4.03318 4.10774 4.24643 4.87168 4.94346 5.06688 5.18868 5.24236 5.38863 5.45030 5.55017 5.63696 5.67897 5.91138 5.94504 5.99115 6.10777 6.19914 6.25624 6.44502 6.56322 6.64648 6.69668 6.82489 6.94979 7.04155 7.34238 7.45827 7.60035 7.66978 7.86548 8.50453 9.17813 9.70928 10.11588 10.73974 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.005642 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.954061 B = 4962.015856 C = 5368.294017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 H 0.094 0.906 4 C 0.466 3.534 5 O -0.584 6.584 6 N -0.455 5.455 7 C 0.128 3.872 8 C -0.325 4.325 9 H 0.101 0.899 10 C 0.030 3.970 11 N -0.878 5.878 12 Si 0.920 3.080 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.176 3.824 17 H 0.065 0.935 18 O -0.342 6.342 19 C 0.068 3.932 20 C -0.075 4.075 21 C -0.159 4.159 22 S 0.073 5.927 23 C -0.220 4.220 24 C -0.110 4.110 25 C -0.119 4.119 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -1.623 12.958 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.112 0.888 4 C 0.253 3.747 5 O -0.468 6.468 6 N -0.175 5.175 7 C -0.015 4.015 8 C -0.453 4.453 9 H 0.119 0.881 10 C -0.173 4.173 11 N -0.518 5.518 12 Si 0.747 3.253 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.115 3.885 17 H 0.083 0.917 18 O -0.260 6.260 19 C -0.011 4.011 20 C -0.114 4.114 21 C -0.276 4.276 22 S 0.338 5.662 23 C -0.355 4.355 24 C -0.141 4.141 25 C -0.131 4.131 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.178 0.822 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.783 -3.024 12.837 14.029 hybrid contribution -1.182 2.102 -0.560 2.476 sum 3.602 -0.922 12.277 12.827 Atomic orbital electron populations 1.21719 0.93282 1.02385 1.02443 1.21152 0.97563 0.99216 0.92599 0.88815 1.19587 0.83905 0.86897 0.84300 1.90547 1.51486 1.18936 1.85846 1.43660 1.49159 1.18011 1.06633 1.21404 0.98111 0.94883 0.87066 1.19793 1.35782 0.95009 0.94708 0.88100 1.25253 0.97346 0.99591 0.95106 1.70225 1.47591 1.35874 0.98089 0.85970 0.78376 0.82412 0.78556 1.19345 1.20727 1.20751 1.20804 0.86953 0.83671 0.97054 0.91705 1.88162 1.65720 1.19762 1.52345 1.22501 0.92138 0.95786 0.90631 1.20883 0.96257 0.92610 1.01684 1.24488 0.95032 0.99335 1.08780 1.83740 1.05970 1.07005 1.69462 1.25225 0.99617 0.98979 1.11643 1.19908 0.92670 0.99885 1.01610 1.20095 0.97573 0.92892 1.02563 0.92078 0.93306 0.90403 0.95087 0.91673 0.92781 0.92518 0.88690 0.93601 0.89261 0.90623 0.82178 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.76 37.16 0.33 -2.23 16 2 C -0.08 -1.66 1.50 -91.77 -0.14 -1.80 16 3 H 0.09 1.78 6.34 -51.93 -0.33 1.45 16 4 C 0.47 11.38 6.35 -10.99 -0.07 11.31 16 5 O -0.58 -15.58 13.69 -15.64 -0.21 -15.79 16 6 N -0.46 -11.83 3.03 -122.19 -0.37 -12.20 16 7 C 0.13 3.37 8.85 59.84 0.53 3.90 16 8 C -0.33 -8.22 8.35 -14.93 -0.12 -8.34 16 9 H 0.10 2.36 5.17 -52.49 -0.27 2.09 16 10 C 0.03 0.76 5.40 -17.47 -0.09 0.67 16 11 N -0.88 -23.34 9.57 55.50 0.53 -22.81 16 12 Si 0.92 19.52 29.56 -169.99 -5.02 14.50 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.18 3.14 2.62 -27.10 -0.07 3.07 16 17 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 18 O -0.34 -6.39 8.16 -56.41 -0.46 -6.85 16 19 C 0.07 0.97 6.83 37.38 0.26 1.23 16 20 C -0.07 -1.10 6.55 -27.31 -0.18 -1.28 16 21 C -0.16 -2.70 6.44 -35.15 -0.23 -2.93 16 22 S 0.07 1.10 23.32 -107.50 -2.51 -1.40 16 23 C -0.22 -3.39 11.21 28.94 0.32 -3.07 16 24 C -0.11 -1.88 9.46 -41.13 -0.39 -2.27 16 25 C -0.12 -2.14 4.16 -104.78 -0.44 -2.58 16 26 H 0.06 1.15 7.62 -51.93 -0.40 0.75 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.53 6.20 -51.93 -0.32 1.21 16 29 H 0.03 0.80 6.95 -51.93 -0.36 0.44 16 30 H 0.06 1.78 6.94 -51.92 -0.36 1.41 16 31 H 0.05 1.44 7.20 -51.93 -0.37 1.07 16 32 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 38 H 0.14 2.20 7.35 -52.49 -0.39 1.81 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -30.56 314.08 -8.50 -39.06 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.89 Total: 5.08 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.29 Total: -4.31 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.16 Total: -35.01 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.67 Total: -22.65 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.56 -8.50 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293199476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.313 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds